Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
HMGB1P09429 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB1P09429 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB1P09429 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGB1P09429 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.98■□□□□ 0.47
HMGB1P09429 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.98■□□□□ 0.47
HMGB1P09429 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 AL162726.2-201ENST00000438986 1017 ntBASIC17.98■□□□□ 0.47
HMGB1P09429 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGB1P09429 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.98■□□□□ 0.47
HMGB1P09429 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
HMGB1P09429 DUX4L47-201ENST00000566374 394 ntBASIC17.98■□□□□ 0.47
HMGB1P09429 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HMGB1P09429 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB1P09429 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.98■□□□□ 0.47
HMGB1P09429 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.98■□□□□ 0.47
HMGB1P09429 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB1P09429 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB1P09429 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGB1P09429 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HMGB1P09429 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.98■□□□□ 0.47
HMGB1P09429 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
HMGB1P09429 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC17.98■□□□□ 0.47
HMGB1P09429 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB1P09429 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB1P09429 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB1P09429 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 AC106881.1-201ENST00000605849 3329 ntBASIC17.97■□□□□ 0.47
HMGB1P09429 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
HMGB1P09429 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB1P09429 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGB1P09429 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
HMGB1P09429 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB1P09429 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.97■□□□□ 0.47
HMGB1P09429 AC022616.1-201ENST00000518688 554 ntBASIC17.97■□□□□ 0.47
HMGB1P09429 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
HMGB1P09429 AC008494.3-201ENST00000606615 944 ntBASIC17.97■□□□□ 0.47
HMGB1P09429 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.97■□□□□ 0.47
HMGB1P09429 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB1P09429 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
HMGB1P09429 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGB1P09429 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGB1P09429 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HMGB1P09429 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGB1P09429 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGB1P09429 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGB1P09429 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGB1P09429 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGB1P09429 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGB1P09429 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms