RNA–Protein interactions for RNA: ENST00000518825.5

CTNNA1-210, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 3,536 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-210ENST00000518825 NISCHQ9Y2I1 1504 aa17.7■□□□□ 0.42
CTNNA1-210ENST00000518825 SHROOM4Q9ULL8 1493 aa15.08■□□□□ 0
CTNNA1-210ENST00000518825 CCDC180Q9P1Z9 1646 aa15□□□□□ -0.01
CTNNA1-210ENST00000518825 ZCCHC6Q5VYS8 1495 aaKnown RBP14.99□□□□□ -0.01
CTNNA1-210ENST00000518825 SUPT5HO00267 1087 aaKnown RBP14.76□□□□□ -0.05
CTNNA1-210ENST00000518825 DCAF8L2P0C7V8 631 aa14.56□□□□□ -0.08
CTNNA1-210ENST00000518825 DCAF1Q9Y4B6 1507 aa14.51□□□□□ -0.09
CTNNA1-210ENST00000518825 MYO15BQ96JP2 1530 aa14.45□□□□□ -0.1
CTNNA1-210ENST00000518825 CHIC1Q5VXU3 224 aa14.42□□□□□ -0.1
CTNNA1-210ENST00000518825 ABCC9O60706 1549 aa14.13□□□□□ -0.15
CTNNA1-210ENST00000518825 SCRIBQ14160 1630 aa14.08□□□□□ -0.15
CTNNA1-210ENST00000518825 RSF1Q96T23 1441 aaPredicted RBP14.03□□□□□ -0.16
CTNNA1-210ENST00000518825 LOC105371045A0A1W2PR82 267 aa14.02□□□□□ -0.17
CTNNA1-210ENST00000518825 HRCP23327 699 aa13.98□□□□□ -0.17
CTNNA1-210ENST00000518825 PCGF6Q9BYE7 350 aa13.95□□□□□ -0.18
CTNNA1-210ENST00000518825 RB1CC1Q8TDY2 1594 aa13.89□□□□□ -0.19
CTNNA1-210ENST00000518825 NACADO15069 1562 aa13.85□□□□□ -0.19
CTNNA1-210ENST00000518825 CECR2Q9BXF3 1484 aa13.84□□□□□ -0.19
CTNNA1-210ENST00000518825 MROH2BQ7Z745 1585 aa13.79□□□□□ -0.2
CTNNA1-210ENST00000518825 PPARGC1BQ86YN6 1023 aaKnown RBP13.75□□□□□ -0.21
CTNNA1-210ENST00000518825 TRIM41Q8WV44 630 aa13.73□□□□□ -0.21
CTNNA1-210ENST00000518825 WIZO95785 1651 aa13.71□□□□□ -0.21
CTNNA1-210ENST00000518825 TRIM26Q12899 539 aaPredicted RBP13.66□□□□□ -0.22
CTNNA1-210ENST00000518825 FAM9AQ8IZU1 332 aaPredicted RBP13.64□□□□□ -0.23
CTNNA1-210ENST00000518825 BAZ1AQ9NRL2 1556 aaPredicted RBP13.6□□□□□ -0.23
CTNNA1-210ENST00000518825 EIF4G1Q04637 1599 aaKnown RBP13.59□□□□□ -0.23
CTNNA1-210ENST00000518825 EHMT2Q96KQ7 1210 aa13.53□□□□□ -0.24
CTNNA1-210ENST00000518825 UNC13AQ9UPW8 1703 aa13.51□□□□□ -0.25
CTNNA1-210ENST00000518825 SMARCA4P51532 1647 aa13.47□□□□□ -0.25
CTNNA1-210ENST00000518825 TOP2AP11388 1531 aaKnown RBP13.46□□□□□ -0.26
CTNNA1-210ENST00000518825 CCDC88BA6NC98 1476 aa13.43□□□□□ -0.26
CTNNA1-210ENST00000518825 SMARCA2P51531 1590 aa13.42□□□□□ -0.26
CTNNA1-210ENST00000518825 ABCC8Q09428 1581 aa13.41□□□□□ -0.26
CTNNA1-210ENST00000518825 BICRAQ9NZM4 1560 aa13.35□□□□□ -0.27
CTNNA1-210ENST00000518825 SOGA1O94964 1423 aa13.29□□□□□ -0.28
CTNNA1-210ENST00000518825 PABPN1Q86U42 306 aaKnown RBP eCLIP13.29□□□□□ -0.28
CTNNA1-210ENST00000518825 ZEB1P37275 1124 aaPredicted RBP13.29□□□□□ -0.28
CTNNA1-210ENST00000518825 RUSC2Q8N2Y8 1516 aa13.26□□□□□ -0.29
CTNNA1-210ENST00000518825 PEG3Q9GZU2 1588 aa13.23□□□□□ -0.29
CTNNA1-210ENST00000518825 WRNQ14191 1432 aaPredicted RBP eCLIP13.2□□□□□ -0.3
CTNNA1-210ENST00000518825 CEP162Q5TB80 1403 aa13.19□□□□□ -0.3
CTNNA1-210ENST00000518825 TNIKQ9UKE5 1360 aa13.16□□□□□ -0.3
CTNNA1-210ENST00000518825 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.15□□□□□ -0.3
CTNNA1-210ENST00000518825 CSRNP3Q8WYN3 585 aa13.14□□□□□ -0.31
CTNNA1-210ENST00000518825 SYNJ1O43426 1573 aa13.12□□□□□ -0.31
CTNNA1-210ENST00000518825 EEA1Q15075 1411 aa13.12□□□□□ -0.31
CTNNA1-210ENST00000518825 ATAD2BQ9ULI0 1458 aa13.12□□□□□ -0.31
CTNNA1-210ENST00000518825 TTBK1Q5TCY1 1321 aaPredicted RBP13.09□□□□□ -0.31
CTNNA1-210ENST00000518825 GOLGA3Q08378 1498 aa13.06□□□□□ -0.32
CTNNA1-210ENST00000518825 UBTFP17480 764 aaKnown RBP13.05□□□□□ -0.32
CTNNA1-210ENST00000518825 CCER1Q8TC90 406 aaPredicted RBP13.04□□□□□ -0.32
CTNNA1-210ENST00000518825 BAZ1BQ9UIG0 1483 aaKnown RBP13.03□□□□□ -0.32
CTNNA1-210ENST00000518825 KIF21BO75037 1637 aa13□□□□□ -0.33
CTNNA1-210ENST00000518825 CEP164Q9UPV0 1460 aa12.98□□□□□ -0.33
CTNNA1-210ENST00000518825 RAPGEF2Q9Y4G8 1499 aa12.95□□□□□ -0.34
CTNNA1-210ENST00000518825 SCAF1Q9H7N4 1312 aaKnown RBP12.93□□□□□ -0.34
CTNNA1-210ENST00000518825 TOP2BQ02880 1626 aa12.93□□□□□ -0.34
CTNNA1-210ENST00000518825 CLIP1P30622 1438 aa12.92□□□□□ -0.34
CTNNA1-210ENST00000518825 BIVM-ERCC5R4GMW8 1640 aa12.89□□□□□ -0.35
CTNNA1-210ENST00000518825 VPS8Q8N3P4 1428 aa12.88□□□□□ -0.35
CTNNA1-210ENST00000518825 NCAPD3P42695 1498 aa12.85□□□□□ -0.35
CTNNA1-210ENST00000518825 HMGXB3Q12766 1538 aa12.83□□□□□ -0.35
CTNNA1-210ENST00000518825 DIEXFQ68CQ4 756 aaKnown RBP12.83□□□□□ -0.36
CTNNA1-210ENST00000518825 PRXQ9BXM0 1461 aa12.83□□□□□ -0.36
CTNNA1-210ENST00000518825 CUX1P39880 1505 aa12.83□□□□□ -0.36
CTNNA1-210ENST00000518825 RANGAP1P46060 587 aaPredicted RBP12.81□□□□□ -0.36
CTNNA1-210ENST00000518825 HNRNPUL2Q1KMD3 747 aaKnown RBP12.8□□□□□ -0.36
CTNNA1-210ENST00000518825 ERICH3Q5RHP9 1530 aa12.78□□□□□ -0.36
CTNNA1-210ENST00000518825 NEUROD1Q13562 356 aa12.78□□□□□ -0.36
CTNNA1-210ENST00000518825 ARAP1Q96P48 1450 aa12.78□□□□□ -0.36
CTNNA1-210ENST00000518825 CFTRP13569 1480 aa12.76□□□□□ -0.37
CTNNA1-210ENST00000518825 ACIN1Q9UKV3 1341 aaKnown RBP12.75□□□□□ -0.37
CTNNA1-210ENST00000518825 ZNF316A6NFI3 1004 aaPredicted RBP12.73□□□□□ -0.37
CTNNA1-210ENST00000518825 KANK4Q5T7N3 995 aaPredicted RBP12.71□□□□□ -0.37
CTNNA1-210ENST00000518825 KIF27Q86VH2 1401 aa12.68□□□□□ -0.38
CTNNA1-210ENST00000518825 APLP2Q06481 763 aa12.68□□□□□ -0.38
CTNNA1-210ENST00000518825 ARHGAP35Q9NRY4 1499 aa12.65□□□□□ -0.38
CTNNA1-210ENST00000518825 PRDM2Q13029 1718 aa12.64□□□□□ -0.39
CTNNA1-210ENST00000518825 IGF1RP08069 1367 aa12.62□□□□□ -0.39
CTNNA1-210ENST00000518825 DHX57Q6P158 1386 aaKnown RBP12.62□□□□□ -0.39
CTNNA1-210ENST00000518825 RRBP1Q9P2E9 1410 aaKnown RBP12.61□□□□□ -0.39
CTNNA1-210ENST00000518825 MIER1Q8N108 512 aa12.6□□□□□ -0.39
CTNNA1-210ENST00000518825 GTF3C3Q9Y5Q9 886 aa12.6□□□□□ -0.39
CTNNA1-210ENST00000518825 CUX2O14529 1486 aa12.58□□□□□ -0.39
CTNNA1-210ENST00000518825 CADPSQ9ULU8 1353 aa12.58□□□□□ -0.39
CTNNA1-210ENST00000518825 FGD5Q6ZNL6 1462 aa12.56□□□□□ -0.4
CTNNA1-210ENST00000518825 CENPBP07199 599 aaPredicted RBP12.56□□□□□ -0.4
CTNNA1-210ENST00000518825 CLSPNQ9HAW4 1339 aa12.53□□□□□ -0.4
CTNNA1-210ENST00000518825 CC2D2AQ9P2K1 1620 aa12.52□□□□□ -0.41
CTNNA1-210ENST00000518825 CCNB3Q8WWL7 1395 aa12.52□□□□□ -0.41
CTNNA1-210ENST00000518825 CARMIL1Q5VZK9 1371 aa12.51□□□□□ -0.41
CTNNA1-210ENST00000518825 YTHDC1Q96MU7 727 aaKnown RBP12.51□□□□□ -0.41
CTNNA1-210ENST00000518825 TIAM1Q13009 1591 aa12.49□□□□□ -0.41
CTNNA1-210ENST00000518825 PELP1Q8IZL8 1130 aaKnown RBP12.47□□□□□ -0.41
CTNNA1-210ENST00000518825 FANCD2Q9BXW9 1451 aa12.47□□□□□ -0.41
CTNNA1-210ENST00000518825 MAP3K1Q13233 1512 aa12.47□□□□□ -0.41
CTNNA1-210ENST00000518825 RAD54L2Q9Y4B4 1467 aa12.46□□□□□ -0.42
CTNNA1-210ENST00000518825 LRRC9Q6ZRR7 1453 aa12.45□□□□□ -0.42
CTNNA1-210ENST00000518825 PHLDB1Q86UU1 1377 aa12.45□□□□□ -0.42
CTNNA1-210ENST00000518825 ITGAEP38570 1179 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms