Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.98□□□□□ -0.012e-6■■■■■ 86.6
SF3B1O75533 SEPT9-203ENST00000427177 3821 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.292e-6■■■■■ 86.6
SF3B1O75533 SEPT9-207ENST00000449803 3996 ntTSL 2 BASIC12.92□□□□□ -0.342e-6■■■■■ 86.6
SF3B1O75533 SEPT9-201ENST00000329047 4453 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.432e-6■■■■■ 86.6
SF3B1O75533 SEPT9-206ENST00000431235 4004 ntTSL 5 BASIC12.27□□□□□ -0.452e-6■■■■■ 86.6
SF3B1O75533 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.732e-6■■■■■ 86.6
SF3B1O75533 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.492e-6■■■■■ 86.6
SF3B1O75533 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.07■□□□□ 0.482e-6■■■■■ 86.6
SF3B1O75533 STRN4-218ENST00000600358 1267 ntTSL 517.46■□□□□ 0.382e-6■■■■■ 86.6
SF3B1O75533 STRN4-203ENST00000435164 1551 ntTSL 215□□□□□ -0.012e-6■■■■■ 86.6
SF3B1O75533 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.161e-6■■■■■ 86.6
SF3B1O75533 CHD2-227ENST00000637572 4452 ntTSL 55.78□□□□□ -1.483e-6■■■■■ 86.6
SF3B1O75533 PLEC-201ENST00000322810 15249 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.552e-6■■■■■ 86.5
SF3B1O75533 PLEC-204ENST00000354958 14751 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.592e-6■■■■■ 86.5
SF3B1O75533 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.351e-6■■■■■ 86.5
SF3B1O75533 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.131e-6■■■■■ 86.5
SF3B1O75533 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.151e-6■■■■■ 86.5
SF3B1O75533 GAK-211ENST00000509566 3126 ntTSL 215.27■□□□□ 0.036e-6■■■■■ 86.5
SF3B1O75533 GAK-221ENST00000515868 3903 ntTSL 212.36□□□□□ -0.436e-6■■■■■ 86.5
SF3B1O75533 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.235e-7■■■■■ 86.5
SF3B1O75533 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.282e-6■■■■■ 86.5
SF3B1O75533 C5orf66-203ENST00000513931 474 ntTSL 3 BASIC11.11□□□□□ -0.633e-6■■■■■ 86.5
SF3B1O75533 ARL6IP6-205ENST00000495469 1308 ntTSL 222.97■■□□□ 1.272e-6■■■■■ 86.5
SF3B1O75533 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.412e-6■■■■■ 86.5
SF3B1O75533 ARL6IP6-202ENST00000425034 465 ntTSL 22.87□□□□□ -1.952e-6■■■■■ 86.5
SF3B1O75533 ARL6IP6-203ENST00000455875 479 ntTSL 22.39□□□□□ -2.032e-6■■■■■ 86.5
SF3B1O75533 ARL6IP6-204ENST00000463690 1402 ntTSL 22.1□□□□□ -2.072e-6■■■■■ 86.5
SF3B1O75533 SLC11A2-210ENST00000547510 924 ntTSL 522.25■■□□□ 1.157e-6■■■■■ 86.4
SF3B1O75533 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.33■□□□□ 0.857e-6■■■■■ 86.4
SF3B1O75533 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.077e-6■■■■■ 86.4
SF3B1O75533 SLC11A2-207ENST00000546636 2125 ntTSL 1 (best)11.85□□□□□ -0.517e-6■■■■■ 86.4
SF3B1O75533 SLC11A2-209ENST00000547198 2486 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.747e-6■■■■■ 86.4
SF3B1O75533 CTNNA1-230ENST00000521724 2741 ntTSL 29.97□□□□□ -0.814e-6■■■■■ 86.4
SF3B1O75533 CTNNA1-210ENST00000518825 3536 ntTSL 1 (best) BASIC8.65□□□□□ -1.024e-6■■■■■ 86.4
SF3B1O75533 SLC11A2-202ENST00000262052 4132 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.057e-6■■■■■ 86.4
SF3B1O75533 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.184e-6■■■■■ 86.4
SF3B1O75533 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.27e-6■■■■■ 86.4
SF3B1O75533 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC7.44□□□□□ -1.224e-6■■■■■ 86.4
SF3B1O75533 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.68■■□□□ 1.227e-7■■■■■ 86.4
SF3B1O75533 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.157e-7■■■■■ 86.4
SF3B1O75533 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.8■■□□□ 1.087e-7■■■■■ 86.4
SF3B1O75533 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.85■□□□□ 0.617e-7■■■■■ 86.4
SF3B1O75533 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.72■□□□□ 0.597e-7■■■■■ 86.4
SF3B1O75533 TPD52L1-212ENST00000532978 2489 ntTSL 217.74■□□□□ 0.437e-7■■■■■ 86.4
SF3B1O75533 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.437e-7■■■■■ 86.4
SF3B1O75533 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.81■□□□□ 0.287e-7■■■■■ 86.4
SF3B1O75533 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16■□□□□ 0.157e-7■■■■■ 86.4
SF3B1O75533 NFATC3-209ENST00000561714 792 ntTSL 325.12■■□□□ 1.615e-6■■■■■ 86.3
SF3B1O75533 NFATC3-219ENST00000568466 737 ntTSL 223.11■■□□□ 1.295e-6■■■■■ 86.3
SF3B1O75533 NFATC3-206ENST00000539828 2484 ntTSL 217.4■□□□□ 0.385e-6■■■■■ 86.3
SF3B1O75533 NFATC3-217ENST00000566893 715 ntTSL 213.17□□□□□ -0.35e-6■■■■■ 86.3
SF3B1O75533 NFATC3-204ENST00000379165 3583 ntTSL 210.53□□□□□ -0.725e-6■■■■■ 86.3
SF3B1O75533 NFATC3-208ENST00000553077 3870 ntTSL 29.89□□□□□ -0.835e-6■■■■■ 86.3
SF3B1O75533 NFATC3-207ENST00000549350 3588 ntTSL 27.43□□□□□ -1.225e-6■■■■■ 86.3
SF3B1O75533 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.23□□□□□ -1.576e-6■■■■■ 86.3
SF3B1O75533 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.19□□□□□ -1.586e-6■■■■■ 86.3
SF3B1O75533 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.74□□□□□ -1.816e-6■■■■■ 86.3
SF3B1O75533 VARS2-209ENST00000477288 6054 ntTSL 218.84■□□□□ 0.612e-6■■■■■ 86.3
SF3B1O75533 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.249e-7■■■■■ 86.2
SF3B1O75533 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC13.81□□□□□ -0.29e-7■■■■■ 86.2
SF3B1O75533 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.229e-7■■■■■ 86.2
SF3B1O75533 DHX30-206ENST00000446256 3660 ntAPPRIS P2 TSL 2 BASIC12.9□□□□□ -0.349e-7■■■■■ 86.2
SF3B1O75533 DHX30-202ENST00000395745 3887 ntTSL 1 (best)11.39□□□□□ -0.599e-7■■■■■ 86.2
SF3B1O75533 HMBOX1-215ENST00000560599 1426 ntTSL 519.85■□□□□ 0.773e-6■■■■■ 86.2
SF3B1O75533 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.91■□□□□ 0.33e-6■■■■■ 86.2
SF3B1O75533 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.96■□□□□ 0.153e-6■■■■■ 86.2
SF3B1O75533 ROR2-208ENST00000550066 4360 ntTSL 210.18□□□□□ -0.782e-6■■■■■ 86.2
SF3B1O75533 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.53■□□□□ 0.241e-6■■■■■ 86.2
SF3B1O75533 ROR2-205ENST00000495386 664 ntTSL 315.3■□□□□ 0.041e-6■■■■■ 86.2
SF3B1O75533 ROR2-206ENST00000546883 501 ntTSL 314.26□□□□□ -0.131e-6■■■■■ 86.2
SF3B1O75533 ROR2-201ENST00000375708 4096 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.491e-6■■■■■ 86.2
SF3B1O75533 POLR2A-209ENST00000617998 6751 ntTSL 1 (best)11.64□□□□□ -0.551e-6■■■■■ 86.2
SF3B1O75533 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.12■□□□□ 0.813e-7■■■■■ 86.2
SF3B1O75533 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.733e-7■■■■■ 86.2
SF3B1O75533 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.61□□□□□ -0.073e-7■■■■■ 86.2
SF3B1O75533 RBM26-201ENST00000267229 3624 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.73e-7■■■■■ 86.2
SF3B1O75533 GIT1-202ENST00000335356 660 ntTSL 331.03■■■□□ 2.564e-7■■■■■ 86.2
SF3B1O75533 TRIOBP-209ENST00000428075 931 ntTSL 230.7■■■□□ 2.54e-7■■■■■ 86.2
SF3B1O75533 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.77■■■□□ 2.24e-7■■■■■ 86.2
SF3B1O75533 RNF220-201ENST00000335497 1203 ntTSL 528.69■■■□□ 2.185e-6■■■■■ 86.2
SF3B1O75533 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.12■■■□□ 2.094e-7■■■■■ 86.2
SF3B1O75533 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.084e-7■■■■■ 86.2
SF3B1O75533 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC27.69■■■□□ 2.024e-7■■■■■ 86.2
SF3B1O75533 STIP1-208ENST00000540501 880 ntTSL 327.58■■■□□ 2.017e-6■■■■■ 86.2
SF3B1O75533 ARF1-209ENST00000478424 1059 ntTSL 227.43■■□□□ 1.984e-7■■■■■ 86.2
SF3B1O75533 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.99■■□□□ 1.914e-7■■■■■ 86.2
SF3B1O75533 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.914e-7■■■■■ 86.2
SF3B1O75533 ARHGDIA-216ENST00000584397 622 ntTSL 226.96■■□□□ 1.914e-7■■■■■ 86.2
SF3B1O75533 NFKBIB-205ENST00000575359 543 ntTSL 326.72■■□□□ 1.874e-7■■■■■ 86.2
SF3B1O75533 FZR1-206ENST00000588327 675 ntTSL 326.58■■□□□ 1.854e-7■■■■■ 86.2
SF3B1O75533 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.48■■□□□ 1.834e-7■■■■■ 86.2
SF3B1O75533 DVL2-214ENST00000576949 995 ntTSL 426.17■■□□□ 1.783e-8■■■■■ 86.2
SF3B1O75533 ARHGDIA-213ENST00000583499 560 ntTSL 226.1■■□□□ 1.774e-7■■■■■ 86.2
SF3B1O75533 ARF1-208ENST00000478336 930 ntTSL 226.08■■□□□ 1.774e-7■■■■■ 86.2
SF3B1O75533 FRMD8-209ENST00000533782 677 ntTSL 526.05■■□□□ 1.764e-7■■■■■ 86.2
SF3B1O75533 ANKS3-205ENST00000586159 868 ntTSL 326■■□□□ 1.754e-7■■■■■ 86.2
SF3B1O75533 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.74e-7■■■■■ 86.2
SF3B1O75533 GTPBP3-227ENST00000602056 861 ntTSL 225.64■■□□□ 1.73e-13■■■■■ 86.2
SF3B1O75533 PHYKPL-211ENST00000494126 2297 ntTSL 1 (best)25.58■■□□□ 1.695e-6■■■■■ 86.2
SF3B1O75533 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.45■■□□□ 1.664e-7■■■■■ 86.2
Retrieved 100 of 46,956 protein–RNA pairs in 1233.2 ms