RNA–Protein interactions for RNA: ENST00000411850.5

TOM1-204, Transcript of target of myb1 membrane trafficking protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TOM1, Length 2,390 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1-204ENST00000411850 NISCHQ9Y2I1 1504 aa35.46■■■■□ 3.27
TOM1-204ENST00000411850 CCDC180Q9P1Z9 1646 aa30.69■■■□□ 2.5
TOM1-204ENST00000411850 ZCCHC6Q5VYS8 1495 aaKnown RBP29.88■■■□□ 2.37
TOM1-204ENST00000411850 SHROOM4Q9ULL8 1493 aa29.7■■■□□ 2.34
TOM1-204ENST00000411850 DCAF1Q9Y4B6 1507 aa29.3■■■□□ 2.28
TOM1-204ENST00000411850 SUPT5HO00267 1087 aaKnown RBP29.16■■■□□ 2.26
TOM1-204ENST00000411850 DCAF8L2P0C7V8 631 aa29.15■■■□□ 2.26
TOM1-204ENST00000411850 MYO15BQ96JP2 1530 aa28.79■■■□□ 2.2
TOM1-204ENST00000411850 ABCC9O60706 1549 aa28.68■■■□□ 2.18
TOM1-204ENST00000411850 CHIC1Q5VXU3 224 aa28.5■■■□□ 2.15
TOM1-204ENST00000411850 NACADO15069 1562 aa28.49■■■□□ 2.15
TOM1-204ENST00000411850 SCRIBQ14160 1630 aa28.31■■■□□ 2.12
TOM1-204ENST00000411850 RB1CC1Q8TDY2 1594 aa28.14■■■□□ 2.1
TOM1-204ENST00000411850 RSF1Q96T23 1441 aaPredicted RBP27.78■■■□□ 2.04
TOM1-204ENST00000411850 HRCP23327 699 aa27.68■■■□□ 2.02
TOM1-204ENST00000411850 UNC13AQ9UPW8 1703 aa27.64■■■□□ 2.01
TOM1-204ENST00000411850 CECR2Q9BXF3 1484 aa27.55■■■□□ 2
TOM1-204ENST00000411850 LOC105371045A0A1W2PR82 267 aa27.53■■■□□ 2
TOM1-204ENST00000411850 PCGF6Q9BYE7 350 aa27.53■■■□□ 2
TOM1-204ENST00000411850 MROH2BQ7Z745 1585 aa27.43■■□□□ 1.98
TOM1-204ENST00000411850 BICRAQ9NZM4 1560 aa27.34■■□□□ 1.97
TOM1-204ENST00000411850 BAZ1AQ9NRL2 1556 aaPredicted RBP27.33■■□□□ 1.97
TOM1-204ENST00000411850 TRIM41Q8WV44 630 aa27.26■■□□□ 1.95
TOM1-204ENST00000411850 WIZO95785 1651 aa27.23■■□□□ 1.95
TOM1-204ENST00000411850 SMARCA4P51532 1647 aa27.16■■□□□ 1.94
TOM1-204ENST00000411850 TRIM26Q12899 539 aaPredicted RBP27.15■■□□□ 1.94
TOM1-204ENST00000411850 PABPN1Q86U42 306 aaKnown RBP eCLIP27.15■■□□□ 1.94
TOM1-204ENST00000411850 TOP2AP11388 1531 aaKnown RBP26.93■■□□□ 1.9
TOM1-204ENST00000411850 PPARGC1BQ86YN6 1023 aaKnown RBP26.92■■□□□ 1.9
TOM1-204ENST00000411850 FAM9AQ8IZU1 332 aaPredicted RBP26.89■■□□□ 1.9
TOM1-204ENST00000411850 EIF4G1Q04637 1599 aaKnown RBP26.87■■□□□ 1.89
TOM1-204ENST00000411850 PEG3Q9GZU2 1588 aa26.82■■□□□ 1.88
TOM1-204ENST00000411850 SMARCA2P51531 1590 aa26.71■■□□□ 1.87
TOM1-204ENST00000411850 CCDC88BA6NC98 1476 aa26.69■■□□□ 1.86
TOM1-204ENST00000411850 ZEB1P37275 1124 aaPredicted RBP26.63■■□□□ 1.85
TOM1-204ENST00000411850 ATAD2BQ9ULI0 1458 aa26.62■■□□□ 1.85
TOM1-204ENST00000411850 EHMT2Q96KQ7 1210 aa26.54■■□□□ 1.84
TOM1-204ENST00000411850 BAZ1BQ9UIG0 1483 aaKnown RBP26.48■■□□□ 1.83
TOM1-204ENST00000411850 ABCC8Q09428 1581 aa26.46■■□□□ 1.83
TOM1-204ENST00000411850 NCAPD3P42695 1498 aa26.32■■□□□ 1.8
TOM1-204ENST00000411850 HMGXB3Q12766 1538 aa26.3■■□□□ 1.8
TOM1-204ENST00000411850 EEA1Q15075 1411 aa26.27■■□□□ 1.8
TOM1-204ENST00000411850 WRNQ14191 1432 aaPredicted RBP eCLIP26.25■■□□□ 1.79
TOM1-204ENST00000411850 SOGA1O94964 1423 aa26.23■■□□□ 1.79
TOM1-204ENST00000411850 TNIKQ9UKE5 1360 aa26.18■■□□□ 1.78
TOM1-204ENST00000411850 CEP162Q5TB80 1403 aa26.16■■□□□ 1.78
TOM1-204ENST00000411850 CSRNP3Q8WYN3 585 aa26.12■■□□□ 1.77
TOM1-204ENST00000411850 RUSC2Q8N2Y8 1516 aa26.07■■□□□ 1.76
TOM1-204ENST00000411850 GOLGA3Q08378 1498 aa26.02■■□□□ 1.76
TOM1-204ENST00000411850 CC2D2AQ9P2K1 1620 aa25.96■■□□□ 1.75
TOM1-204ENST00000411850 SYNJ1O43426 1573 aa25.95■■□□□ 1.74
TOM1-204ENST00000411850 UBTFP17480 764 aaKnown RBP25.92■■□□□ 1.74
TOM1-204ENST00000411850 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.92■■□□□ 1.74
TOM1-204ENST00000411850 CCER1Q8TC90 406 aaPredicted RBP25.9■■□□□ 1.74
TOM1-204ENST00000411850 KIF21BO75037 1637 aa25.89■■□□□ 1.74
TOM1-204ENST00000411850 CEP164Q9UPV0 1460 aa25.88■■□□□ 1.73
TOM1-204ENST00000411850 CFTRP13569 1480 aa25.86■■□□□ 1.73
TOM1-204ENST00000411850 TOP2BQ02880 1626 aa25.77■■□□□ 1.72
TOM1-204ENST00000411850 BIVM-ERCC5R4GMW8 1640 aa25.74■■□□□ 1.71
TOM1-204ENST00000411850 TTBK1Q5TCY1 1321 aaPredicted RBP25.72■■□□□ 1.71
TOM1-204ENST00000411850 PRDM2Q13029 1718 aa25.72■■□□□ 1.71
TOM1-204ENST00000411850 CLIP1P30622 1438 aa25.68■■□□□ 1.7
TOM1-204ENST00000411850 CADPSQ9ULU8 1353 aa25.67■■□□□ 1.7
TOM1-204ENST00000411850 CUX1P39880 1505 aa25.62■■□□□ 1.69
TOM1-204ENST00000411850 VPS8Q8N3P4 1428 aa25.61■■□□□ 1.69
TOM1-204ENST00000411850 RAPGEF2Q9Y4G8 1499 aa25.61■■□□□ 1.69
TOM1-204ENST00000411850 ERICH3Q5RHP9 1530 aa25.49■■□□□ 1.67
TOM1-204ENST00000411850 PRXQ9BXM0 1461 aa25.45■■□□□ 1.66
TOM1-204ENST00000411850 SCAF1Q9H7N4 1312 aaKnown RBP25.44■■□□□ 1.66
TOM1-204ENST00000411850 DIEXFQ68CQ4 756 aaKnown RBP25.43■■□□□ 1.66
TOM1-204ENST00000411850 APLP2Q06481 763 aa25.4■■□□□ 1.66
TOM1-204ENST00000411850 FANCD2Q9BXW9 1451 aa25.39■■□□□ 1.65
TOM1-204ENST00000411850 LAMC3Q9Y6N6 1575 aa25.33■■□□□ 1.65
TOM1-204ENST00000411850 NESP48681 1621 aa25.33■■□□□ 1.65
TOM1-204ENST00000411850 HNRNPUL2Q1KMD3 747 aaKnown RBP25.32■■□□□ 1.64
TOM1-204ENST00000411850 KIF27Q86VH2 1401 aa25.32■■□□□ 1.64
TOM1-204ENST00000411850 ARAP1Q96P48 1450 aa25.29■■□□□ 1.64
TOM1-204ENST00000411850 ZNF316A6NFI3 1004 aaPredicted RBP25.29■■□□□ 1.64
TOM1-204ENST00000411850 ACIN1Q9UKV3 1341 aaKnown RBP25.26■■□□□ 1.63
TOM1-204ENST00000411850 FGD5Q6ZNL6 1462 aa25.25■■□□□ 1.63
TOM1-204ENST00000411850 DNAJC5BQ9UF47 199 aa25.25■■□□□ 1.63
TOM1-204ENST00000411850 RANGAP1P46060 587 aaPredicted RBP25.24■■□□□ 1.63
TOM1-204ENST00000411850 DNMBPQ6XZF7 1577 aa25.23■■□□□ 1.63
TOM1-204ENST00000411850 CUX2O14529 1486 aa25.17■■□□□ 1.62
TOM1-204ENST00000411850 TOPBP1Q92547 1522 aa25.17■■□□□ 1.62
TOM1-204ENST00000411850 NEUROD1Q13562 356 aa25.16■■□□□ 1.62
TOM1-204ENST00000411850 CENPBP07199 599 aaPredicted RBP25.14■■□□□ 1.62
TOM1-204ENST00000411850 PDS5BQ9NTI5 1447 aa25.12■■□□□ 1.61
TOM1-204ENST00000411850 IGF1RP08069 1367 aa25.08■■□□□ 1.61
TOM1-204ENST00000411850 POLA1P09884 1462 aaPredicted RBP25.08■■□□□ 1.61
TOM1-204ENST00000411850 PELP1Q8IZL8 1130 aaKnown RBP25.08■■□□□ 1.61
TOM1-204ENST00000411850 CLSPNQ9HAW4 1339 aa25.08■■□□□ 1.6
TOM1-204ENST00000411850 URB2Q14146 1524 aaKnown RBP25.07■■□□□ 1.6
TOM1-204ENST00000411850 ARHGAP35Q9NRY4 1499 aa25.06■■□□□ 1.6
TOM1-204ENST00000411850 KANK4Q5T7N3 995 aaPredicted RBP25.05■■□□□ 1.6
TOM1-204ENST00000411850 RRBP1Q9P2E9 1410 aaKnown RBP25.05■■□□□ 1.6
TOM1-204ENST00000411850 ABCA10Q8WWZ4 1543 aa25.05■■□□□ 1.6
TOM1-204ENST00000411850 RAD54L2Q9Y4B4 1467 aa25.02■■□□□ 1.6
TOM1-204ENST00000411850 KIF21AQ7Z4S6 1674 aa25.01■■□□□ 1.59
TOM1-204ENST00000411850 DHX57Q6P158 1386 aaKnown RBP24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms