RNA–Protein interactions for RNA: ENST00000532259.1

SRPRA-206, Transcript of SRP receptor subunit alpha, humanhuman

TSL 2 BASIC

Gene SRPRA, Length 2,453 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRPRA-206ENST00000532259 NISCHQ9Y2I1 1504 aa33.39■■■□□ 2.94
SRPRA-206ENST00000532259 CCDC180Q9P1Z9 1646 aa28.7■■■□□ 2.18
SRPRA-206ENST00000532259 ZCCHC6Q5VYS8 1495 aaKnown RBP28.09■■■□□ 2.09
SRPRA-206ENST00000532259 SHROOM4Q9ULL8 1493 aa27.96■■■□□ 2.07
SRPRA-206ENST00000532259 DCAF8L2P0C7V8 631 aa27.91■■■□□ 2.06
SRPRA-206ENST00000532259 DCAF1Q9Y4B6 1507 aa27.37■■□□□ 1.97
SRPRA-206ENST00000532259 ABCC9O60706 1549 aa27.26■■□□□ 1.95
SRPRA-206ENST00000532259 SUPT5HO00267 1087 aaKnown RBP27.06■■□□□ 1.92
SRPRA-206ENST00000532259 MYO15BQ96JP2 1530 aa26.85■■□□□ 1.89
SRPRA-206ENST00000532259 SCRIBQ14160 1630 aa26.81■■□□□ 1.88
SRPRA-206ENST00000532259 NACADO15069 1562 aa26.71■■□□□ 1.87
SRPRA-206ENST00000532259 RB1CC1Q8TDY2 1594 aa26.43■■□□□ 1.82
SRPRA-206ENST00000532259 RSF1Q96T23 1441 aaPredicted RBP26.15■■□□□ 1.78
SRPRA-206ENST00000532259 CECR2Q9BXF3 1484 aa26.13■■□□□ 1.77
SRPRA-206ENST00000532259 UNC13AQ9UPW8 1703 aa26.05■■□□□ 1.76
SRPRA-206ENST00000532259 CHIC1Q5VXU3 224 aa25.95■■□□□ 1.75
SRPRA-206ENST00000532259 MROH2BQ7Z745 1585 aa25.94■■□□□ 1.74
SRPRA-206ENST00000532259 PABPN1Q86U42 306 aaKnown RBP eCLIP25.93■■□□□ 1.74
SRPRA-206ENST00000532259 BICRAQ9NZM4 1560 aa25.78■■□□□ 1.72
SRPRA-206ENST00000532259 WIZO95785 1651 aa25.76■■□□□ 1.71
SRPRA-206ENST00000532259 BAZ1AQ9NRL2 1556 aaPredicted RBP25.68■■□□□ 1.7
SRPRA-206ENST00000532259 SMARCA4P51532 1647 aa25.57■■□□□ 1.68
SRPRA-206ENST00000532259 TOP2AP11388 1531 aaKnown RBP25.32■■□□□ 1.64
SRPRA-206ENST00000532259 TRIM41Q8WV44 630 aa25.24■■□□□ 1.63
SRPRA-206ENST00000532259 CCDC88BA6NC98 1476 aa25.22■■□□□ 1.63
SRPRA-206ENST00000532259 LOC105371045A0A1W2PR82 267 aa25.19■■□□□ 1.62
SRPRA-206ENST00000532259 SMARCA2P51531 1590 aa25.18■■□□□ 1.62
SRPRA-206ENST00000532259 ATAD2BQ9ULI0 1458 aa25.11■■□□□ 1.61
SRPRA-206ENST00000532259 PEG3Q9GZU2 1588 aa25.11■■□□□ 1.61
SRPRA-206ENST00000532259 EIF4G1Q04637 1599 aaKnown RBP25.08■■□□□ 1.61
SRPRA-206ENST00000532259 FAM9AQ8IZU1 332 aaPredicted RBP25.04■■□□□ 1.6
SRPRA-206ENST00000532259 BAZ1BQ9UIG0 1483 aaKnown RBP24.98■■□□□ 1.59
SRPRA-206ENST00000532259 ABCC8Q09428 1581 aa24.93■■□□□ 1.58
SRPRA-206ENST00000532259 EHMT2Q96KQ7 1210 aa24.92■■□□□ 1.58
SRPRA-206ENST00000532259 NCAPD3P42695 1498 aa24.74■■□□□ 1.55
SRPRA-206ENST00000532259 HMGXB3Q12766 1538 aa24.65■■□□□ 1.54
SRPRA-206ENST00000532259 WRNQ14191 1432 aaPredicted RBP eCLIP24.57■■□□□ 1.52
SRPRA-206ENST00000532259 SOGA1O94964 1423 aa24.55■■□□□ 1.52
SRPRA-206ENST00000532259 CC2D2AQ9P2K1 1620 aa24.53■■□□□ 1.52
SRPRA-206ENST00000532259 SYNJ1O43426 1573 aa24.5■■□□□ 1.51
SRPRA-206ENST00000532259 RUSC2Q8N2Y8 1516 aa24.49■■□□□ 1.51
SRPRA-206ENST00000532259 PCGF6Q9BYE7 350 aa24.45■■□□□ 1.5
SRPRA-206ENST00000532259 CFTRP13569 1480 aa24.34■■□□□ 1.49
SRPRA-206ENST00000532259 DNAJC5BQ9UF47 199 aa24.33■■□□□ 1.49
SRPRA-206ENST00000532259 CSRNP3Q8WYN3 585 aa24.3■■□□□ 1.48
SRPRA-206ENST00000532259 TOP2BQ02880 1626 aa24.23■■□□□ 1.47
SRPRA-206ENST00000532259 CADPSQ9ULU8 1353 aa24.21■■□□□ 1.47
SRPRA-206ENST00000532259 EEA1Q15075 1411 aa24.2■■□□□ 1.47
SRPRA-206ENST00000532259 CUX1P39880 1505 aa24.2■■□□□ 1.46
SRPRA-206ENST00000532259 BIVM-ERCC5R4GMW8 1640 aa24.15■■□□□ 1.46
SRPRA-206ENST00000532259 UBTFP17480 764 aaKnown RBP24.15■■□□□ 1.46
SRPRA-206ENST00000532259 PPARGC1BQ86YN6 1023 aaKnown RBP24.13■■□□□ 1.45
SRPRA-206ENST00000532259 NESP48681 1621 aa24.08■■□□□ 1.45
SRPRA-206ENST00000532259 PRDM2Q13029 1718 aa24.06■■□□□ 1.44
SRPRA-206ENST00000532259 TRIM26Q12899 539 aaPredicted RBP24.06■■□□□ 1.44
SRPRA-206ENST00000532259 CEP162Q5TB80 1403 aa24.06■■□□□ 1.44
SRPRA-206ENST00000532259 TNIKQ9UKE5 1360 aa24.05■■□□□ 1.44
SRPRA-206ENST00000532259 GOLGA3Q08378 1498 aa24.04■■□□□ 1.44
SRPRA-206ENST00000532259 CEP164Q9UPV0 1460 aa23.98■■□□□ 1.43
SRPRA-206ENST00000532259 RAPGEF2Q9Y4G8 1499 aa23.98■■□□□ 1.43
SRPRA-206ENST00000532259 FANCD2Q9BXW9 1451 aa23.98■■□□□ 1.43
SRPRA-206ENST00000532259 KIF21BO75037 1637 aa23.94■■□□□ 1.42
SRPRA-206ENST00000532259 RANGAP1P46060 587 aaPredicted RBP23.93■■□□□ 1.42
SRPRA-206ENST00000532259 TTBK1Q5TCY1 1321 aaPredicted RBP23.91■■□□□ 1.42
SRPRA-206ENST00000532259 HRCP23327 699 aa23.88■■□□□ 1.41
SRPRA-206ENST00000532259 FGD5Q6ZNL6 1462 aa23.87■■□□□ 1.41
SRPRA-206ENST00000532259 KIF27Q86VH2 1401 aa23.86■■□□□ 1.41
SRPRA-206ENST00000532259 CUX2O14529 1486 aa23.81■■□□□ 1.4
SRPRA-206ENST00000532259 PRXQ9BXM0 1461 aa23.81■■□□□ 1.4
SRPRA-206ENST00000532259 LAMC3Q9Y6N6 1575 aa23.77■■□□□ 1.4
SRPRA-206ENST00000532259 CLIP1P30622 1438 aa23.76■■□□□ 1.39
SRPRA-206ENST00000532259 TOPBP1Q92547 1522 aa23.74■■□□□ 1.39
SRPRA-206ENST00000532259 RAD54L2Q9Y4B4 1467 aa23.74■■□□□ 1.39
SRPRA-206ENST00000532259 DNMBPQ6XZF7 1577 aa23.72■■□□□ 1.39
SRPRA-206ENST00000532259 IGF1RP08069 1367 aa23.71■■□□□ 1.39
SRPRA-206ENST00000532259 POLA1P09884 1462 aaPredicted RBP23.69■■□□□ 1.38
SRPRA-206ENST00000532259 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
SRPRA-206ENST00000532259 ERICH3Q5RHP9 1530 aa23.68■■□□□ 1.38
SRPRA-206ENST00000532259 PDS5BQ9NTI5 1447 aa23.65■■□□□ 1.38
SRPRA-206ENST00000532259 KIF21AQ7Z4S6 1674 aa23.63■■□□□ 1.37
SRPRA-206ENST00000532259 CARMIL1Q5VZK9 1371 aa23.58■■□□□ 1.37
SRPRA-206ENST00000532259 ABCA10Q8WWZ4 1543 aa23.56■■□□□ 1.36
SRPRA-206ENST00000532259 VPS8Q8N3P4 1428 aa23.54■■□□□ 1.36
SRPRA-206ENST00000532259 TDRD9Q8NDG6 1382 aaKnown RBP23.51■■□□□ 1.35
SRPRA-206ENST00000532259 ARAP1Q96P48 1450 aa23.49■■□□□ 1.35
SRPRA-206ENST00000532259 ARHGAP35Q9NRY4 1499 aa23.41■■□□□ 1.34
SRPRA-206ENST00000532259 WDR97A6NE52 1622 aa23.4■■□□□ 1.34
SRPRA-206ENST00000532259 APLP2Q06481 763 aa23.4■■□□□ 1.34
SRPRA-206ENST00000532259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.34■■□□□ 1.33
SRPRA-206ENST00000532259 GAPVD1Q14C86 1478 aa23.34■■□□□ 1.33
SRPRA-206ENST00000532259 MRC2Q9UBG0 1479 aa23.34■■□□□ 1.33
SRPRA-206ENST00000532259 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.32
SRPRA-206ENST00000532259 P3H3Q8IVL6 736 aa23.33■■□□□ 1.32
SRPRA-206ENST00000532259 TARBP1Q13395 1621 aaKnown RBP23.32■■□□□ 1.32
SRPRA-206ENST00000532259 KANK4Q5T7N3 995 aaPredicted RBP23.3■■□□□ 1.32
SRPRA-206ENST00000532259 AQRO60306 1485 aaKnown RBP eCLIP23.27■■□□□ 1.329e-7■■■■□ 24
SRPRA-206ENST00000532259 CUL7Q14999 1698 aa23.27■■□□□ 1.31
SRPRA-206ENST00000532259 ERCC6Q03468 1493 aa23.22■■□□□ 1.31
SRPRA-206ENST00000532259 CCER1Q8TC90 406 aaPredicted RBP23.2■■□□□ 1.3
SRPRA-206ENST00000532259 HNRNPUL2Q1KMD3 747 aaKnown RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms