RNA–Protein interactions for RNA: ENST00000338862.5

PCDH8-201, Transcript of protocadherin 8, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH8, Length 3,708 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH8-201ENST00000338862 NISCHQ9Y2I1 1504 aa26.26■■□□□ 1.79
PCDH8-201ENST00000338862 SHROOM4Q9ULL8 1493 aa24.53■■□□□ 1.52
PCDH8-201ENST00000338862 SUPT5HO00267 1087 aaKnown RBP24.46■■□□□ 1.51
PCDH8-201ENST00000338862 DCAF8L2P0C7V8 631 aa24.17■■□□□ 1.46
PCDH8-201ENST00000338862 PCGF6Q9BYE7 350 aa23.59■■□□□ 1.37
PCDH8-201ENST00000338862 PPARGC1BQ86YN6 1023 aaKnown RBP23.28■■□□□ 1.32
PCDH8-201ENST00000338862 EHMT2Q96KQ7 1210 aa23.28■■□□□ 1.32
PCDH8-201ENST00000338862 HRCP23327 699 aa23.17■■□□□ 1.3
PCDH8-201ENST00000338862 CHIC1Q5VXU3 224 aa23.07■■□□□ 1.28
PCDH8-201ENST00000338862 LOC105371045A0A1W2PR82 267 aa23.02■■□□□ 1.28
PCDH8-201ENST00000338862 FAM9AQ8IZU1 332 aaPredicted RBP22.88■■□□□ 1.25
PCDH8-201ENST00000338862 MYO15BQ96JP2 1530 aa22.69■■□□□ 1.22
PCDH8-201ENST00000338862 TTBK1Q5TCY1 1321 aaPredicted RBP22.52■■□□□ 1.2
PCDH8-201ENST00000338862 TRIM26Q12899 539 aaPredicted RBP22.4■■□□□ 1.18
PCDH8-201ENST00000338862 TRIM41Q8WV44 630 aa22.35■■□□□ 1.17
PCDH8-201ENST00000338862 ZCCHC6Q5VYS8 1495 aaKnown RBP22.08■■□□□ 1.13
PCDH8-201ENST00000338862 CCER1Q8TC90 406 aaPredicted RBP22.05■■□□□ 1.12
PCDH8-201ENST00000338862 ZEB1P37275 1124 aaPredicted RBP22.02■■□□□ 1.11
PCDH8-201ENST00000338862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22■■□□□ 1.11
PCDH8-201ENST00000338862 YTHDC1Q96MU7 727 aaKnown RBP21.85■■□□□ 1.09
PCDH8-201ENST00000338862 SCAF1Q9H7N4 1312 aaKnown RBP21.82■■□□□ 1.08
PCDH8-201ENST00000338862 DCAF1Q9Y4B6 1507 aa21.81■■□□□ 1.08
PCDH8-201ENST00000338862 RANGAP1P46060 587 aaPredicted RBP21.75■■□□□ 1.07
PCDH8-201ENST00000338862 PELP1Q8IZL8 1130 aaKnown RBP21.7■■□□□ 1.06
PCDH8-201ENST00000338862 CENPBP07199 599 aaPredicted RBP21.59■■□□□ 1.05
PCDH8-201ENST00000338862 GTF3C3Q9Y5Q9 886 aa21.57■■□□□ 1.04
PCDH8-201ENST00000338862 DIEXFQ68CQ4 756 aaKnown RBP21.56■■□□□ 1.04
PCDH8-201ENST00000338862 UBTFP17480 764 aaKnown RBP21.55■■□□□ 1.04
PCDH8-201ENST00000338862 NEUROD1Q13562 356 aa21.53■■□□□ 1.04
PCDH8-201ENST00000338862 ACIN1Q9UKV3 1341 aaKnown RBP21.44■■□□□ 1.02
PCDH8-201ENST00000338862 HNRNPUL2Q1KMD3 747 aaKnown RBP21.43■■□□□ 1.02
PCDH8-201ENST00000338862 CCDC180Q9P1Z9 1646 aa21.32■■□□□ 1
PCDH8-201ENST00000338862 SCRIBQ14160 1630 aa21.31■■□□□ 1
PCDH8-201ENST00000338862 RSF1Q96T23 1441 aaPredicted RBP21.27■■□□□ 1
PCDH8-201ENST00000338862 APLP2Q06481 763 aa21.25■□□□□ 0.99
PCDH8-201ENST00000338862 ABCC9O60706 1549 aa21.15■□□□□ 0.98
PCDH8-201ENST00000338862 ZNF316A6NFI3 1004 aaPredicted RBP21.05■□□□□ 0.96
PCDH8-201ENST00000338862 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
PCDH8-201ENST00000338862 ITGAEP38570 1179 aa21.03■□□□□ 0.96
PCDH8-201ENST00000338862 MIER1Q8N108 512 aa20.99■□□□□ 0.95
PCDH8-201ENST00000338862 CECR2Q9BXF3 1484 aa20.96■□□□□ 0.95
PCDH8-201ENST00000338862 PABPN1Q86U42 306 aaKnown RBP eCLIP20.9■□□□□ 0.94
PCDH8-201ENST00000338862 CSRNP3Q8WYN3 585 aa20.87■□□□□ 0.93
PCDH8-201ENST00000338862 BCANQ96GW7 911 aa20.8■□□□□ 0.92
PCDH8-201ENST00000338862 ATP1B4Q9UN42 357 aaPredicted RBP20.78■□□□□ 0.92
PCDH8-201ENST00000338862 CEP162Q5TB80 1403 aa20.72■□□□□ 0.91
PCDH8-201ENST00000338862 MROH2BQ7Z745 1585 aa20.7■□□□□ 0.9
PCDH8-201ENST00000338862 SOGA1O94964 1423 aa20.68■□□□□ 0.9
PCDH8-201ENST00000338862 MYT1Q01538 1121 aa20.65■□□□□ 0.9
PCDH8-201ENST00000338862 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
PCDH8-201ENST00000338862 CCDC88BA6NC98 1476 aa20.6■□□□□ 0.89
PCDH8-201ENST00000338862 WIZO95785 1651 aa20.55■□□□□ 0.88
PCDH8-201ENST00000338862 RUSC2Q8N2Y8 1516 aa20.48■□□□□ 0.87
PCDH8-201ENST00000338862 HIRIP3Q9BW71 556 aaPredicted RBP20.47■□□□□ 0.87
PCDH8-201ENST00000338862 TNIKQ9UKE5 1360 aa20.41■□□□□ 0.86
PCDH8-201ENST00000338862 CNGB1Q14028 1251 aaPredicted RBP20.39■□□□□ 0.85
PCDH8-201ENST00000338862 NEFLP07196 543 aa20.38■□□□□ 0.85
PCDH8-201ENST00000338862 FAM50AQ14320 339 aaKnown RBP20.37■□□□□ 0.85
PCDH8-201ENST00000338862 CLIP1P30622 1438 aa20.37■□□□□ 0.85
PCDH8-201ENST00000338862 DDX10Q13206 875 aaKnown RBP20.35■□□□□ 0.85
PCDH8-201ENST00000338862 P3H3Q8IVL6 736 aa20.33■□□□□ 0.85
PCDH8-201ENST00000338862 FKBP8Q14318 412 aa20.32■□□□□ 0.84
PCDH8-201ENST00000338862 SUPT16HQ9Y5B9 1047 aaKnown RBP20.32■□□□□ 0.84
PCDH8-201ENST00000338862 KCNH8Q96L42 1107 aa20.31■□□□□ 0.84
PCDH8-201ENST00000338862 TRIM52Q96A61 297 aa20.29■□□□□ 0.84
PCDH8-201ENST00000338862 GOLGA3Q08378 1498 aa20.26■□□□□ 0.83
PCDH8-201ENST00000338862 KANK4Q5T7N3 995 aaPredicted RBP20.23■□□□□ 0.83
PCDH8-201ENST00000338862 WRNQ14191 1432 aaPredicted RBP eCLIP20.21■□□□□ 0.83
PCDH8-201ENST00000338862 ERICH6Q7L0X2 663 aa20.2■□□□□ 0.82
PCDH8-201ENST00000338862 IRX6P78412 446 aaPredicted RBP20.15■□□□□ 0.82
PCDH8-201ENST00000338862 SIN3AQ96ST3 1273 aa20.14■□□□□ 0.81
PCDH8-201ENST00000338862 BAZ1AQ9NRL2 1556 aaPredicted RBP20.14■□□□□ 0.81
PCDH8-201ENST00000338862 NACADO15069 1562 aa20.1■□□□□ 0.81
PCDH8-201ENST00000338862 TSHZ2Q9NRE2 1034 aa20.08■□□□□ 0.8
PCDH8-201ENST00000338862 POLR3GLQ9BT43 218 aa20.06■□□□□ 0.8
PCDH8-201ENST00000338862 EEA1Q15075 1411 aa20.05■□□□□ 0.8
PCDH8-201ENST00000338862 ANP32CO43423 234 aa20.04■□□□□ 0.8
PCDH8-201ENST00000338862 CEP164Q9UPV0 1460 aa20.03■□□□□ 0.8
PCDH8-201ENST00000338862 VPS8Q8N3P4 1428 aa20.01■□□□□ 0.79
PCDH8-201ENST00000338862 RAPGEF2Q9Y4G8 1499 aa20■□□□□ 0.79
PCDH8-201ENST00000338862 SENP3-EIF4A1A0A087X0R7 540 aa19.99■□□□□ 0.79
PCDH8-201ENST00000338862 ANP32EQ9BTT0 268 aa19.97■□□□□ 0.79
PCDH8-201ENST00000338862 ARID3CA6NKF2 412 aa19.95■□□□□ 0.78
PCDH8-201ENST00000338862 DHX57Q6P158 1386 aaKnown RBP19.94■□□□□ 0.78
PCDH8-201ENST00000338862 TOP2AP11388 1531 aaKnown RBP19.93■□□□□ 0.78
PCDH8-201ENST00000338862 HNRNPUQ00839 825 aaKnown RBP eCLIP19.92■□□□□ 0.78
PCDH8-201ENST00000338862 SMARCA2P51531 1590 aa19.88■□□□□ 0.77
PCDH8-201ENST00000338862 CLSPNQ9HAW4 1339 aa19.81■□□□□ 0.76
PCDH8-201ENST00000338862 CCNB3Q8WWL7 1395 aa19.81■□□□□ 0.76
PCDH8-201ENST00000338862 CHIC2Q9UKJ5 165 aa19.8■□□□□ 0.76
PCDH8-201ENST00000338862 RBM19Q9Y4C8 960 aaKnown RBP19.8■□□□□ 0.76
PCDH8-201ENST00000338862 SMARCA4P51532 1647 aa19.8■□□□□ 0.76
PCDH8-201ENST00000338862 FAM9BQ8IZU0 186 aa19.79■□□□□ 0.76
PCDH8-201ENST00000338862 CDK11AQ9UQ88 783 aaPredicted RBP19.78■□□□□ 0.76
PCDH8-201ENST00000338862 RAB3GAP2Q9H2M9 1393 aa19.77■□□□□ 0.76
PCDH8-201ENST00000338862 BCL11AQ9H165 835 aa19.75■□□□□ 0.75
PCDH8-201ENST00000338862 TONSLQ96HA7 1378 aa19.74■□□□□ 0.75
PCDH8-201ENST00000338862 ZNF326Q5BKZ1 582 aaKnown RBP19.74■□□□□ 0.75
PCDH8-201ENST00000338862 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
PCDH8-201ENST00000338862 SYNJ1O43426 1573 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms