RNA–Protein interactions for RNA: ENST00000309836.9

SPIRE1-201, Transcript of spire type actin nucleation factor 1, humanhuman

TSL 2 BASIC

Gene SPIRE1, Length 1,877 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIRE1-201ENST00000309836 NISCHQ9Y2I1 1504 aa32.11■■■□□ 2.73
SPIRE1-201ENST00000309836 CCDC180Q9P1Z9 1646 aa27.44■■□□□ 1.98
SPIRE1-201ENST00000309836 ZCCHC6Q5VYS8 1495 aaKnown RBP27.17■■□□□ 1.94
SPIRE1-201ENST00000309836 SHROOM4Q9ULL8 1493 aa27.13■■□□□ 1.93
SPIRE1-201ENST00000309836 SUPT5HO00267 1087 aaKnown RBP26.51■■□□□ 1.83
SPIRE1-201ENST00000309836 DCAF1Q9Y4B6 1507 aa26.42■■□□□ 1.82
SPIRE1-201ENST00000309836 DCAF8L2P0C7V8 631 aa26.36■■□□□ 1.81
SPIRE1-201ENST00000309836 CHIC1Q5VXU3 224 aa25.83■■□□□ 1.73
SPIRE1-201ENST00000309836 MYO15BQ96JP2 1530 aa25.78■■□□□ 1.72
SPIRE1-201ENST00000309836 ABCC9O60706 1549 aa25.64■■□□□ 1.7
SPIRE1-201ENST00000309836 SCRIBQ14160 1630 aa25.59■■□□□ 1.69
SPIRE1-201ENST00000309836 RSF1Q96T23 1441 aaPredicted RBP25.34■■□□□ 1.65
SPIRE1-201ENST00000309836 NACADO15069 1562 aa25.33■■□□□ 1.65
SPIRE1-201ENST00000309836 RB1CC1Q8TDY2 1594 aa25.08■■□□□ 1.61
SPIRE1-201ENST00000309836 CECR2Q9BXF3 1484 aa25.01■■□□□ 1.59
SPIRE1-201ENST00000309836 LOC105371045A0A1W2PR82 267 aa25■■□□□ 1.59
SPIRE1-201ENST00000309836 MROH2BQ7Z745 1585 aa24.94■■□□□ 1.58
SPIRE1-201ENST00000309836 HRCP23327 699 aa24.85■■□□□ 1.57
SPIRE1-201ENST00000309836 PCGF6Q9BYE7 350 aa24.82■■□□□ 1.56
SPIRE1-201ENST00000309836 WIZO95785 1651 aa24.8■■□□□ 1.56
SPIRE1-201ENST00000309836 TRIM41Q8WV44 630 aa24.73■■□□□ 1.55
SPIRE1-201ENST00000309836 BAZ1AQ9NRL2 1556 aaPredicted RBP24.69■■□□□ 1.54
SPIRE1-201ENST00000309836 UNC13AQ9UPW8 1703 aa24.6■■□□□ 1.53
SPIRE1-201ENST00000309836 EIF4G1Q04637 1599 aaKnown RBP24.55■■□□□ 1.52
SPIRE1-201ENST00000309836 SMARCA4P51532 1647 aa24.5■■□□□ 1.51
SPIRE1-201ENST00000309836 FAM9AQ8IZU1 332 aaPredicted RBP24.48■■□□□ 1.51
SPIRE1-201ENST00000309836 TOP2AP11388 1531 aaKnown RBP24.46■■□□□ 1.51
SPIRE1-201ENST00000309836 TRIM26Q12899 539 aaPredicted RBP24.45■■□□□ 1.5
SPIRE1-201ENST00000309836 SMARCA2P51531 1590 aa24.32■■□□□ 1.48
SPIRE1-201ENST00000309836 CCDC88BA6NC98 1476 aa24.3■■□□□ 1.48
SPIRE1-201ENST00000309836 PPARGC1BQ86YN6 1023 aaKnown RBP24.3■■□□□ 1.48
SPIRE1-201ENST00000309836 BICRAQ9NZM4 1560 aa24.29■■□□□ 1.48
SPIRE1-201ENST00000309836 EHMT2Q96KQ7 1210 aa24.21■■□□□ 1.47
SPIRE1-201ENST00000309836 ABCC8Q09428 1581 aa24.18■■□□□ 1.46
SPIRE1-201ENST00000309836 PABPN1Q86U42 306 aaKnown RBP eCLIP24.13■■□□□ 1.45
SPIRE1-201ENST00000309836 PEG3Q9GZU2 1588 aa24.07■■□□□ 1.44
SPIRE1-201ENST00000309836 SOGA1O94964 1423 aa23.92■■□□□ 1.42
SPIRE1-201ENST00000309836 ZEB1P37275 1124 aaPredicted RBP23.87■■□□□ 1.41
SPIRE1-201ENST00000309836 ATAD2BQ9ULI0 1458 aa23.86■■□□□ 1.41
SPIRE1-201ENST00000309836 EEA1Q15075 1411 aa23.83■■□□□ 1.4
SPIRE1-201ENST00000309836 RUSC2Q8N2Y8 1516 aa23.82■■□□□ 1.4
SPIRE1-201ENST00000309836 WRNQ14191 1432 aaPredicted RBP eCLIP23.78■■□□□ 1.4
SPIRE1-201ENST00000309836 CEP162Q5TB80 1403 aa23.77■■□□□ 1.4
SPIRE1-201ENST00000309836 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
SPIRE1-201ENST00000309836 TNIKQ9UKE5 1360 aa23.76■■□□□ 1.39
SPIRE1-201ENST00000309836 SYNJ1O43426 1573 aa23.73■■□□□ 1.39
SPIRE1-201ENST00000309836 CSRNP3Q8WYN3 585 aa23.73■■□□□ 1.39
SPIRE1-201ENST00000309836 GOLGA3Q08378 1498 aa23.65■■□□□ 1.38
SPIRE1-201ENST00000309836 KIF21BO75037 1637 aa23.56■■□□□ 1.36
SPIRE1-201ENST00000309836 UBTFP17480 764 aaKnown RBP23.55■■□□□ 1.36
SPIRE1-201ENST00000309836 CEP164Q9UPV0 1460 aa23.52■■□□□ 1.36
SPIRE1-201ENST00000309836 TOP2BQ02880 1626 aa23.45■■□□□ 1.35
SPIRE1-201ENST00000309836 HMGXB3Q12766 1538 aa23.45■■□□□ 1.34
SPIRE1-201ENST00000309836 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.45■■□□□ 1.34
SPIRE1-201ENST00000309836 TTBK1Q5TCY1 1321 aaPredicted RBP23.43■■□□□ 1.34
SPIRE1-201ENST00000309836 NCAPD3P42695 1498 aa23.42■■□□□ 1.34
SPIRE1-201ENST00000309836 BIVM-ERCC5R4GMW8 1640 aa23.42■■□□□ 1.34
SPIRE1-201ENST00000309836 CCER1Q8TC90 406 aaPredicted RBP23.36■■□□□ 1.33
SPIRE1-201ENST00000309836 RAPGEF2Q9Y4G8 1499 aa23.35■■□□□ 1.33
SPIRE1-201ENST00000309836 CLIP1P30622 1438 aa23.34■■□□□ 1.33
SPIRE1-201ENST00000309836 VPS8Q8N3P4 1428 aa23.25■■□□□ 1.31
SPIRE1-201ENST00000309836 CUX1P39880 1505 aa23.25■■□□□ 1.31
SPIRE1-201ENST00000309836 CFTRP13569 1480 aa23.19■■□□□ 1.3
SPIRE1-201ENST00000309836 ERICH3Q5RHP9 1530 aa23.18■■□□□ 1.3
SPIRE1-201ENST00000309836 PRXQ9BXM0 1461 aa23.18■■□□□ 1.3
SPIRE1-201ENST00000309836 PRDM2Q13029 1718 aa23.1■■□□□ 1.29
SPIRE1-201ENST00000309836 ARAP1Q96P48 1450 aa23.05■■□□□ 1.28
SPIRE1-201ENST00000309836 KIF27Q86VH2 1401 aa23.05■■□□□ 1.28
SPIRE1-201ENST00000309836 RANGAP1P46060 587 aaPredicted RBP23.05■■□□□ 1.28
SPIRE1-201ENST00000309836 APLP2Q06481 763 aa22.98■■□□□ 1.27
SPIRE1-201ENST00000309836 HNRNPUL2Q1KMD3 747 aaKnown RBP22.98■■□□□ 1.27
SPIRE1-201ENST00000309836 CADPSQ9ULU8 1353 aa22.92■■□□□ 1.26
SPIRE1-201ENST00000309836 CC2D2AQ9P2K1 1620 aa22.87■■□□□ 1.25
SPIRE1-201ENST00000309836 DIEXFQ68CQ4 756 aaKnown RBP22.86■■□□□ 1.25
SPIRE1-201ENST00000309836 CUX2O14529 1486 aa22.85■■□□□ 1.25
SPIRE1-201ENST00000309836 ARHGAP35Q9NRY4 1499 aa22.84■■□□□ 1.25
SPIRE1-201ENST00000309836 FGD5Q6ZNL6 1462 aa22.82■■□□□ 1.24
SPIRE1-201ENST00000309836 IGF1RP08069 1367 aa22.81■■□□□ 1.24
SPIRE1-201ENST00000309836 SCAF1Q9H7N4 1312 aaKnown RBP22.8■■□□□ 1.24
SPIRE1-201ENST00000309836 KANK4Q5T7N3 995 aaPredicted RBP22.8■■□□□ 1.24
SPIRE1-201ENST00000309836 ZNF316A6NFI3 1004 aaPredicted RBP22.77■■□□□ 1.24
SPIRE1-201ENST00000309836 FANCD2Q9BXW9 1451 aa22.71■■□□□ 1.23
SPIRE1-201ENST00000309836 RRBP1Q9P2E9 1410 aaKnown RBP22.71■■□□□ 1.23
SPIRE1-201ENST00000309836 CARMIL1Q5VZK9 1371 aa22.7■■□□□ 1.22
SPIRE1-201ENST00000309836 DNMBPQ6XZF7 1577 aa22.65■■□□□ 1.22
SPIRE1-201ENST00000309836 ACIN1Q9UKV3 1341 aaKnown RBP22.63■■□□□ 1.21
SPIRE1-201ENST00000309836 DHX57Q6P158 1386 aaKnown RBP22.62■■□□□ 1.21
SPIRE1-201ENST00000309836 TIAM1Q13009 1591 aa22.6■■□□□ 1.21
SPIRE1-201ENST00000309836 NEUROD1Q13562 356 aa22.6■■□□□ 1.21
SPIRE1-201ENST00000309836 MAP3K1Q13233 1512 aa22.59■■□□□ 1.21
SPIRE1-201ENST00000309836 TOPBP1Q92547 1522 aa22.59■■□□□ 1.21
SPIRE1-201ENST00000309836 ABCA10Q8WWZ4 1543 aa22.58■■□□□ 1.2
SPIRE1-201ENST00000309836 NESP48681 1621 aa22.57■■□□□ 1.2
SPIRE1-201ENST00000309836 CCNB3Q8WWL7 1395 aa22.57■■□□□ 1.2
SPIRE1-201ENST00000309836 RAD54L2Q9Y4B4 1467 aa22.57■■□□□ 1.2
SPIRE1-201ENST00000309836 CLSPNQ9HAW4 1339 aa22.57■■□□□ 1.2
SPIRE1-201ENST00000309836 POLA1P09884 1462 aaPredicted RBP22.55■■□□□ 1.2
SPIRE1-201ENST00000309836 CFAP43Q8NDM7 1665 aa22.49■■□□□ 1.19
SPIRE1-201ENST00000309836 CENPBP07199 599 aaPredicted RBP22.48■■□□□ 1.19
SPIRE1-201ENST00000309836 LRRC9Q6ZRR7 1453 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms