RNA–Protein interactions for RNA: ENST00000541297.6

CLPTM1-202, Transcript of CLPTM1, transmembrane protein, humanhuman

TSL 2 BASIC

Gene CLPTM1, Length 2,732 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1-202ENST00000541297 NISCHQ9Y2I1 1504 aa34.11■■■■□ 3.05
CLPTM1-202ENST00000541297 CCDC180Q9P1Z9 1646 aa29.65■■■□□ 2.34
CLPTM1-202ENST00000541297 ZCCHC6Q5VYS8 1495 aaKnown RBP28.66■■■□□ 2.18
CLPTM1-202ENST00000541297 DCAF8L2P0C7V8 631 aa28.4■■■□□ 2.14
CLPTM1-202ENST00000541297 ABCC9O60706 1549 aa28.17■■■□□ 2.1
CLPTM1-202ENST00000541297 SHROOM4Q9ULL8 1493 aa28.12■■■□□ 2.09
CLPTM1-202ENST00000541297 DCAF1Q9Y4B6 1507 aa28.08■■■□□ 2.08
CLPTM1-202ENST00000541297 MYO15BQ96JP2 1530 aa27.68■■■□□ 2.02
CLPTM1-202ENST00000541297 NACADO15069 1562 aa27.6■■■□□ 2.01
CLPTM1-202ENST00000541297 SCRIBQ14160 1630 aa27.46■■□□□ 1.99
CLPTM1-202ENST00000541297 RB1CC1Q8TDY2 1594 aa27.39■■□□□ 1.98
CLPTM1-202ENST00000541297 SUPT5HO00267 1087 aaKnown RBP27.07■■□□□ 1.92
CLPTM1-202ENST00000541297 UNC13AQ9UPW8 1703 aa26.97■■□□□ 1.91
CLPTM1-202ENST00000541297 PABPN1Q86U42 306 aaKnown RBP eCLIP26.63■■□□□ 1.85
CLPTM1-202ENST00000541297 BICRAQ9NZM4 1560 aa26.61■■□□□ 1.85
CLPTM1-202ENST00000541297 CECR2Q9BXF3 1484 aa26.6■■□□□ 1.85
CLPTM1-202ENST00000541297 RSF1Q96T23 1441 aaPredicted RBP26.52■■□□□ 1.84
CLPTM1-202ENST00000541297 MROH2BQ7Z745 1585 aa26.42■■□□□ 1.82
CLPTM1-202ENST00000541297 BAZ1AQ9NRL2 1556 aaPredicted RBP26.32■■□□□ 1.8
CLPTM1-202ENST00000541297 WIZO95785 1651 aa26.26■■□□□ 1.79
CLPTM1-202ENST00000541297 SMARCA4P51532 1647 aa26.23■■□□□ 1.79
CLPTM1-202ENST00000541297 TOP2AP11388 1531 aaKnown RBP25.87■■□□□ 1.73
CLPTM1-202ENST00000541297 CHIC1Q5VXU3 224 aa25.83■■□□□ 1.73
CLPTM1-202ENST00000541297 PEG3Q9GZU2 1588 aa25.82■■□□□ 1.72
CLPTM1-202ENST00000541297 EIF4G1Q04637 1599 aaKnown RBP25.81■■□□□ 1.72
CLPTM1-202ENST00000541297 ATAD2BQ9ULI0 1458 aa25.77■■□□□ 1.72
CLPTM1-202ENST00000541297 SMARCA2P51531 1590 aa25.72■■□□□ 1.71
CLPTM1-202ENST00000541297 CCDC88BA6NC98 1476 aa25.66■■□□□ 1.7
CLPTM1-202ENST00000541297 BAZ1BQ9UIG0 1483 aaKnown RBP25.65■■□□□ 1.7
CLPTM1-202ENST00000541297 NCAPD3P42695 1498 aa25.48■■□□□ 1.67
CLPTM1-202ENST00000541297 HMGXB3Q12766 1538 aa25.45■■□□□ 1.66
CLPTM1-202ENST00000541297 CC2D2AQ9P2K1 1620 aa25.44■■□□□ 1.66
CLPTM1-202ENST00000541297 TRIM41Q8WV44 630 aa25.36■■□□□ 1.65
CLPTM1-202ENST00000541297 ABCC8Q09428 1581 aa25.24■■□□□ 1.63
CLPTM1-202ENST00000541297 FAM9AQ8IZU1 332 aaPredicted RBP25.03■■□□□ 1.6
CLPTM1-202ENST00000541297 LOC105371045A0A1W2PR82 267 aa24.97■■□□□ 1.59
CLPTM1-202ENST00000541297 CFTRP13569 1480 aa24.97■■□□□ 1.59
CLPTM1-202ENST00000541297 WRNQ14191 1432 aaPredicted RBP eCLIP24.96■■□□□ 1.59
CLPTM1-202ENST00000541297 DNAJC5BQ9UF47 199 aa24.92■■□□□ 1.58
CLPTM1-202ENST00000541297 SYNJ1O43426 1573 aa24.9■■□□□ 1.58
CLPTM1-202ENST00000541297 CADPSQ9ULU8 1353 aa24.88■■□□□ 1.57
CLPTM1-202ENST00000541297 PRDM2Q13029 1718 aa24.88■■□□□ 1.57
CLPTM1-202ENST00000541297 EHMT2Q96KQ7 1210 aa24.79■■□□□ 1.56
CLPTM1-202ENST00000541297 NESP48681 1621 aa24.77■■□□□ 1.56
CLPTM1-202ENST00000541297 SOGA1O94964 1423 aa24.75■■□□□ 1.55
CLPTM1-202ENST00000541297 TOP2BQ02880 1626 aa24.73■■□□□ 1.55
CLPTM1-202ENST00000541297 HRCP23327 699 aa24.72■■□□□ 1.55
CLPTM1-202ENST00000541297 BIVM-ERCC5R4GMW8 1640 aa24.7■■□□□ 1.54
CLPTM1-202ENST00000541297 CUX1P39880 1505 aa24.69■■□□□ 1.54
CLPTM1-202ENST00000541297 RUSC2Q8N2Y8 1516 aa24.68■■□□□ 1.54
CLPTM1-202ENST00000541297 FANCD2Q9BXW9 1451 aa24.64■■□□□ 1.54
CLPTM1-202ENST00000541297 LAMC3Q9Y6N6 1575 aa24.62■■□□□ 1.53
CLPTM1-202ENST00000541297 EEA1Q15075 1411 aa24.53■■□□□ 1.52
CLPTM1-202ENST00000541297 CSRNP3Q8WYN3 585 aa24.51■■□□□ 1.51
CLPTM1-202ENST00000541297 CEP164Q9UPV0 1460 aa24.47■■□□□ 1.51
CLPTM1-202ENST00000541297 KIF21AQ7Z4S6 1674 aa24.45■■□□□ 1.51
CLPTM1-202ENST00000541297 PCGF6Q9BYE7 350 aa24.45■■□□□ 1.5
CLPTM1-202ENST00000541297 PDS5BQ9NTI5 1447 aa24.44■■□□□ 1.5
CLPTM1-202ENST00000541297 FGD5Q6ZNL6 1462 aa24.41■■□□□ 1.5
CLPTM1-202ENST00000541297 DNMBPQ6XZF7 1577 aa24.4■■□□□ 1.5
CLPTM1-202ENST00000541297 TOPBP1Q92547 1522 aa24.37■■□□□ 1.49
CLPTM1-202ENST00000541297 URB2Q14146 1524 aaKnown RBP24.34■■□□□ 1.49
CLPTM1-202ENST00000541297 KIF27Q86VH2 1401 aa24.3■■□□□ 1.48
CLPTM1-202ENST00000541297 UBTFP17480 764 aaKnown RBP24.3■■□□□ 1.48
CLPTM1-202ENST00000541297 GOLGA3Q08378 1498 aa24.29■■□□□ 1.48
CLPTM1-202ENST00000541297 KIF21BO75037 1637 aa24.28■■□□□ 1.48
CLPTM1-202ENST00000541297 CUX2O14529 1486 aa24.28■■□□□ 1.48
CLPTM1-202ENST00000541297 POLA1P09884 1462 aaPredicted RBP24.28■■□□□ 1.48
CLPTM1-202ENST00000541297 RAD54L2Q9Y4B4 1467 aa24.26■■□□□ 1.47
CLPTM1-202ENST00000541297 PPARGC1BQ86YN6 1023 aaKnown RBP24.24■■□□□ 1.47
CLPTM1-202ENST00000541297 RAPGEF2Q9Y4G8 1499 aa24.23■■□□□ 1.47
CLPTM1-202ENST00000541297 TNIKQ9UKE5 1360 aa24.21■■□□□ 1.47
CLPTM1-202ENST00000541297 CEP162Q5TB80 1403 aa24.16■■□□□ 1.46
CLPTM1-202ENST00000541297 PRXQ9BXM0 1461 aa24.14■■□□□ 1.46
CLPTM1-202ENST00000541297 MRC2Q9UBG0 1479 aa24.13■■□□□ 1.45
CLPTM1-202ENST00000541297 ABCA10Q8WWZ4 1543 aa24.13■■□□□ 1.45
CLPTM1-202ENST00000541297 ERCC6Q03468 1493 aa24.11■■□□□ 1.45
CLPTM1-202ENST00000541297 IGF1RP08069 1367 aa24.1■■□□□ 1.45
CLPTM1-202ENST00000541297 WDR97A6NE52 1622 aa24.08■■□□□ 1.45
CLPTM1-202ENST00000541297 ERICH3Q5RHP9 1530 aa24.08■■□□□ 1.45
CLPTM1-202ENST00000541297 RANGAP1P46060 587 aaPredicted RBP24.04■■□□□ 1.44
CLPTM1-202ENST00000541297 TDRD9Q8NDG6 1382 aaKnown RBP24.02■■□□□ 1.44
CLPTM1-202ENST00000541297 TARBP1Q13395 1621 aaKnown RBP24.01■■□□□ 1.43
CLPTM1-202ENST00000541297 WDR62O43379 1518 aa24■■□□□ 1.43
CLPTM1-202ENST00000541297 CARMIL1Q5VZK9 1371 aa23.99■■□□□ 1.43
CLPTM1-202ENST00000541297 ABCA5Q8WWZ7 1642 aa23.96■■□□□ 1.43
CLPTM1-202ENST00000541297 THOC2Q8NI27 1593 aaKnown RBP23.95■■□□□ 1.42
CLPTM1-202ENST00000541297 CLIP1P30622 1438 aa23.94■■□□□ 1.42
CLPTM1-202ENST00000541297 GAPVD1Q14C86 1478 aa23.93■■□□□ 1.42
CLPTM1-202ENST00000541297 CUL7Q14999 1698 aa23.87■■□□□ 1.41
CLPTM1-202ENST00000541297 AQRO60306 1485 aaKnown RBP eCLIP23.85■■□□□ 1.411e-6■■■■■ 37
CLPTM1-202ENST00000541297 IFT140Q96RY7 1462 aa23.83■■□□□ 1.41
CLPTM1-202ENST00000541297 PBRM1Q86U86 1689 aa23.82■■□□□ 1.4
CLPTM1-202ENST00000541297 ZNF608Q9ULD9 1512 aaPredicted RBP23.82■■□□□ 1.4
CLPTM1-202ENST00000541297 TRIM26Q12899 539 aaPredicted RBP23.78■■□□□ 1.4
CLPTM1-202ENST00000541297 TTBK1Q5TCY1 1321 aaPredicted RBP23.72■■□□□ 1.39
CLPTM1-202ENST00000541297 VPS8Q8N3P4 1428 aa23.71■■□□□ 1.39
CLPTM1-202ENST00000541297 EIF4G3O43432 1585 aaKnown RBP23.71■■□□□ 1.39
CLPTM1-202ENST00000541297 ARAP1Q96P48 1450 aa23.7■■□□□ 1.38
CLPTM1-202ENST00000541297 GRIN2BQ13224 1484 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms