RNA–Protein interactions for RNA: ENST00000409375.1

AP1S3-204, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 3 BASIC

Gene AP1S3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-204ENST00000409375 NISCHQ9Y2I1 1504 aa35.81■■■■□ 3.32
AP1S3-204ENST00000409375 CCDC180Q9P1Z9 1646 aa31.64■■■□□ 2.66
AP1S3-204ENST00000409375 ABCC9O60706 1549 aa30.29■■■□□ 2.44
AP1S3-204ENST00000409375 ZCCHC6Q5VYS8 1495 aaKnown RBP29.96■■■□□ 2.39
AP1S3-204ENST00000409375 DCAF1Q9Y4B6 1507 aa29.71■■■□□ 2.35
AP1S3-204ENST00000409375 DCAF8L2P0C7V8 631 aa29.69■■■□□ 2.34
AP1S3-204ENST00000409375 MYO15BQ96JP2 1530 aa29.62■■■□□ 2.33
AP1S3-204ENST00000409375 NACADO15069 1562 aa29.6■■■□□ 2.33
AP1S3-204ENST00000409375 RB1CC1Q8TDY2 1594 aa29.49■■■□□ 2.31
AP1S3-204ENST00000409375 SCRIBQ14160 1630 aa28.85■■■□□ 2.21
AP1S3-204ENST00000409375 UNC13AQ9UPW8 1703 aa28.74■■■□□ 2.19
AP1S3-204ENST00000409375 SHROOM4Q9ULL8 1493 aa28.62■■■□□ 2.17
AP1S3-204ENST00000409375 BICRAQ9NZM4 1560 aa28.46■■■□□ 2.15
AP1S3-204ENST00000409375 PABPN1Q86U42 306 aaKnown RBP eCLIP28.37■■■□□ 2.13
AP1S3-204ENST00000409375 BAZ1AQ9NRL2 1556 aaPredicted RBP27.77■■■□□ 2.04
AP1S3-204ENST00000409375 CECR2Q9BXF3 1484 aa27.76■■■□□ 2.04
AP1S3-204ENST00000409375 EIF4G1Q04637 1599 aaKnown RBP27.72■■■□□ 2.03
AP1S3-204ENST00000409375 SMARCA4P51532 1647 aa27.67■■■□□ 2.02
AP1S3-204ENST00000409375 MROH2BQ7Z745 1585 aa27.57■■■□□ 2
AP1S3-204ENST00000409375 RSF1Q96T23 1441 aaPredicted RBP27.49■■□□□ 1.99
AP1S3-204ENST00000409375 CC2D2AQ9P2K1 1620 aa27.44■■□□□ 1.98
AP1S3-204ENST00000409375 SMARCA2P51531 1590 aa27.43■■□□□ 1.98
AP1S3-204ENST00000409375 PEG3Q9GZU2 1588 aa27.4■■□□□ 1.98
AP1S3-204ENST00000409375 ATAD2BQ9ULI0 1458 aa27.34■■□□□ 1.97
AP1S3-204ENST00000409375 WIZO95785 1651 aa27.32■■□□□ 1.96
AP1S3-204ENST00000409375 SUPT5HO00267 1087 aaKnown RBP27.27■■□□□ 1.96
AP1S3-204ENST00000409375 NCAPD3P42695 1498 aa27.25■■□□□ 1.95
AP1S3-204ENST00000409375 HMGXB3Q12766 1538 aa27.22■■□□□ 1.95
AP1S3-204ENST00000409375 BAZ1BQ9UIG0 1483 aaKnown RBP27.21■■□□□ 1.95
AP1S3-204ENST00000409375 DNAJC5BQ9UF47 199 aa27.13■■□□□ 1.93
AP1S3-204ENST00000409375 TOP2AP11388 1531 aaKnown RBP27.12■■□□□ 1.93
AP1S3-204ENST00000409375 CCDC88BA6NC98 1476 aa26.74■■□□□ 1.87
AP1S3-204ENST00000409375 CADPSQ9ULU8 1353 aa26.5■■□□□ 1.83
AP1S3-204ENST00000409375 LAMC3Q9Y6N6 1575 aa26.49■■□□□ 1.83
AP1S3-204ENST00000409375 CFTRP13569 1480 aa26.47■■□□□ 1.83
AP1S3-204ENST00000409375 PRDM2Q13029 1718 aa26.38■■□□□ 1.81
AP1S3-204ENST00000409375 NESP48681 1621 aa26.35■■□□□ 1.81
AP1S3-204ENST00000409375 PDS5BQ9NTI5 1447 aa26.3■■□□□ 1.8
AP1S3-204ENST00000409375 FANCD2Q9BXW9 1451 aa26.2■■□□□ 1.78
AP1S3-204ENST00000409375 ERCC6Q03468 1493 aa26.15■■□□□ 1.78
AP1S3-204ENST00000409375 CEP164Q9UPV0 1460 aa26.15■■□□□ 1.78
AP1S3-204ENST00000409375 KIF21AQ7Z4S6 1674 aa26.12■■□□□ 1.77
AP1S3-204ENST00000409375 MRC2Q9UBG0 1479 aa25.97■■□□□ 1.75
AP1S3-204ENST00000409375 ABCC8Q09428 1581 aa25.96■■□□□ 1.75
AP1S3-204ENST00000409375 WRNQ14191 1432 aaPredicted RBP eCLIP25.96■■□□□ 1.75
AP1S3-204ENST00000409375 DNMBPQ6XZF7 1577 aa25.9■■□□□ 1.74
AP1S3-204ENST00000409375 THOC2Q8NI27 1593 aaKnown RBP25.87■■□□□ 1.73
AP1S3-204ENST00000409375 URB2Q14146 1524 aaKnown RBP25.86■■□□□ 1.73
AP1S3-204ENST00000409375 WDR62O43379 1518 aa25.84■■□□□ 1.73
AP1S3-204ENST00000409375 TOPBP1Q92547 1522 aa25.84■■□□□ 1.73
AP1S3-204ENST00000409375 CUX1P39880 1505 aa25.83■■□□□ 1.73
AP1S3-204ENST00000409375 TOP2BQ02880 1626 aa25.83■■□□□ 1.73
AP1S3-204ENST00000409375 BIVM-ERCC5R4GMW8 1640 aa25.83■■□□□ 1.73
AP1S3-204ENST00000409375 SYNJ1O43426 1573 aa25.81■■□□□ 1.72
AP1S3-204ENST00000409375 CHIC1Q5VXU3 224 aa25.79■■□□□ 1.72
AP1S3-204ENST00000409375 TRIM41Q8WV44 630 aa25.78■■□□□ 1.72
AP1S3-204ENST00000409375 FGD5Q6ZNL6 1462 aa25.69■■□□□ 1.7
AP1S3-204ENST00000409375 POLA1P09884 1462 aaPredicted RBP25.66■■□□□ 1.7
AP1S3-204ENST00000409375 CUX2O14529 1486 aa25.64■■□□□ 1.69
AP1S3-204ENST00000409375 SOGA1O94964 1423 aa25.58■■□□□ 1.69
AP1S3-204ENST00000409375 IFT140Q96RY7 1462 aa25.57■■□□□ 1.68
AP1S3-204ENST00000409375 TARBP1Q13395 1621 aaKnown RBP25.5■■□□□ 1.67
AP1S3-204ENST00000409375 RAD54L2Q9Y4B4 1467 aa25.5■■□□□ 1.67
AP1S3-204ENST00000409375 ABCA10Q8WWZ4 1543 aa25.48■■□□□ 1.67
AP1S3-204ENST00000409375 WDR97A6NE52 1622 aa25.45■■□□□ 1.67
AP1S3-204ENST00000409375 KIF27Q86VH2 1401 aa25.4■■□□□ 1.66
AP1S3-204ENST00000409375 EEA1Q15075 1411 aa25.36■■□□□ 1.65
AP1S3-204ENST00000409375 TDRD9Q8NDG6 1382 aaKnown RBP25.32■■□□□ 1.64
AP1S3-204ENST00000409375 ABCA5Q8WWZ7 1642 aa25.32■■□□□ 1.64
AP1S3-204ENST00000409375 ZNF608Q9ULD9 1512 aaPredicted RBP25.31■■□□□ 1.64
AP1S3-204ENST00000409375 GAPVD1Q14C86 1478 aa25.3■■□□□ 1.64
AP1S3-204ENST00000409375 EIF4G3O43432 1585 aaKnown RBP25.3■■□□□ 1.64
AP1S3-204ENST00000409375 AQRO60306 1485 aaKnown RBP eCLIP25.26■■□□□ 1.63
AP1S3-204ENST00000409375 GRIN2BQ13224 1484 aa25.24■■□□□ 1.63
AP1S3-204ENST00000409375 PBRM1Q86U86 1689 aa25.22■■□□□ 1.63
AP1S3-204ENST00000409375 ERICH3Q5RHP9 1530 aa25.22■■□□□ 1.63
AP1S3-204ENST00000409375 RUSC2Q8N2Y8 1516 aa25.21■■□□□ 1.63
AP1S3-204ENST00000409375 FAM9AQ8IZU1 332 aaPredicted RBP25.17■■□□□ 1.62
AP1S3-204ENST00000409375 CSRNP3Q8WYN3 585 aa25.16■■□□□ 1.62
AP1S3-204ENST00000409375 CUL7Q14999 1698 aa25.13■■□□□ 1.61
AP1S3-204ENST00000409375 IGF1RP08069 1367 aa25.13■■□□□ 1.61
AP1S3-204ENST00000409375 MAGI1Q96QZ7 1491 aaPredicted RBP25.12■■□□□ 1.61
AP1S3-204ENST00000409375 SNAPC4Q5SXM2 1469 aa25.08■■□□□ 1.6
AP1S3-204ENST00000409375 FHAD1B1AJZ9 1412 aa25.05■■□□□ 1.6
AP1S3-204ENST00000409375 CARMIL1Q5VZK9 1371 aa25.05■■□□□ 1.6
AP1S3-204ENST00000409375 ADAMTS12P58397 1594 aa25.04■■□□□ 1.6
AP1S3-204ENST00000409375 PRXQ9BXM0 1461 aa25.01■■□□□ 1.59
AP1S3-204ENST00000409375 SYNJ2O15056 1496 aa25■■□□□ 1.59
AP1S3-204ENST00000409375 KIF21BO75037 1637 aa25■■□□□ 1.59
AP1S3-204ENST00000409375 RAPGEF2Q9Y4G8 1499 aa24.98■■□□□ 1.59
AP1S3-204ENST00000409375 CHMP7Q8WUX9 453 aaPredicted RBP24.95■■□□□ 1.58
AP1S3-204ENST00000409375 GOLGA3Q08378 1498 aa24.91■■□□□ 1.58
AP1S3-204ENST00000409375 FBLN2P98095 1184 aa24.9■■□□□ 1.58
AP1S3-204ENST00000409375 GRIN2AQ12879 1464 aa24.89■■□□□ 1.58
AP1S3-204ENST00000409375 CHD1O14646 1710 aa24.86■■□□□ 1.57
AP1S3-204ENST00000409375 UBTFP17480 764 aaKnown RBP24.79■■□□□ 1.56
AP1S3-204ENST00000409375 EHMT2Q96KQ7 1210 aa24.76■■□□□ 1.55
AP1S3-204ENST00000409375 NUP160Q12769 1436 aa24.74■■□□□ 1.55
AP1S3-204ENST00000409375 CTTNBP2Q8WZ74 1663 aa24.74■■□□□ 1.55
AP1S3-204ENST00000409375 CEP170Q5SW79 1584 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 1194.5 ms