RNA–Protein interactions for RNA: ENST00000461798.5

BRCA1-207, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-207ENST00000461798 AEBP2Q6ZN18 517 aaPredicted RBP24.2■■□□□ 1.46
BRCA1-207ENST00000461798 NISCHQ9Y2I1 1504 aa22.72■■□□□ 1.23
BRCA1-207ENST00000461798 CHIC1Q5VXU3 224 aa22.52■■□□□ 1.2
BRCA1-207ENST00000461798 SENP3Q9H4L4 574 aaPredicted RBP20.68■□□□□ 0.9
BRCA1-207ENST00000461798 PHF23Q9BUL5 403 aaPredicted RBP20.32■□□□□ 0.84
BRCA1-207ENST00000461798 CCDC180Q9P1Z9 1646 aa20.26■□□□□ 0.83
BRCA1-207ENST00000461798 ABCC9O60706 1549 aa20.12■□□□□ 0.81
BRCA1-207ENST00000461798 FOXD1Q16676 465 aa19.41■□□□□ 0.7
BRCA1-207ENST00000461798 POTEDQ86YR6 584 aa19.27■□□□□ 0.68
BRCA1-207ENST00000461798 RB1CC1Q8TDY2 1594 aa19.23■□□□□ 0.67
BRCA1-207ENST00000461798 NACADO15069 1562 aa19.18■□□□□ 0.66
BRCA1-207ENST00000461798 DCAF8L2P0C7V8 631 aa19.09■□□□□ 0.65
BRCA1-207ENST00000461798 MYO15BQ96JP2 1530 aa19.02■□□□□ 0.64
BRCA1-207ENST00000461798 ZCCHC6Q5VYS8 1495 aaKnown RBP18.84■□□□□ 0.61
BRCA1-207ENST00000461798 DNAJC5BQ9UF47 199 aa18.83■□□□□ 0.6
BRCA1-207ENST00000461798 DCAF1Q9Y4B6 1507 aa18.82■□□□□ 0.6
BRCA1-207ENST00000461798 PABPN1Q86U42 306 aaKnown RBP eCLIP18.8■□□□□ 0.6
BRCA1-207ENST00000461798 UNC13AQ9UPW8 1703 aa18.69■□□□□ 0.58
BRCA1-207ENST00000461798 BICRAQ9NZM4 1560 aa18.68■□□□□ 0.58
BRCA1-207ENST00000461798 SHROOM4Q9ULL8 1493 aa18.5■□□□□ 0.55
BRCA1-207ENST00000461798 SCRIBQ14160 1630 aa18.42■□□□□ 0.54
BRCA1-207ENST00000461798 MSH5O43196 834 aa18.4■□□□□ 0.54
BRCA1-207ENST00000461798 EIF4G1Q04637 1599 aaKnown RBP18.19■□□□□ 0.5
BRCA1-207ENST00000461798 CC2D2AQ9P2K1 1620 aa18.17■□□□□ 0.5
BRCA1-207ENST00000461798 CECR2Q9BXF3 1484 aa18.14■□□□□ 0.5
BRCA1-207ENST00000461798 PIAS4Q8N2W9 510 aaPredicted RBP17.93■□□□□ 0.46
BRCA1-207ENST00000461798 NCAPD3P42695 1498 aa17.75■□□□□ 0.43
BRCA1-207ENST00000461798 ATAD2BQ9ULI0 1458 aa17.68■□□□□ 0.42
BRCA1-207ENST00000461798 SMARCA4P51532 1647 aa17.64■□□□□ 0.41
BRCA1-207ENST00000461798 SMARCA2P51531 1590 aa17.62■□□□□ 0.41
BRCA1-207ENST00000461798 BAZ1AQ9NRL2 1556 aaPredicted RBP17.61■□□□□ 0.41
BRCA1-207ENST00000461798 PPP6R1Q9UPN7 881 aa17.59■□□□□ 0.41
BRCA1-207ENST00000461798 HMGXB3Q12766 1538 aa17.57■□□□□ 0.4
BRCA1-207ENST00000461798 PEG3Q9GZU2 1588 aa17.53■□□□□ 0.4
BRCA1-207ENST00000461798 MROH2BQ7Z745 1585 aa17.49■□□□□ 0.39
BRCA1-207ENST00000461798 BAZ1BQ9UIG0 1483 aaKnown RBP17.48■□□□□ 0.39
BRCA1-207ENST00000461798 ADRA2BP18089 450 aa17.47■□□□□ 0.39
BRCA1-207ENST00000461798 PLPPR3Q6T4P5 718 aa17.38■□□□□ 0.37
BRCA1-207ENST00000461798 ERCC6Q03468 1493 aa17.36■□□□□ 0.37
BRCA1-207ENST00000461798 NESP48681 1621 aa17.33■□□□□ 0.37
BRCA1-207ENST00000461798 CUX2O14529 1486 aa17.32■□□□□ 0.36
BRCA1-207ENST00000461798 LAMC3Q9Y6N6 1575 aa17.25■□□□□ 0.35
BRCA1-207ENST00000461798 WIZO95785 1651 aa17.23■□□□□ 0.35
BRCA1-207ENST00000461798 RSF1Q96T23 1441 aaPredicted RBP17.22■□□□□ 0.35
BRCA1-207ENST00000461798 CADPSQ9ULU8 1353 aa17.21■□□□□ 0.35
BRCA1-207ENST00000461798 DNAJC5Q9H3Z4 198 aa17.21■□□□□ 0.35
BRCA1-207ENST00000461798 PDS5BQ9NTI5 1447 aa17.2■□□□□ 0.34
BRCA1-207ENST00000461798 THOC2Q8NI27 1593 aaKnown RBP17.1■□□□□ 0.33
BRCA1-207ENST00000461798 TOP2AP11388 1531 aaKnown RBP17.06■□□□□ 0.32
BRCA1-207ENST00000461798 CFTRP13569 1480 aa17.04■□□□□ 0.32
BRCA1-207ENST00000461798 KIF21AQ7Z4S6 1674 aa17.04■□□□□ 0.32
BRCA1-207ENST00000461798 MRC2Q9UBG0 1479 aa17■□□□□ 0.31
BRCA1-207ENST00000461798 FANCD2Q9BXW9 1451 aa16.96■□□□□ 0.31
BRCA1-207ENST00000461798 CEP164Q9UPV0 1460 aa16.95■□□□□ 0.3
BRCA1-207ENST00000461798 WDR62O43379 1518 aa16.95■□□□□ 0.3
BRCA1-207ENST00000461798 CCDC88BA6NC98 1476 aa16.9■□□□□ 0.3
BRCA1-207ENST00000461798 URB2Q14146 1524 aaKnown RBP16.8■□□□□ 0.28
BRCA1-207ENST00000461798 PRDM2Q13029 1718 aa16.71■□□□□ 0.27
BRCA1-207ENST00000461798 ABCC8Q09428 1581 aa16.68■□□□□ 0.26
BRCA1-207ENST00000461798 TOPBP1Q92547 1522 aa16.65■□□□□ 0.26
BRCA1-207ENST00000461798 IFT140Q96RY7 1462 aa16.64■□□□□ 0.25
BRCA1-207ENST00000461798 OSCARQ8IYS5 282 aa16.61■□□□□ 0.25
BRCA1-207ENST00000461798 DNMBPQ6XZF7 1577 aa16.59■□□□□ 0.25
BRCA1-207ENST00000461798 ZNF608Q9ULD9 1512 aaPredicted RBP16.56■□□□□ 0.24
BRCA1-207ENST00000461798 SUPT5HO00267 1087 aaKnown RBP16.53■□□□□ 0.24
BRCA1-207ENST00000461798 POLA1P09884 1462 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-207ENST00000461798 TARBP1Q13395 1621 aaKnown RBP16.48■□□□□ 0.23
BRCA1-207ENST00000461798 SOGA1O94964 1423 aa16.45■□□□□ 0.22
BRCA1-207ENST00000461798 AQRO60306 1485 aaKnown RBP eCLIP16.45■□□□□ 0.22
BRCA1-207ENST00000461798 EIF4G3O43432 1585 aaKnown RBP16.43■□□□□ 0.22
BRCA1-207ENST00000461798 RAD54L2Q9Y4B4 1467 aa16.42■□□□□ 0.22
BRCA1-207ENST00000461798 CUX1P39880 1505 aa16.41■□□□□ 0.22
BRCA1-207ENST00000461798 TRIM41Q8WV44 630 aa16.41■□□□□ 0.22
BRCA1-207ENST00000461798 FGD5Q6ZNL6 1462 aa16.4■□□□□ 0.22
BRCA1-207ENST00000461798 TDRD9Q8NDG6 1382 aaKnown RBP16.38■□□□□ 0.21
BRCA1-207ENST00000461798 WDR97A6NE52 1622 aa16.34■□□□□ 0.21
BRCA1-207ENST00000461798 DMRT2Q9Y5R5 561 aa16.31■□□□□ 0.2
BRCA1-207ENST00000461798 FBLN2P98095 1184 aa16.3■□□□□ 0.2
BRCA1-207ENST00000461798 GRIN2BQ13224 1484 aa16.29■□□□□ 0.2
BRCA1-207ENST00000461798 MAPK8IP2Q13387 824 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-207ENST00000461798 ARHGEF11O15085 1522 aa16.26■□□□□ 0.19
BRCA1-207ENST00000461798 SNAPC4Q5SXM2 1469 aa16.26■□□□□ 0.19
BRCA1-207ENST00000461798 MAGI1Q96QZ7 1491 aaPredicted RBP16.26■□□□□ 0.19
BRCA1-207ENST00000461798 RIMBP3CA6NJZ7 1639 aa16.26■□□□□ 0.19
BRCA1-207ENST00000461798 RIMBP3BA6NNM3 1639 aa16.26■□□□□ 0.19
BRCA1-207ENST00000461798 RIMBP3Q9UFD9 1639 aa16.26■□□□□ 0.19
BRCA1-207ENST00000461798 ABCA10Q8WWZ4 1543 aa16.25■□□□□ 0.19
BRCA1-207ENST00000461798 CHMP7Q8WUX9 453 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-207ENST00000461798 CHD1O14646 1710 aa16.24■□□□□ 0.19
BRCA1-207ENST00000461798 GAPVD1Q14C86 1478 aa16.23■□□□□ 0.19
BRCA1-207ENST00000461798 WRNQ14191 1432 aaPredicted RBP eCLIP16.23■□□□□ 0.19
BRCA1-207ENST00000461798 CACNB1Q02641 598 aaPredicted RBP16.23■□□□□ 0.19
BRCA1-207ENST00000461798 SYNJ2O15056 1496 aa16.21■□□□□ 0.19
BRCA1-207ENST00000461798 CYB5RLQ6IPT4 315 aa16.18■□□□□ 0.18
BRCA1-207ENST00000461798 TOP2BQ02880 1626 aa16.18■□□□□ 0.18
BRCA1-207ENST00000461798 ABCA5Q8WWZ7 1642 aa16.16■□□□□ 0.18
BRCA1-207ENST00000461798 BIVM-ERCC5R4GMW8 1640 aa16.16■□□□□ 0.18
BRCA1-207ENST00000461798 CLASP1Q7Z460 1538 aa16.14■□□□□ 0.18
BRCA1-207ENST00000461798 SYNJ1O43426 1573 aa16.14■□□□□ 0.17
BRCA1-207ENST00000461798 ARAP1Q96P48 1450 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms