RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 DNAJC5Q9H3Z4 198 aa5.82□□□□□ -1.48
SMCHD1-203ENST00000577880 DCAF8L2P0C7V8 631 aa5.4□□□□□ -1.54
SMCHD1-203ENST00000577880 CUX2O14529 1486 aa5.15□□□□□ -1.59
SMCHD1-203ENST00000577880 AEBP2Q6ZN18 517 aaPredicted RBP5.05□□□□□ -1.6
SMCHD1-203ENST00000577880 DNAJC5BQ9UF47 199 aa5.05□□□□□ -1.6
SMCHD1-203ENST00000577880 FAM9AQ8IZU1 332 aaPredicted RBP4.96□□□□□ -1.61
SMCHD1-203ENST00000577880 SHROOM4Q9ULL8 1493 aa4.94□□□□□ -1.62
SMCHD1-203ENST00000577880 ILDR1Q86SU0 546 aaPredicted RBP4.93□□□□□ -1.62
SMCHD1-203ENST00000577880 SOCS7O14512 581 aa4.89□□□□□ -1.63
SMCHD1-203ENST00000577880 NISCHQ9Y2I1 1504 aa4.88□□□□□ -1.63
SMCHD1-203ENST00000577880 ERCC6L2Q5T890 1561 aa4.86□□□□□ -1.63
SMCHD1-203ENST00000577880 SUPT5HO00267 1087 aaKnown RBP4.77□□□□□ -1.65
SMCHD1-203ENST00000577880 LMTK3Q96Q04 1460 aa4.76□□□□□ -1.65
SMCHD1-203ENST00000577880 ABCC9O60706 1549 aa4.76□□□□□ -1.65
SMCHD1-203ENST00000577880 APLP2Q06481 763 aa4.73□□□□□ -1.65
SMCHD1-203ENST00000577880 FBXO41Q8TF61 875 aa4.72□□□□□ -1.65
SMCHD1-203ENST00000577880 TRIM41Q8WV44 630 aa4.72□□□□□ -1.65
SMCHD1-203ENST00000577880 RB1CC1Q8TDY2 1594 aa4.71□□□□□ -1.66
SMCHD1-203ENST00000577880 CCDC180Q9P1Z9 1646 aa4.66□□□□□ -1.66
SMCHD1-203ENST00000577880 EHMT2Q96KQ7 1210 aa4.65□□□□□ -1.67
SMCHD1-203ENST00000577880 MYT1LQ9UL68 1186 aa4.64□□□□□ -1.67
SMCHD1-203ENST00000577880 CECR2Q9BXF3 1484 aa4.63□□□□□ -1.67
SMCHD1-203ENST00000577880 ATP1B4Q9UN42 357 aaPredicted RBP4.63□□□□□ -1.67
SMCHD1-203ENST00000577880 PABPN1Q86U42 306 aaKnown RBP eCLIP4.6□□□□□ -1.67
SMCHD1-203ENST00000577880 PCDH10Q9P2E7 1040 aa4.59□□□□□ -1.67
SMCHD1-203ENST00000577880 RANGAP1P46060 587 aaPredicted RBP4.57□□□□□ -1.68
SMCHD1-203ENST00000577880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.56□□□□□ -1.68
SMCHD1-203ENST00000577880 HNRNPUL2Q1KMD3 747 aaKnown RBP4.56□□□□□ -1.68
SMCHD1-203ENST00000577880 TTBK1Q5TCY1 1321 aaPredicted RBP4.55□□□□□ -1.68
SMCHD1-203ENST00000577880 NACADO15069 1562 aa4.52□□□□□ -1.69
SMCHD1-203ENST00000577880 SPATA31D1Q6ZQQ2 1576 aa4.52□□□□□ -1.69
SMCHD1-203ENST00000577880 CC2D2AQ9P2K1 1620 aa4.52□□□□□ -1.69
SMCHD1-203ENST00000577880 UBTFP17480 764 aaKnown RBP4.49□□□□□ -1.69
SMCHD1-203ENST00000577880 FBLN2P98095 1184 aa4.46□□□□□ -1.7
SMCHD1-203ENST00000577880 CHIC1Q5VXU3 224 aa4.46□□□□□ -1.7
SMCHD1-203ENST00000577880 RIMBP3CA6NJZ7 1639 aa4.44□□□□□ -1.7
SMCHD1-203ENST00000577880 RIMBP3BA6NNM3 1639 aa4.44□□□□□ -1.7
SMCHD1-203ENST00000577880 BICRAQ9NZM4 1560 aa4.44□□□□□ -1.7
SMCHD1-203ENST00000577880 RIMBP3Q9UFD9 1639 aa4.44□□□□□ -1.7
SMCHD1-203ENST00000577880 NPM1P06748 294 aaKnown RBP eCLIP4.42□□□□□ -1.7
SMCHD1-203ENST00000577880 IFFO2Q5TF58 517 aa4.42□□□□□ -1.7
SMCHD1-203ENST00000577880 ESF1Q9H501 851 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-203ENST00000577880 KDM6BO15054 1643 aa4.41□□□□□ -1.7
SMCHD1-203ENST00000577880 BAZ1AQ9NRL2 1556 aaPredicted RBP4.41□□□□□ -1.7
SMCHD1-203ENST00000577880 ERCC6Q03468 1493 aa4.4□□□□□ -1.7
SMCHD1-203ENST00000577880 MYO15BQ96JP2 1530 aa4.4□□□□□ -1.7
SMCHD1-203ENST00000577880 DISP3Q9P2K9 1392 aa4.38□□□□□ -1.71
SMCHD1-203ENST00000577880 PELP1Q8IZL8 1130 aaKnown RBP4.38□□□□□ -1.71
SMCHD1-203ENST00000577880 BCANQ96GW7 911 aa4.37□□□□□ -1.71
SMCHD1-203ENST00000577880 SLC4A1APQ9BWU0 796 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-203ENST00000577880 THOC2Q8NI27 1593 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-203ENST00000577880 OSCARQ8IYS5 282 aa4.35□□□□□ -1.71
SMCHD1-203ENST00000577880 IQSEC2Q5JU85 1478 aa4.35□□□□□ -1.71
SMCHD1-203ENST00000577880 EIF4G1Q04637 1599 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-203ENST00000577880 PLPPR3Q6T4P5 718 aa4.33□□□□□ -1.72
SMCHD1-203ENST00000577880 HECW2Q9P2P5 1572 aa4.32□□□□□ -1.72
SMCHD1-203ENST00000577880 UNC13AQ9UPW8 1703 aa4.32□□□□□ -1.72
SMCHD1-203ENST00000577880 IGSF5Q9NSI5 407 aa4.32□□□□□ -1.72
SMCHD1-203ENST00000577880 RSF1Q96T23 1441 aaPredicted RBP4.31□□□□□ -1.72
SMCHD1-203ENST00000577880 ARHGEF11O15085 1522 aa4.3□□□□□ -1.72
SMCHD1-203ENST00000577880 TRHP20396 242 aaPredicted RBP4.3□□□□□ -1.72
SMCHD1-203ENST00000577880 ITGAEP38570 1179 aa4.3□□□□□ -1.72
SMCHD1-203ENST00000577880 POLR3GLQ9BT43 218 aa4.3□□□□□ -1.72
SMCHD1-203ENST00000577880 ILDR2Q71H61 639 aa4.29□□□□□ -1.72
SMCHD1-203ENST00000577880 STAG3Q9UJ98 1225 aa4.29□□□□□ -1.72
SMCHD1-203ENST00000577880 SLC34A2O95436 690 aa4.29□□□□□ -1.72
SMCHD1-203ENST00000577880 PCGF6Q9BYE7 350 aa4.29□□□□□ -1.72
SMCHD1-203ENST00000577880 CDK11AQ9UQ88 783 aaPredicted RBP4.27□□□□□ -1.73
SMCHD1-203ENST00000577880 TOP2BQ02880 1626 aa4.27□□□□□ -1.73
SMCHD1-203ENST00000577880 CCER1Q8TC90 406 aaPredicted RBP4.25□□□□□ -1.73
SMCHD1-203ENST00000577880 CHMP7Q8WUX9 453 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-203ENST00000577880 TRIM52Q96A61 297 aa4.24□□□□□ -1.73
SMCHD1-203ENST00000577880 SLC24A1O60721 1099 aa4.23□□□□□ -1.73
SMCHD1-203ENST00000577880 ARID4BQ4LE39 1312 aaPredicted RBP4.22□□□□□ -1.73
SMCHD1-203ENST00000577880 FAM50AQ14320 339 aaKnown RBP4.22□□□□□ -1.73
SMCHD1-203ENST00000577880 FOXD1Q16676 465 aa4.22□□□□□ -1.73
SMCHD1-203ENST00000577880 ARID3CA6NKF2 412 aa4.21□□□□□ -1.73
SMCHD1-203ENST00000577880 NEFMP07197 916 aa4.21□□□□□ -1.73
SMCHD1-203ENST00000577880 ZNF777Q9ULD5 760 aaPredicted RBP4.21□□□□□ -1.73
SMCHD1-203ENST00000577880 CHGAP10645 457 aaKnown RBP4.21□□□□□ -1.74
SMCHD1-203ENST00000577880 SCAF1Q9H7N4 1312 aaKnown RBP4.2□□□□□ -1.74
SMCHD1-203ENST00000577880 C14orf37Q86TY3 774 aa4.2□□□□□ -1.74
SMCHD1-203ENST00000577880 SYNJ2O15056 1496 aa4.2□□□□□ -1.74
SMCHD1-203ENST00000577880 LAMC3Q9Y6N6 1575 aa4.19□□□□□ -1.74
SMCHD1-203ENST00000577880 A0A0G2JS52 829 aa4.19□□□□□ -1.74
SMCHD1-203ENST00000577880 CNGB1Q14028 1251 aaPredicted RBP4.19□□□□□ -1.74
SMCHD1-203ENST00000577880 HAP1P54257 671 aaPredicted RBP4.19□□□□□ -1.74
SMCHD1-203ENST00000577880 BAZ1BQ9UIG0 1483 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-203ENST00000577880 NEFLP07196 543 aa4.18□□□□□ -1.74
SMCHD1-203ENST00000577880 NPM2Q86SE8 214 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-203ENST00000577880 P3H3Q8IVL6 736 aa4.17□□□□□ -1.74
SMCHD1-203ENST00000577880 PPARGC1BQ86YN6 1023 aaKnown RBP4.16□□□□□ -1.74
SMCHD1-203ENST00000577880 ZEB1P37275 1124 aaPredicted RBP4.16□□□□□ -1.74
SMCHD1-203ENST00000577880 WDR62O43379 1518 aa4.16□□□□□ -1.74
SMCHD1-203ENST00000577880 ZNF326Q5BKZ1 582 aaKnown RBP4.16□□□□□ -1.74
SMCHD1-203ENST00000577880 ZBTB47Q9UFB7 747 aaPredicted RBP4.16□□□□□ -1.74
SMCHD1-203ENST00000577880 PPP1R15AO75807 674 aaPredicted RBP4.15□□□□□ -1.74
SMCHD1-203ENST00000577880 ERICH6Q7L0X2 663 aa4.15□□□□□ -1.75
SMCHD1-203ENST00000577880 ARAP1Q96P48 1450 aa4.14□□□□□ -1.75
SMCHD1-203ENST00000577880 KCNH8Q96L42 1107 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms