RNA–Protein interactions for RNA: ENST00000529308.5

USP35-203, Transcript of ubiquitin specific peptidase 35, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP35, Length 4,216 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-203ENST00000529308 DCAF8L2P0C7V8 631 aa27.56■■■□□ 2
USP35-203ENST00000529308 NISCHQ9Y2I1 1504 aa27.38■■□□□ 1.97
USP35-203ENST00000529308 SUPT5HO00267 1087 aaKnown RBP26.47■■□□□ 1.83
USP35-203ENST00000529308 SHROOM4Q9ULL8 1493 aa26.3■■□□□ 1.8
USP35-203ENST00000529308 EHMT2Q96KQ7 1210 aa25.52■■□□□ 1.68
USP35-203ENST00000529308 FAM9AQ8IZU1 332 aaPredicted RBP24.93■■□□□ 1.58
USP35-203ENST00000529308 PCGF6Q9BYE7 350 aa24.63■■□□□ 1.53
USP35-203ENST00000529308 TTBK1Q5TCY1 1321 aaPredicted RBP24.56■■□□□ 1.52
USP35-203ENST00000529308 TRIM41Q8WV44 630 aa24.3■■□□□ 1.48
USP35-203ENST00000529308 RANGAP1P46060 587 aaPredicted RBP24.25■■□□□ 1.47
USP35-203ENST00000529308 APLP2Q06481 763 aa24.06■■□□□ 1.44
USP35-203ENST00000529308 PPARGC1BQ86YN6 1023 aaKnown RBP24.04■■□□□ 1.44
USP35-203ENST00000529308 LOC105371045A0A1W2PR82 267 aa23.98■■□□□ 1.43
USP35-203ENST00000529308 CHIC1Q5VXU3 224 aa23.9■■□□□ 1.42
USP35-203ENST00000529308 UBTFP17480 764 aaKnown RBP23.84■■□□□ 1.41
USP35-203ENST00000529308 CCER1Q8TC90 406 aaPredicted RBP23.72■■□□□ 1.39
USP35-203ENST00000529308 ATP1B4Q9UN42 357 aaPredicted RBP23.64■■□□□ 1.38
USP35-203ENST00000529308 ABCC9O60706 1549 aa23.42■■□□□ 1.34
USP35-203ENST00000529308 TRIM26Q12899 539 aaPredicted RBP23.41■■□□□ 1.34
USP35-203ENST00000529308 ZEB1P37275 1124 aaPredicted RBP23.36■■□□□ 1.33
USP35-203ENST00000529308 HRCP23327 699 aa23.35■■□□□ 1.33
USP35-203ENST00000529308 PABPN1Q86U42 306 aaKnown RBP eCLIP23.35■■□□□ 1.33
USP35-203ENST00000529308 YTHDC1Q96MU7 727 aaKnown RBP23.2■■□□□ 1.3
USP35-203ENST00000529308 ITGAEP38570 1179 aa23.17■■□□□ 1.3
USP35-203ENST00000529308 HNRNPUL2Q1KMD3 747 aaKnown RBP23.13■■□□□ 1.29
USP35-203ENST00000529308 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.06■■□□□ 1.28
USP35-203ENST00000529308 CENPBP07199 599 aaPredicted RBP23.05■■□□□ 1.28
USP35-203ENST00000529308 PELP1Q8IZL8 1130 aaKnown RBP22.97■■□□□ 1.27
USP35-203ENST00000529308 ZCCHC6Q5VYS8 1495 aaKnown RBP22.7■■□□□ 1.22
USP35-203ENST00000529308 CNGB1Q14028 1251 aaPredicted RBP22.61■■□□□ 1.21
USP35-203ENST00000529308 SCRIBQ14160 1630 aa22.53■■□□□ 1.2
USP35-203ENST00000529308 POLR3GLQ9BT43 218 aa22.51■■□□□ 1.19
USP35-203ENST00000529308 DIEXFQ68CQ4 756 aaKnown RBP22.5■■□□□ 1.19
USP35-203ENST00000529308 FAM50AQ14320 339 aaKnown RBP22.47■■□□□ 1.19
USP35-203ENST00000529308 CSRNP3Q8WYN3 585 aa22.46■■□□□ 1.19
USP35-203ENST00000529308 P3H3Q8IVL6 736 aa22.4■■□□□ 1.18
USP35-203ENST00000529308 NEFLP07196 543 aa22.38■■□□□ 1.17
USP35-203ENST00000529308 MYO15BQ96JP2 1530 aa22.36■■□□□ 1.17
USP35-203ENST00000529308 NEUROD1Q13562 356 aa22.34■■□□□ 1.17
USP35-203ENST00000529308 MYT1LQ9UL68 1186 aa22.32■■□□□ 1.16
USP35-203ENST00000529308 ARID3CA6NKF2 412 aa22.28■■□□□ 1.16
USP35-203ENST00000529308 ERICH6Q7L0X2 663 aa22.2■■□□□ 1.14
USP35-203ENST00000529308 FBLN2P98095 1184 aa22.18■■□□□ 1.14
USP35-203ENST00000529308 TRIM52Q96A61 297 aa22.16■■□□□ 1.14
USP35-203ENST00000529308 CCDC180Q9P1Z9 1646 aa22.1■■□□□ 1.13
USP35-203ENST00000529308 RSF1Q96T23 1441 aaPredicted RBP22.1■■□□□ 1.13
USP35-203ENST00000529308 GTF3C3Q9Y5Q9 886 aa22.04■■□□□ 1.12
USP35-203ENST00000529308 ZNF316A6NFI3 1004 aaPredicted RBP22.01■■□□□ 1.11
USP35-203ENST00000529308 ZNF326Q5BKZ1 582 aaKnown RBP21.99■■□□□ 1.11
USP35-203ENST00000529308 DCAF1Q9Y4B6 1507 aa21.95■■□□□ 1.1
USP35-203ENST00000529308 BCANQ96GW7 911 aa21.93■■□□□ 1.1
USP35-203ENST00000529308 CECR2Q9BXF3 1484 aa21.83■■□□□ 1.09
USP35-203ENST00000529308 SLC4A1APQ9BWU0 796 aaKnown RBP21.81■■□□□ 1.08
USP35-203ENST00000529308 ZNF777Q9ULD5 760 aaPredicted RBP21.8■■□□□ 1.08
USP35-203ENST00000529308 ACIN1Q9UKV3 1341 aaKnown RBP21.73■■□□□ 1.07
USP35-203ENST00000529308 ANP32CO43423 234 aa21.7■■□□□ 1.06
USP35-203ENST00000529308 CHIC2Q9UKJ5 165 aa21.69■■□□□ 1.06
USP35-203ENST00000529308 HIRIP3Q9BW71 556 aaPredicted RBP21.65■■□□□ 1.06
USP35-203ENST00000529308 CLIP1P30622 1438 aa21.63■■□□□ 1.05
USP35-203ENST00000529308 DDX10Q13206 875 aaKnown RBP21.63■■□□□ 1.05
USP35-203ENST00000529308 CEP162Q5TB80 1403 aa21.59■■□□□ 1.05
USP35-203ENST00000529308 RB1CC1Q8TDY2 1594 aa21.59■■□□□ 1.05
USP35-203ENST00000529308 WRNQ14191 1432 aaPredicted RBP eCLIP21.54■■□□□ 1.04
USP35-203ENST00000529308 MIER1Q8N108 512 aa21.52■■□□□ 1.04
USP35-203ENST00000529308 NACADO15069 1562 aa21.5■■□□□ 1.03
USP35-203ENST00000529308 SCAF1Q9H7N4 1312 aaKnown RBP21.48■■□□□ 1.03
USP35-203ENST00000529308 SOGA1O94964 1423 aa21.47■■□□□ 1.03
USP35-203ENST00000529308 CDK11AQ9UQ88 783 aaPredicted RBP21.44■■□□□ 1.02
USP35-203ENST00000529308 TONSLQ96HA7 1378 aa21.44■■□□□ 1.02
USP35-203ENST00000529308 MROH2BQ7Z745 1585 aa21.43■■□□□ 1.02
USP35-203ENST00000529308 BAZ1BQ9UIG0 1483 aaKnown RBP21.4■■□□□ 1.02
USP35-203ENST00000529308 DAXXQ9UER7 740 aaPredicted RBP21.4■■□□□ 1.02
USP35-203ENST00000529308 RRP7BPQ9NSQ0 103 aa21.39■■□□□ 1.01
USP35-203ENST00000529308 MYT1Q01538 1121 aa21.38■■□□□ 1.01
USP35-203ENST00000529308 GOLGA3Q08378 1498 aa21.37■■□□□ 1.01
USP35-203ENST00000529308 MTUS2Q5JR59 1369 aa21.37■■□□□ 1.01
USP35-203ENST00000529308 TNIKQ9UKE5 1360 aa21.35■■□□□ 1.01
USP35-203ENST00000529308 CLSPNQ9HAW4 1339 aa21.33■■□□□ 1.01
USP35-203ENST00000529308 FAM9BQ8IZU0 186 aa21.32■■□□□ 1
USP35-203ENST00000529308 BAZ1AQ9NRL2 1556 aaPredicted RBP21.31■■□□□ 1
USP35-203ENST00000529308 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.31■■□□□ 1
USP35-203ENST00000529308 HNRNPUQ00839 825 aaKnown RBP eCLIP21.31■■□□□ 1
USP35-203ENST00000529308 FKBP8Q14318 412 aa21.31■■□□□ 1
USP35-203ENST00000529308 SALL2Q9Y467 1007 aaPredicted RBP21.31■■□□□ 1
USP35-203ENST00000529308 CHMP7Q8WUX9 453 aaPredicted RBP21.29■■□□□ 1
USP35-203ENST00000529308 EEA1Q15075 1411 aa21.28■■□□□ 1
USP35-203ENST00000529308 ABCC8Q09428 1581 aa21.28■■□□□ 1
USP35-203ENST00000529308 KDM2AQ9Y2K7 1162 aa21.28■■□□□ 1
USP35-203ENST00000529308 SENP3-EIF4A1A0A087X0R7 540 aa21.26■□□□□ 0.99
USP35-203ENST00000529308 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
USP35-203ENST00000529308 SIN3AQ96ST3 1273 aa21.24■□□□□ 0.99
USP35-203ENST00000529308 BCL11AQ9H165 835 aa21.22■□□□□ 0.99
USP35-203ENST00000529308 CHGAP10645 457 aaKnown RBP21.21■□□□□ 0.99
USP35-203ENST00000529308 KIF27Q86VH2 1401 aa21.2■□□□□ 0.98
USP35-203ENST00000529308 CEP164Q9UPV0 1460 aa21.18■□□□□ 0.98
USP35-203ENST00000529308 SENP3Q9H4L4 574 aaPredicted RBP21.16■□□□□ 0.98
USP35-203ENST00000529308 KANK4Q5T7N3 995 aaPredicted RBP21.16■□□□□ 0.98
USP35-203ENST00000529308 IRX6P78412 446 aaPredicted RBP21.15■□□□□ 0.98
USP35-203ENST00000529308 TSPY4P0CV99 314 aa21.15■□□□□ 0.98
USP35-203ENST00000529308 TSPY10P0CW01 314 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms