RNA–Protein interactions for RNA: ENST00000426538.6

GINS3-203, Transcript of GINS complex subunit 3, humanhuman

TSL 1 (best) BASIC

Gene GINS3, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GINS3-203ENST00000426538 NISCHQ9Y2I1 1504 aa34.51■■■■□ 3.11
GINS3-203ENST00000426538 CCDC180Q9P1Z9 1646 aa30.16■■■□□ 2.42
GINS3-203ENST00000426538 ZCCHC6Q5VYS8 1495 aaKnown RBP28.92■■■□□ 2.22
GINS3-203ENST00000426538 ABCC9O60706 1549 aa28.74■■■□□ 2.19
GINS3-203ENST00000426538 DCAF8L2P0C7V8 631 aa28.71■■■□□ 2.19
GINS3-203ENST00000426538 DCAF1Q9Y4B6 1507 aa28.53■■■□□ 2.16
GINS3-203ENST00000426538 MYO15BQ96JP2 1530 aa28.27■■■□□ 2.12
GINS3-203ENST00000426538 NACADO15069 1562 aa28.18■■■□□ 2.1
GINS3-203ENST00000426538 SHROOM4Q9ULL8 1493 aa28.04■■■□□ 2.08
GINS3-203ENST00000426538 RB1CC1Q8TDY2 1594 aa27.99■■■□□ 2.07
GINS3-203ENST00000426538 SCRIBQ14160 1630 aa27.72■■■□□ 2.03
GINS3-203ENST00000426538 UNC13AQ9UPW8 1703 aa27.34■■□□□ 1.97
GINS3-203ENST00000426538 PABPN1Q86U42 306 aaKnown RBP eCLIP27.1■■□□□ 1.93
GINS3-203ENST00000426538 BICRAQ9NZM4 1560 aa27.08■■□□□ 1.92
GINS3-203ENST00000426538 SUPT5HO00267 1087 aaKnown RBP26.94■■□□□ 1.9
GINS3-203ENST00000426538 CECR2Q9BXF3 1484 aa26.81■■□□□ 1.88
GINS3-203ENST00000426538 RSF1Q96T23 1441 aaPredicted RBP26.69■■□□□ 1.86
GINS3-203ENST00000426538 BAZ1AQ9NRL2 1556 aaPredicted RBP26.67■■□□□ 1.86
GINS3-203ENST00000426538 MROH2BQ7Z745 1585 aa26.63■■□□□ 1.85
GINS3-203ENST00000426538 SMARCA4P51532 1647 aa26.55■■□□□ 1.84
GINS3-203ENST00000426538 WIZO95785 1651 aa26.4■■□□□ 1.82
GINS3-203ENST00000426538 EIF4G1Q04637 1599 aaKnown RBP26.32■■□□□ 1.8
GINS3-203ENST00000426538 PEG3Q9GZU2 1588 aa26.23■■□□□ 1.79
GINS3-203ENST00000426538 SMARCA2P51531 1590 aa26.19■■□□□ 1.78
GINS3-203ENST00000426538 ATAD2BQ9ULI0 1458 aa26.19■■□□□ 1.78
GINS3-203ENST00000426538 TOP2AP11388 1531 aaKnown RBP26.13■■□□□ 1.77
GINS3-203ENST00000426538 BAZ1BQ9UIG0 1483 aaKnown RBP26.05■■□□□ 1.76
GINS3-203ENST00000426538 NCAPD3P42695 1498 aa26.01■■□□□ 1.75
GINS3-203ENST00000426538 CC2D2AQ9P2K1 1620 aa25.99■■□□□ 1.75
GINS3-203ENST00000426538 HMGXB3Q12766 1538 aa25.93■■□□□ 1.74
GINS3-203ENST00000426538 CCDC88BA6NC98 1476 aa25.88■■□□□ 1.73
GINS3-203ENST00000426538 CHIC1Q5VXU3 224 aa25.63■■□□□ 1.69
GINS3-203ENST00000426538 DNAJC5BQ9UF47 199 aa25.51■■□□□ 1.68
GINS3-203ENST00000426538 CFTRP13569 1480 aa25.37■■□□□ 1.65
GINS3-203ENST00000426538 TRIM41Q8WV44 630 aa25.37■■□□□ 1.65
GINS3-203ENST00000426538 CADPSQ9ULU8 1353 aa25.36■■□□□ 1.65
GINS3-203ENST00000426538 ABCC8Q09428 1581 aa25.25■■□□□ 1.63
GINS3-203ENST00000426538 PRDM2Q13029 1718 aa25.19■■□□□ 1.62
GINS3-203ENST00000426538 WRNQ14191 1432 aaPredicted RBP eCLIP25.16■■□□□ 1.62
GINS3-203ENST00000426538 LAMC3Q9Y6N6 1575 aa25.16■■□□□ 1.62
GINS3-203ENST00000426538 NESP48681 1621 aa25.14■■□□□ 1.62
GINS3-203ENST00000426538 FANCD2Q9BXW9 1451 aa25.05■■□□□ 1.6
GINS3-203ENST00000426538 PDS5BQ9NTI5 1447 aa25.02■■□□□ 1.6
GINS3-203ENST00000426538 SYNJ1O43426 1573 aa24.99■■□□□ 1.59
GINS3-203ENST00000426538 TOP2BQ02880 1626 aa24.94■■□□□ 1.58
GINS3-203ENST00000426538 CEP164Q9UPV0 1460 aa24.92■■□□□ 1.58
GINS3-203ENST00000426538 CUX1P39880 1505 aa24.91■■□□□ 1.58
GINS3-203ENST00000426538 BIVM-ERCC5R4GMW8 1640 aa24.9■■□□□ 1.58
GINS3-203ENST00000426538 FAM9AQ8IZU1 332 aaPredicted RBP24.86■■□□□ 1.57
GINS3-203ENST00000426538 KIF21AQ7Z4S6 1674 aa24.82■■□□□ 1.56
GINS3-203ENST00000426538 DNMBPQ6XZF7 1577 aa24.77■■□□□ 1.56
GINS3-203ENST00000426538 SOGA1O94964 1423 aa24.76■■□□□ 1.55
GINS3-203ENST00000426538 TOPBP1Q92547 1522 aa24.74■■□□□ 1.55
GINS3-203ENST00000426538 EEA1Q15075 1411 aa24.71■■□□□ 1.55
GINS3-203ENST00000426538 ERCC6Q03468 1493 aa24.71■■□□□ 1.55
GINS3-203ENST00000426538 URB2Q14146 1524 aaKnown RBP24.71■■□□□ 1.55
GINS3-203ENST00000426538 FGD5Q6ZNL6 1462 aa24.69■■□□□ 1.54
GINS3-203ENST00000426538 LOC105371045A0A1W2PR82 267 aa24.66■■□□□ 1.54
GINS3-203ENST00000426538 MRC2Q9UBG0 1479 aa24.66■■□□□ 1.54
GINS3-203ENST00000426538 RUSC2Q8N2Y8 1516 aa24.65■■□□□ 1.54
GINS3-203ENST00000426538 CSRNP3Q8WYN3 585 aa24.63■■□□□ 1.53
GINS3-203ENST00000426538 POLA1P09884 1462 aaPredicted RBP24.6■■□□□ 1.53
GINS3-203ENST00000426538 KIF27Q86VH2 1401 aa24.57■■□□□ 1.52
GINS3-203ENST00000426538 RAD54L2Q9Y4B4 1467 aa24.53■■□□□ 1.52
GINS3-203ENST00000426538 EHMT2Q96KQ7 1210 aa24.52■■□□□ 1.52
GINS3-203ENST00000426538 CUX2O14529 1486 aa24.52■■□□□ 1.52
GINS3-203ENST00000426538 WDR62O43379 1518 aa24.51■■□□□ 1.51
GINS3-203ENST00000426538 ABCA10Q8WWZ4 1543 aa24.48■■□□□ 1.51
GINS3-203ENST00000426538 THOC2Q8NI27 1593 aaKnown RBP24.45■■□□□ 1.51
GINS3-203ENST00000426538 TARBP1Q13395 1621 aaKnown RBP24.36■■□□□ 1.49
GINS3-203ENST00000426538 WDR97A6NE52 1622 aa24.35■■□□□ 1.49
GINS3-203ENST00000426538 IGF1RP08069 1367 aa24.35■■□□□ 1.49
GINS3-203ENST00000426538 TDRD9Q8NDG6 1382 aaKnown RBP24.34■■□□□ 1.49
GINS3-203ENST00000426538 GOLGA3Q08378 1498 aa24.34■■□□□ 1.49
GINS3-203ENST00000426538 IFT140Q96RY7 1462 aa24.34■■□□□ 1.49
GINS3-203ENST00000426538 KIF21BO75037 1637 aa24.34■■□□□ 1.49
GINS3-203ENST00000426538 UBTFP17480 764 aaKnown RBP24.34■■□□□ 1.49
GINS3-203ENST00000426538 PRXQ9BXM0 1461 aa24.3■■□□□ 1.48
GINS3-203ENST00000426538 GAPVD1Q14C86 1478 aa24.28■■□□□ 1.48
GINS3-203ENST00000426538 RAPGEF2Q9Y4G8 1499 aa24.25■■□□□ 1.47
GINS3-203ENST00000426538 ABCA5Q8WWZ7 1642 aa24.25■■□□□ 1.47
GINS3-203ENST00000426538 CARMIL1Q5VZK9 1371 aa24.25■■□□□ 1.47
GINS3-203ENST00000426538 TNIKQ9UKE5 1360 aa24.24■■□□□ 1.47
GINS3-203ENST00000426538 ERICH3Q5RHP9 1530 aa24.24■■□□□ 1.47
GINS3-203ENST00000426538 AQRO60306 1485 aaKnown RBP eCLIP24.21■■□□□ 1.47
GINS3-203ENST00000426538 ZNF608Q9ULD9 1512 aaPredicted RBP24.17■■□□□ 1.46
GINS3-203ENST00000426538 CUL7Q14999 1698 aa24.15■■□□□ 1.46
GINS3-203ENST00000426538 GRIN2BQ13224 1484 aa24.13■■□□□ 1.45
GINS3-203ENST00000426538 PBRM1Q86U86 1689 aa24.1■■□□□ 1.45
GINS3-203ENST00000426538 EIF4G3O43432 1585 aaKnown RBP24.08■■□□□ 1.44
GINS3-203ENST00000426538 CEP162Q5TB80 1403 aa24.07■■□□□ 1.44
GINS3-203ENST00000426538 FHAD1B1AJZ9 1412 aa24.02■■□□□ 1.44
GINS3-203ENST00000426538 RANGAP1P46060 587 aaPredicted RBP23.98■■□□□ 1.43
GINS3-203ENST00000426538 SNAPC4Q5SXM2 1469 aa23.96■■□□□ 1.43
GINS3-203ENST00000426538 ADAMTS12P58397 1594 aa23.96■■□□□ 1.43
GINS3-203ENST00000426538 CLIP1P30622 1438 aa23.95■■□□□ 1.43
GINS3-203ENST00000426538 MAGI1Q96QZ7 1491 aaPredicted RBP23.93■■□□□ 1.42
GINS3-203ENST00000426538 CHMP7Q8WUX9 453 aaPredicted RBP23.89■■□□□ 1.41
GINS3-203ENST00000426538 FBLN2P98095 1184 aa23.85■■□□□ 1.41
GINS3-203ENST00000426538 SYNJ2O15056 1496 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms