RNA–Protein interactions for RNA: ENST00000628915.2

R3HDM1-220, Transcript of R3H domain containing 1, humanhuman

TSL 5 BASIC

Gene R3HDM1, Length 4,325 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-220ENST00000628915 AEBP2Q6ZN18 517 aaPredicted RBP8.98□□□□□ -0.97
R3HDM1-220ENST00000628915 CHIC1Q5VXU3 224 aa8.77□□□□□ -1.01
R3HDM1-220ENST00000628915 SENP3Q9H4L4 574 aaPredicted RBP7.82□□□□□ -1.16
R3HDM1-220ENST00000628915 PHF23Q9BUL5 403 aaPredicted RBP7.66□□□□□ -1.18
R3HDM1-220ENST00000628915 FOXD1Q16676 465 aa7.15□□□□□ -1.26
R3HDM1-220ENST00000628915 SLC24A1O60721 1099 aa7.14□□□□□ -1.27
R3HDM1-220ENST00000628915 MYT1Q01538 1121 aa7.14□□□□□ -1.27
R3HDM1-220ENST00000628915 PLPPR3Q6T4P5 718 aa7.12□□□□□ -1.27
R3HDM1-220ENST00000628915 PELP1Q8IZL8 1130 aaKnown RBP7.04□□□□□ -1.28
R3HDM1-220ENST00000628915 NISCHQ9Y2I1 1504 aa6.87□□□□□ -1.31
R3HDM1-220ENST00000628915 TTBK1Q5TCY1 1321 aaPredicted RBP6.87□□□□□ -1.31
R3HDM1-220ENST00000628915 ERICH6Q7L0X2 663 aa6.8□□□□□ -1.32
R3HDM1-220ENST00000628915 MSH5O43196 834 aa6.79□□□□□ -1.32
R3HDM1-220ENST00000628915 PIAS4Q8N2W9 510 aaPredicted RBP6.77□□□□□ -1.32
R3HDM1-220ENST00000628915 ADRA2BP18089 450 aa6.75□□□□□ -1.33
R3HDM1-220ENST00000628915 PPP6R1Q9UPN7 881 aa6.72□□□□□ -1.33
R3HDM1-220ENST00000628915 CCDC180Q9P1Z9 1646 aa6.65□□□□□ -1.35
R3HDM1-220ENST00000628915 DAXXQ9UER7 740 aaPredicted RBP6.59□□□□□ -1.36
R3HDM1-220ENST00000628915 EHMT2Q96KQ7 1210 aa6.58□□□□□ -1.36
R3HDM1-220ENST00000628915 PRKCSHP14314 528 aaPredicted RBP6.57□□□□□ -1.36
R3HDM1-220ENST00000628915 RANGAP1P46060 587 aaPredicted RBP6.44□□□□□ -1.38
R3HDM1-220ENST00000628915 APLP2Q06481 763 aa6.4□□□□□ -1.39
R3HDM1-220ENST00000628915 EIF5BO60841 1220 aaKnown RBP6.39□□□□□ -1.39
R3HDM1-220ENST00000628915 SCAF1Q9H7N4 1312 aaKnown RBP6.38□□□□□ -1.39
R3HDM1-220ENST00000628915 MYO15BQ96JP2 1530 aa6.3□□□□□ -1.4
R3HDM1-220ENST00000628915 POTEDQ86YR6 584 aa6.28□□□□□ -1.4
R3HDM1-220ENST00000628915 RTN4Q9NQC3 1192 aaKnown RBP6.27□□□□□ -1.41
R3HDM1-220ENST00000628915 UNC13AQ9UPW8 1703 aa6.26□□□□□ -1.41
R3HDM1-220ENST00000628915 NCBP3Q53F19 620 aaKnown RBP6.26□□□□□ -1.41
R3HDM1-220ENST00000628915 BCL11AQ9H165 835 aa6.23□□□□□ -1.41
R3HDM1-220ENST00000628915 PPP4R3CPQ6ZMV5 832 aa6.22□□□□□ -1.41
R3HDM1-220ENST00000628915 SHROOM4Q9ULL8 1493 aa6.2□□□□□ -1.42
R3HDM1-220ENST00000628915 DMRT2Q9Y5R5 561 aa6.18□□□□□ -1.42
R3HDM1-220ENST00000628915 DCAF1Q9Y4B6 1507 aa6.14□□□□□ -1.43
R3HDM1-220ENST00000628915 MAPK8IP2Q13387 824 aaPredicted RBP6.13□□□□□ -1.43
R3HDM1-220ENST00000628915 CNKSR2Q8WXI2 1034 aa6.12□□□□□ -1.43
R3HDM1-220ENST00000628915 ARXQ96QS3 562 aa6.11□□□□□ -1.43
R3HDM1-220ENST00000628915 TULP1O00294 542 aaPredicted RBP6.1□□□□□ -1.43
R3HDM1-220ENST00000628915 AMER1Q5JTC6 1135 aaPredicted RBP6.08□□□□□ -1.44
R3HDM1-220ENST00000628915 HRCP23327 699 aa6.08□□□□□ -1.44
R3HDM1-220ENST00000628915 PODXL2Q9NZ53 605 aa6.07□□□□□ -1.44
R3HDM1-220ENST00000628915 CENPBP07199 599 aaPredicted RBP6.06□□□□□ -1.44
R3HDM1-220ENST00000628915 HOMEZQ8IX15 550 aa6.05□□□□□ -1.44
R3HDM1-220ENST00000628915 TIMELESSQ9UNS1 1208 aa6.05□□□□□ -1.44
R3HDM1-220ENST00000628915 NACADO15069 1562 aa6.04□□□□□ -1.44
R3HDM1-220ENST00000628915 PLEKHG5O94827 1062 aa6.03□□□□□ -1.44
R3HDM1-220ENST00000628915 RNF216Q9NWF9 866 aaPredicted RBP6.01□□□□□ -1.45
R3HDM1-220ENST00000628915 KLHL34Q8N239 644 aa6.01□□□□□ -1.45
R3HDM1-220ENST00000628915 FAM9AQ8IZU1 332 aaPredicted RBP6□□□□□ -1.45
R3HDM1-220ENST00000628915 HOXD11P31277 338 aaPredicted RBP6□□□□□ -1.45
R3HDM1-220ENST00000628915 RB1CC1Q8TDY2 1594 aa5.95□□□□□ -1.46
R3HDM1-220ENST00000628915 DCAF8L1A6NGE4 600 aa5.94□□□□□ -1.46
R3HDM1-220ENST00000628915 C14orf37Q86TY3 774 aa5.93□□□□□ -1.46
R3HDM1-220ENST00000628915 KCNA4P22459 653 aa5.93□□□□□ -1.46
R3HDM1-220ENST00000628915 NEFLP07196 543 aa5.93□□□□□ -1.46
R3HDM1-220ENST00000628915 TPRNQ4KMQ1 711 aa5.92□□□□□ -1.46
R3HDM1-220ENST00000628915 NPM2Q86SE8 214 aaKnown RBP5.91□□□□□ -1.46
R3HDM1-220ENST00000628915 NPM3O75607 178 aaKnown RBP5.89□□□□□ -1.47
R3HDM1-220ENST00000628915 DCAF8L2P0C7V8 631 aa5.89□□□□□ -1.47
R3HDM1-220ENST00000628915 TAOK2Q9UL54 1235 aa5.88□□□□□ -1.47
R3HDM1-220ENST00000628915 CSRNP3Q8WYN3 585 aa5.87□□□□□ -1.47
R3HDM1-220ENST00000628915 HAP1P54257 671 aaPredicted RBP5.87□□□□□ -1.47
R3HDM1-220ENST00000628915 PDIA4P13667 645 aaKnown RBP5.86□□□□□ -1.47
R3HDM1-220ENST00000628915 BCANQ96GW7 911 aa5.85□□□□□ -1.47
R3HDM1-220ENST00000628915 DNAJC5BQ9UF47 199 aa5.85□□□□□ -1.47
R3HDM1-220ENST00000628915 BICRAQ9NZM4 1560 aa5.85□□□□□ -1.47
R3HDM1-220ENST00000628915 PDE4CQ08493 712 aa5.84□□□□□ -1.47
R3HDM1-220ENST00000628915 PKNOX2Q96KN3 472 aa5.84□□□□□ -1.47
R3HDM1-220ENST00000628915 POLR3GLQ9BT43 218 aa5.84□□□□□ -1.47
R3HDM1-220ENST00000628915 ZCCHC6Q5VYS8 1495 aaKnown RBP5.81□□□□□ -1.48
R3HDM1-220ENST00000628915 PPARGC1BQ86YN6 1023 aaKnown RBP5.79□□□□□ -1.48
R3HDM1-220ENST00000628915 UBE2Q2Q8WVN8 375 aa5.79□□□□□ -1.48
R3HDM1-220ENST00000628915 GTF3C3Q9Y5Q9 886 aa5.78□□□□□ -1.48
R3HDM1-220ENST00000628915 CDK11BP21127 795 aaKnown RBP5.78□□□□□ -1.48
R3HDM1-220ENST00000628915 CDK11AQ9UQ88 783 aaPredicted RBP5.78□□□□□ -1.48
R3HDM1-220ENST00000628915 PCGF6Q9BYE7 350 aa5.77□□□□□ -1.49
R3HDM1-220ENST00000628915 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.77□□□□□ -1.492e-7■■□□□ 12.2
R3HDM1-220ENST00000628915 ZEB1P37275 1124 aaPredicted RBP5.76□□□□□ -1.49
R3HDM1-220ENST00000628915 GLIPR1L2Q4G1C9 344 aa5.76□□□□□ -1.49
R3HDM1-220ENST00000628915 SUPT5HO00267 1087 aaKnown RBP5.74□□□□□ -1.49
R3HDM1-220ENST00000628915 ANP32EQ9BTT0 268 aa5.72□□□□□ -1.49
R3HDM1-220ENST00000628915 CACNB1Q02641 598 aaPredicted RBP5.71□□□□□ -1.49
R3HDM1-220ENST00000628915 C1QBPQ07021 282 aaKnown RBP5.71□□□□□ -1.49
R3HDM1-220ENST00000628915 RNF39Q9H2S5 420 aa5.71□□□□□ -1.5
R3HDM1-220ENST00000628915 A0A0U1RQG5 324 aaPredicted RBP5.7□□□□□ -1.5
R3HDM1-220ENST00000628915 CLSPNQ9HAW4 1339 aa5.7□□□□□ -1.5
R3HDM1-220ENST00000628915 ANO8Q9HCE9 1232 aaPredicted RBP5.7□□□□□ -1.5
R3HDM1-220ENST00000628915 TAF7LQ5H9L4 462 aa5.69□□□□□ -1.5
R3HDM1-220ENST00000628915 PEG3Q9GZU2 1588 aa5.69□□□□□ -1.5
R3HDM1-220ENST00000628915 DHX37Q8IY37 1157 aaKnown RBP5.68□□□□□ -1.5
R3HDM1-220ENST00000628915 CHMP4AQ9BY43 222 aa5.68□□□□□ -1.5
R3HDM1-220ENST00000628915 ACIN1Q9UKV3 1341 aaKnown RBP5.68□□□□□ -1.5
R3HDM1-220ENST00000628915 FBXO3Q9UK99 471 aa5.68□□□□□ -1.5
R3HDM1-220ENST00000628915 ZNF326Q5BKZ1 582 aaKnown RBP5.67□□□□□ -1.5
R3HDM1-220ENST00000628915 CCDC136Q96JN2 1154 aa5.67□□□□□ -1.5
R3HDM1-220ENST00000628915 BRD2P25440 801 aaKnown RBP5.66□□□□□ -1.5
R3HDM1-220ENST00000628915 SLC4A1APQ9BWU0 796 aaKnown RBP5.65□□□□□ -1.51
R3HDM1-220ENST00000628915 BCL11BQ9C0K0 894 aaPredicted RBP5.65□□□□□ -1.51
R3HDM1-220ENST00000628915 SMARCA2P51531 1590 aa5.64□□□□□ -1.51
R3HDM1-220ENST00000628915 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms