RNA–Protein interactions for RNA: ENST00000589165.5

ERCC1-208, Transcript of ERCC excision repair 1, endonuclease non-catalytic subunit, humanhuman

APPRIS P1 TSL 5 BASIC

Gene ERCC1, Length 1,453 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC1-208ENST00000589165 NISCHQ9Y2I1 1504 aa33.94■■■■□ 3.02
ERCC1-208ENST00000589165 CCDC180Q9P1Z9 1646 aa30.18■■■□□ 2.42
ERCC1-208ENST00000589165 ABCC9O60706 1549 aa29.7■■■□□ 2.34
ERCC1-208ENST00000589165 RB1CC1Q8TDY2 1594 aa28.51■■■□□ 2.15
ERCC1-208ENST00000589165 NACADO15069 1562 aa28.47■■■□□ 2.15
ERCC1-208ENST00000589165 DCAF8L2P0C7V8 631 aa28.39■■■□□ 2.13
ERCC1-208ENST00000589165 MYO15BQ96JP2 1530 aa28.31■■■□□ 2.12
ERCC1-208ENST00000589165 ZCCHC6Q5VYS8 1495 aaKnown RBP28.24■■■□□ 2.11
ERCC1-208ENST00000589165 DCAF1Q9Y4B6 1507 aa28.11■■■□□ 2.09
ERCC1-208ENST00000589165 PABPN1Q86U42 306 aaKnown RBP eCLIP27.75■■■□□ 2.03
ERCC1-208ENST00000589165 UNC13AQ9UPW8 1703 aa27.74■■■□□ 2.03
ERCC1-208ENST00000589165 BICRAQ9NZM4 1560 aa27.65■■■□□ 2.02
ERCC1-208ENST00000589165 SCRIBQ14160 1630 aa27.5■■□□□ 1.99
ERCC1-208ENST00000589165 DNAJC5BQ9UF47 199 aa27.44■■□□□ 1.98
ERCC1-208ENST00000589165 SHROOM4Q9ULL8 1493 aa27.42■■□□□ 1.98
ERCC1-208ENST00000589165 EIF4G1Q04637 1599 aaKnown RBP26.94■■□□□ 1.9
ERCC1-208ENST00000589165 CC2D2AQ9P2K1 1620 aa26.84■■□□□ 1.89
ERCC1-208ENST00000589165 CECR2Q9BXF3 1484 aa26.73■■□□□ 1.87
ERCC1-208ENST00000589165 SMARCA4P51532 1647 aa26.33■■□□□ 1.81
ERCC1-208ENST00000589165 NCAPD3P42695 1498 aa26.32■■□□□ 1.8
ERCC1-208ENST00000589165 BAZ1AQ9NRL2 1556 aaPredicted RBP26.31■■□□□ 1.8
ERCC1-208ENST00000589165 ATAD2BQ9ULI0 1458 aa26.27■■□□□ 1.8
ERCC1-208ENST00000589165 SMARCA2P51531 1590 aa26.22■■□□□ 1.79
ERCC1-208ENST00000589165 MROH2BQ7Z745 1585 aa26.13■■□□□ 1.77
ERCC1-208ENST00000589165 HMGXB3Q12766 1538 aa26.13■■□□□ 1.77
ERCC1-208ENST00000589165 PEG3Q9GZU2 1588 aa26.12■■□□□ 1.77
ERCC1-208ENST00000589165 BAZ1BQ9UIG0 1483 aaKnown RBP26.02■■□□□ 1.76
ERCC1-208ENST00000589165 RSF1Q96T23 1441 aaPredicted RBP25.82■■□□□ 1.72
ERCC1-208ENST00000589165 WIZO95785 1651 aa25.79■■□□□ 1.72
ERCC1-208ENST00000589165 NESP48681 1621 aa25.65■■□□□ 1.7
ERCC1-208ENST00000589165 ERCC6Q03468 1493 aa25.61■■□□□ 1.69
ERCC1-208ENST00000589165 LAMC3Q9Y6N6 1575 aa25.58■■□□□ 1.69
ERCC1-208ENST00000589165 TOP2AP11388 1531 aaKnown RBP25.56■■□□□ 1.68
ERCC1-208ENST00000589165 CADPSQ9ULU8 1353 aa25.54■■□□□ 1.68
ERCC1-208ENST00000589165 PDS5BQ9NTI5 1447 aa25.46■■□□□ 1.67
ERCC1-208ENST00000589165 CUX2O14529 1486 aa25.43■■□□□ 1.66
ERCC1-208ENST00000589165 CFTRP13569 1480 aa25.35■■□□□ 1.65
ERCC1-208ENST00000589165 CCDC88BA6NC98 1476 aa25.28■■□□□ 1.64
ERCC1-208ENST00000589165 THOC2Q8NI27 1593 aaKnown RBP25.28■■□□□ 1.64
ERCC1-208ENST00000589165 KIF21AQ7Z4S6 1674 aa25.27■■□□□ 1.64
ERCC1-208ENST00000589165 FANCD2Q9BXW9 1451 aa25.2■■□□□ 1.63
ERCC1-208ENST00000589165 MRC2Q9UBG0 1479 aa25.18■■□□□ 1.62
ERCC1-208ENST00000589165 CEP164Q9UPV0 1460 aa25.17■■□□□ 1.62
ERCC1-208ENST00000589165 WDR62O43379 1518 aa25.09■■□□□ 1.61
ERCC1-208ENST00000589165 SUPT5HO00267 1087 aaKnown RBP25.01■■□□□ 1.59
ERCC1-208ENST00000589165 PRDM2Q13029 1718 aa24.98■■□□□ 1.59
ERCC1-208ENST00000589165 URB2Q14146 1524 aaKnown RBP24.95■■□□□ 1.58
ERCC1-208ENST00000589165 DNAJC5Q9H3Z4 198 aa24.86■■□□□ 1.57
ERCC1-208ENST00000589165 ABCC8Q09428 1581 aa24.79■■□□□ 1.56
ERCC1-208ENST00000589165 TOPBP1Q92547 1522 aa24.77■■□□□ 1.56
ERCC1-208ENST00000589165 DNMBPQ6XZF7 1577 aa24.72■■□□□ 1.55
ERCC1-208ENST00000589165 IFT140Q96RY7 1462 aa24.68■■□□□ 1.54
ERCC1-208ENST00000589165 POLA1P09884 1462 aaPredicted RBP24.56■■□□□ 1.52
ERCC1-208ENST00000589165 ZNF608Q9ULD9 1512 aaPredicted RBP24.55■■□□□ 1.52
ERCC1-208ENST00000589165 CUX1P39880 1505 aa24.53■■□□□ 1.52
ERCC1-208ENST00000589165 TARBP1Q13395 1621 aaKnown RBP24.5■■□□□ 1.51
ERCC1-208ENST00000589165 SOGA1O94964 1423 aa24.47■■□□□ 1.51
ERCC1-208ENST00000589165 FGD5Q6ZNL6 1462 aa24.46■■□□□ 1.51
ERCC1-208ENST00000589165 RAD54L2Q9Y4B4 1467 aa24.44■■□□□ 1.5
ERCC1-208ENST00000589165 AQRO60306 1485 aaKnown RBP eCLIP24.41■■□□□ 1.52e-7■■■■■ 39
ERCC1-208ENST00000589165 EIF4G3O43432 1585 aaKnown RBP24.41■■□□□ 1.5
ERCC1-208ENST00000589165 OSCARQ8IYS5 282 aa24.38■■□□□ 1.49
ERCC1-208ENST00000589165 TDRD9Q8NDG6 1382 aaKnown RBP24.34■■□□□ 1.49
ERCC1-208ENST00000589165 WRNQ14191 1432 aaPredicted RBP eCLIP24.34■■□□□ 1.49
ERCC1-208ENST00000589165 WDR97A6NE52 1622 aa24.32■■□□□ 1.48
ERCC1-208ENST00000589165 TOP2BQ02880 1626 aa24.27■■□□□ 1.48
ERCC1-208ENST00000589165 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
ERCC1-208ENST00000589165 BIVM-ERCC5R4GMW8 1640 aa24.23■■□□□ 1.47
ERCC1-208ENST00000589165 SYNJ1O43426 1573 aa24.23■■□□□ 1.47
ERCC1-208ENST00000589165 GRIN2BQ13224 1484 aa24.2■■□□□ 1.46
ERCC1-208ENST00000589165 GAPVD1Q14C86 1478 aa24.18■■□□□ 1.46
ERCC1-208ENST00000589165 SNAPC4Q5SXM2 1469 aa24.16■■□□□ 1.46
ERCC1-208ENST00000589165 MAGI1Q96QZ7 1491 aaPredicted RBP24.16■■□□□ 1.46
ERCC1-208ENST00000589165 FBLN2P98095 1184 aa24.13■■□□□ 1.45
ERCC1-208ENST00000589165 ABCA5Q8WWZ7 1642 aa24.11■■□□□ 1.45
ERCC1-208ENST00000589165 CHD1O14646 1710 aa24.07■■□□□ 1.44
ERCC1-208ENST00000589165 CHMP7Q8WUX9 453 aaPredicted RBP24.07■■□□□ 1.44
ERCC1-208ENST00000589165 SYNJ2O15056 1496 aa24.06■■□□□ 1.44
ERCC1-208ENST00000589165 PBRM1Q86U86 1689 aa24.02■■□□□ 1.44
ERCC1-208ENST00000589165 ERICH3Q5RHP9 1530 aa23.95■■□□□ 1.42
ERCC1-208ENST00000589165 ARHGEF11O15085 1522 aa23.94■■□□□ 1.42
ERCC1-208ENST00000589165 FHAD1B1AJZ9 1412 aa23.91■■□□□ 1.42
ERCC1-208ENST00000589165 RIMBP3CA6NJZ7 1639 aa23.91■■□□□ 1.42
ERCC1-208ENST00000589165 RIMBP3BA6NNM3 1639 aa23.91■■□□□ 1.42
ERCC1-208ENST00000589165 RIMBP3Q9UFD9 1639 aa23.91■■□□□ 1.42
ERCC1-208ENST00000589165 CLASP1Q7Z460 1538 aa23.91■■□□□ 1.42
ERCC1-208ENST00000589165 ADAMTS12P58397 1594 aa23.9■■□□□ 1.42
ERCC1-208ENST00000589165 TRIM41Q8WV44 630 aa23.9■■□□□ 1.42
ERCC1-208ENST00000589165 GRIN2AQ12879 1464 aa23.87■■□□□ 1.41
ERCC1-208ENST00000589165 KIF27Q86VH2 1401 aa23.85■■□□□ 1.41
ERCC1-208ENST00000589165 NUP160Q12769 1436 aa23.81■■□□□ 1.4
ERCC1-208ENST00000589165 IGF1RP08069 1367 aa23.8■■□□□ 1.4
ERCC1-208ENST00000589165 ARAP1Q96P48 1450 aa23.74■■□□□ 1.39
ERCC1-208ENST00000589165 CYB5RLQ6IPT4 315 aa23.74■■□□□ 1.39
ERCC1-208ENST00000589165 CEP170Q5SW79 1584 aa23.73■■□□□ 1.39
ERCC1-208ENST00000589165 CUL7Q14999 1698 aa23.65■■□□□ 1.38
ERCC1-208ENST00000589165 CARMIL1Q5VZK9 1371 aa23.63■■□□□ 1.37
ERCC1-208ENST00000589165 SHROOM2Q13796 1616 aa23.59■■□□□ 1.37
ERCC1-208ENST00000589165 JPH4Q96JJ6 628 aa23.56■■□□□ 1.36
ERCC1-208ENST00000589165 RUSC2Q8N2Y8 1516 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms