Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 CEP350-202ENST00000367607 13491 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.592e-6■■■■■ 90.5
SF3B1O75533 OFD1-209ENST00000490265 4259 ntTSL 210.16□□□□□ -0.785e-6■■■■■ 90.5
SF3B1O75533 BRCA1-207ENST00000461798 582 ntTSL 310.07□□□□□ -0.82e-9■■■■■ 90.5
SF3B1O75533 TXNL1-204ENST00000586262 3541 ntTSL 1 (best)7.15□□□□□ -1.267e-7■■■■■ 90.5
SF3B1O75533 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.11□□□□□ -1.437e-6■■■■■ 90.5
SF3B1O75533 ST7-OT4-205ENST00000471110 591 ntTSL 44.56□□□□□ -1.683e-6■■■■■ 90.5
SF3B1O75533 LRRC8B-204ENST00000449440 763 ntTSL 326.62■■□□□ 1.856e-6■■■■■ 90.4
SF3B1O75533 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.17■□□□□ 0.986e-6■■■■■ 90.4
SF3B1O75533 YPEL3-205ENST00000565110 575 ntTSL 521.1■□□□□ 0.976e-6■■■■■ 90.4
SF3B1O75533 YPEL3-206ENST00000565479 865 ntTSL 520.8■□□□□ 0.926e-6■■■■■ 90.4
SF3B1O75533 YPEL3-210ENST00000568674 371 ntTSL 220.53■□□□□ 0.886e-6■■■■■ 90.4
SF3B1O75533 CTDSP1-207ENST00000473420 922 ntTSL 320.52■□□□□ 0.873e-6■■■■■ 90.4
SF3B1O75533 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.856e-6■■■■■ 90.4
SF3B1O75533 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.18■□□□□ 0.826e-6■■■■■ 90.4
SF3B1O75533 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.776e-6■■■■■ 90.4
SF3B1O75533 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.666e-6■■■■■ 90.4
SF3B1O75533 CTDSP1-215ENST00000498160 877 ntTSL 518.9■□□□□ 0.623e-6■■■■■ 90.4
SF3B1O75533 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.02■□□□□ 0.483e-6■■■■■ 90.4
SF3B1O75533 CTDSP1-214ENST00000497677 998 ntTSL 217.4■□□□□ 0.383e-6■■■■■ 90.4
SF3B1O75533 CTDSP1-202ENST00000428361 842 ntTSL 517.07■□□□□ 0.323e-6■■■■■ 90.4
SF3B1O75533 CTDSP1-205ENST00000452977 818 ntTSL 517.07■□□□□ 0.323e-6■■■■■ 90.4
SF3B1O75533 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.23e-6■■■■■ 90.4
SF3B1O75533 RTFDC1-204ENST00000449062 852 ntTSL 515.37■□□□□ 0.056e-6■■■■■ 90.4
SF3B1O75533 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.036e-6■■■■■ 90.4
SF3B1O75533 CTDSP1-210ENST00000491064 786 ntTSL 315.17■□□□□ 0.023e-6■■■■■ 90.4
SF3B1O75533 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.96□□□□□ -0.026e-6■■■■■ 90.4
SF3B1O75533 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.86□□□□□ -0.036e-6■■■■■ 90.4
SF3B1O75533 CTDSP1-212ENST00000494067 362 ntTSL 314.75□□□□□ -0.053e-6■■■■■ 90.4
SF3B1O75533 RTFDC1-202ENST00000357348 2212 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.336e-6■■■■■ 90.4
SF3B1O75533 RIPOR1-202ENST00000379312 4116 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.376e-6■■■■■ 90.4
SF3B1O75533 RIPOR1-205ENST00000540839 4260 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.436e-6■■■■■ 90.4
SF3B1O75533 RIPOR1-201ENST00000042381 4051 ntAPPRIS P3 TSL 5 BASIC11.71□□□□□ -0.536e-6■■■■■ 90.4
SF3B1O75533 RIPOR1-203ENST00000422602 3990 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.646e-6■■■■■ 90.4
SF3B1O75533 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC7.53□□□□□ -1.26e-6■■■■■ 90.4
SF3B1O75533 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.39□□□□□ -1.396e-6■■■■■ 90.4
SF3B1O75533 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.436e-6■■■■■ 90.4
SF3B1O75533 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.98□□□□□ -1.456e-6■■■■■ 90.4
SF3B1O75533 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.646e-6■■■■■ 90.4
SF3B1O75533 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.66□□□□□ -1.666e-6■■■■■ 90.4
SF3B1O75533 APOO-202ENST00000439528 714 ntTSL 23.69□□□□□ -1.826e-6■■■■■ 90.4
SF3B1O75533 NELFA-205ENST00000416258 2188 ntTSL 519.43■□□□□ 0.72e-7■■■■■ 90.4
SF3B1O75533 NELFA-201ENST00000333877 2228 ntTSL 219.18■□□□□ 0.662e-7■■■■■ 90.4
SF3B1O75533 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.62■□□□□ 0.412e-7■■■■■ 90.4
SF3B1O75533 NELFA-212ENST00000463820 2495 ntTSL 217.29■□□□□ 0.362e-7■■■■■ 90.4
SF3B1O75533 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.252e-7■■■■■ 90.4
SF3B1O75533 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.26■□□□□ 0.032e-7■■■■■ 90.4
SF3B1O75533 TIMELESS-203ENST00000553532 5121 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.624e-6■■■■■ 90.4
SF3B1O75533 TIMELESS-201ENST00000229201 4376 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.754e-6■■■■■ 90.4
SF3B1O75533 TRRAP-205ENST00000456197 11654 ntAPPRIS ALT2 TSL 1 (best)8.08□□□□□ -1.125e-6■■■■■ 90.4
SF3B1O75533 SMCHD1-203ENST00000577880 4951 ntTSL 23.09□□□□□ -1.912e-7■■■■■ 90.4
SF3B1O75533 SMCHD1-211ENST00000584897 4143 ntTSL 21.89□□□□□ -2.112e-7■■■■■ 90.4
SF3B1O75533 TFR2-204ENST00000462090 1844 ntTSL 519.3■□□□□ 0.684e-7■■■■■ 90.4
SF3B1O75533 TFR2-213ENST00000490084 2196 ntTSL 217.67■□□□□ 0.424e-7■■■■■ 90.4
SF3B1O75533 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.99■□□□□ 0.475e-6■■■■■ 90.4
SF3B1O75533 AHI1-206ENST00000475846 2920 ntTSL 26.61□□□□□ -1.356e-6■■■■■ 90.4
SF3B1O75533 AHI1-203ENST00000367799 2340 ntAPPRIS ALT2 TSL 1 (best)2.9□□□□□ -1.946e-6■■■■■ 90.4
SF3B1O75533 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.92e-6■■■■■ 90.3
SF3B1O75533 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.96■□□□□ 0.792e-6■■■■■ 90.3
SF3B1O75533 NDUFA10-207ENST00000443626 776 ntTSL 514.24□□□□□ -0.132e-6■■■■■ 90.3
SF3B1O75533 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.182e-6■■■■■ 90.3
SF3B1O75533 NDUFA10-212ENST00000485344 4509 ntTSL 212.13□□□□□ -0.472e-6■■■■■ 90.3
SF3B1O75533 XYLB-201ENST00000207870 3664 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.724e-6■■■■■ 90.3
SF3B1O75533 XYLB-202ENST00000424034 3484 ntTSL 29.63□□□□□ -0.874e-6■■■■■ 90.3
SF3B1O75533 TNPO3-205ENST00000627585 4514 ntTSL 2 BASIC9.43□□□□□ -0.93e-6■■■■■ 90.3
SF3B1O75533 TNPO3-203ENST00000471234 3283 ntTSL 1 (best) BASIC9.34□□□□□ -0.913e-6■■■■■ 90.3
SF3B1O75533 TNPO3-201ENST00000265388 4153 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.053e-6■■■■■ 90.3
SF3B1O75533 TNPO3-202ENST00000471166 3019 ntTSL 5 BASIC8.47□□□□□ -1.053e-6■■■■■ 90.3
SF3B1O75533 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC8.3□□□□□ -1.083e-6■■■■■ 90.3
SF3B1O75533 ANKRD11-207ENST00000562816 573 ntTSL 412.63□□□□□ -0.391e-6■■■■■ 90.3
SF3B1O75533 ARMC8-221ENST00000491704 2777 ntTSL 5 BASIC12.58□□□□□ -0.44e-6■■■■■ 90.2
SF3B1O75533 ARMC8-204ENST00000461822 2221 ntTSL 2 BASIC12.48□□□□□ -0.414e-6■■■■■ 90.2
SF3B1O75533 ARMC8-217ENST00000481646 3043 ntTSL 1 (best) BASIC11.15□□□□□ -0.634e-6■■■■■ 90.2
SF3B1O75533 ARMC8-223ENST00000538260 4728 ntTSL 2 BASIC10.93□□□□□ -0.664e-6■■■■■ 90.2
SF3B1O75533 ARMC8-218ENST00000485396 1920 ntTSL 2 BASIC9.86□□□□□ -0.834e-6■■■■■ 90.2
SF3B1O75533 ARMC8-210ENST00000469044 4790 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.044e-6■■■■■ 90.2
SF3B1O75533 AC138409.2-202ENST00000507274 458 ntBASIC5.76□□□□□ -1.492e-6■■■■■ 90.2
SF3B1O75533 CPNE1-207ENST00000414664 1070 ntTSL 527.55■■■□□ 23e-7■■■■■ 90.2
SF3B1O75533 CPNE1-217ENST00000439669 784 ntTSL 526.26■■□□□ 1.793e-7■■■■■ 90.2
SF3B1O75533 CPNE1-220ENST00000458038 596 ntTSL 323.83■■□□□ 1.43e-7■■■■■ 90.2
SF3B1O75533 CPNE1-211ENST00000420363 821 ntTSL 223.33■■□□□ 1.323e-7■■■■■ 90.2
SF3B1O75533 CPNE1-219ENST00000440240 746 ntTSL 522.91■■□□□ 1.263e-7■■■■■ 90.2
SF3B1O75533 CPNE1-210ENST00000416778 744 ntTSL 219.61■□□□□ 0.733e-7■■■■■ 90.2
SF3B1O75533 CPNE1-213ENST00000434795 831 ntTSL 319.61■□□□□ 0.733e-7■■■■■ 90.2
SF3B1O75533 CPNE1-206ENST00000412056 998 ntTSL 315.1■□□□□ 0.013e-7■■■■■ 90.2
SF3B1O75533 CPNE1-218ENST00000439806 748 ntTSL 510.78□□□□□ -0.683e-7■■■■■ 90.2
SF3B1O75533 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.032e-6■■■■■ 90.2
SF3B1O75533 RNF40-203ENST00000493683 5371 ntTSL 220.57■□□□□ 0.882e-6■■■■■ 90.2
SF3B1O75533 UBE2G1-201ENST00000396981 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.384e-6■■■■■ 90.2
SF3B1O75533 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.14■□□□□ 0.656e-6■■■■■ 90.2
SF3B1O75533 SEH1L-201ENST00000262124 3494 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.436e-6■■■■■ 90.2
SF3B1O75533 SEH1L-208ENST00000590843 5206 ntTSL 1 (best)12.22□□□□□ -0.456e-6■■■■■ 90.2
SF3B1O75533 TNK2-212ENST00000439230 2331 ntTSL 1 (best)18.85■□□□□ 0.612e-6■■■■■ 90.1
SF3B1O75533 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.094e-6■■■■■ 90.1
SF3B1O75533 STARD8-205ENST00000523864 4864 ntTSL 1 (best)14.49□□□□□ -0.094e-6■■■■■ 90.1
SF3B1O75533 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.32□□□□□ -0.122e-6■■■■■ 90.1
SF3B1O75533 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.254e-6■■■■■ 90.1
SF3B1O75533 ESCO1-202ENST00000383276 4773 ntTSL 212.12□□□□□ -0.476e-6■■■■■ 90.1
SF3B1O75533 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.756e-6■■■■■ 90.1
SF3B1O75533 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.94■□□□□ 0.622e-6■■■■■ 90.1
SF3B1O75533 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.42□□□□□ -0.14e-6■■■■■ 90.1
Retrieved 100 of 46,956 protein–RNA pairs in 1480.7 ms