Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 AL929302.1-201ENST00000426556 871 ntBASIC14.62□□□□□ -0.07
VPS13AQ96RL7 ABHD17AP9-201ENST00000561925 548 ntBASIC14.62□□□□□ -0.07
VPS13AQ96RL7 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 AC138701.2-201ENST00000553634 226 ntBASIC14.62□□□□□ -0.07
VPS13AQ96RL7 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 MIR6125-201ENST00000618986 96 ntBASIC14.62□□□□□ -0.07
VPS13AQ96RL7 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 DBET-201ENST00000630918 3363 ntBASIC14.62□□□□□ -0.07
VPS13AQ96RL7 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 LINC02447-202ENST00000501888 2146 ntBASIC14.62□□□□□ -0.07
VPS13AQ96RL7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS13AQ96RL7 API5-208ENST00000531273 1868 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AC112504.1-201ENST00000623415 1841 ntBASIC14.61□□□□□ -0.07
VPS13AQ96RL7 RNA5SP359-201ENST00000364838 113 ntBASIC14.61□□□□□ -0.07
VPS13AQ96RL7 JPT2-203ENST00000382711 894 ntTSL 4 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 CTBP2P8-201ENST00000422584 1330 ntBASIC14.61□□□□□ -0.07
VPS13AQ96RL7 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AC010900.1-201ENST00000449849 1296 ntBASIC14.61□□□□□ -0.07
VPS13AQ96RL7 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 USB1-205ENST00000561743 1135 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 LINC00528-201ENST00000600723 2160 ntBASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 SURF4-203ENST00000371991 715 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AC113347.2-201ENST00000512350 279 ntBASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS13AQ96RL7 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms