RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 CHIC1Q5VXU3 224 aa8.65□□□□□ -1.02
SMCHD1-211ENST00000584897 AEBP2Q6ZN18 517 aaPredicted RBP8.63□□□□□ -1.03
SMCHD1-211ENST00000584897 SENP3Q9H4L4 574 aaPredicted RBP7.84□□□□□ -1.15
SMCHD1-211ENST00000584897 PHF23Q9BUL5 403 aaPredicted RBP7.56□□□□□ -1.2
SMCHD1-211ENST00000584897 PLPPR3Q6T4P5 718 aa7.09□□□□□ -1.27
SMCHD1-211ENST00000584897 FOXD1Q16676 465 aa6.98□□□□□ -1.29
SMCHD1-211ENST00000584897 MSH5O43196 834 aa6.89□□□□□ -1.31
SMCHD1-211ENST00000584897 PIAS4Q8N2W9 510 aaPredicted RBP6.72□□□□□ -1.33
SMCHD1-211ENST00000584897 SCAF1Q9H7N4 1312 aaKnown RBP6.54□□□□□ -1.36
SMCHD1-211ENST00000584897 ADRA2BP18089 450 aa6.53□□□□□ -1.36
SMCHD1-211ENST00000584897 PPP6R1Q9UPN7 881 aa6.41□□□□□ -1.38
SMCHD1-211ENST00000584897 NCBP3Q53F19 620 aaKnown RBP6.24□□□□□ -1.41
SMCHD1-211ENST00000584897 POTEDQ86YR6 584 aa6.23□□□□□ -1.41
SMCHD1-211ENST00000584897 DMRT2Q9Y5R5 561 aa6.11□□□□□ -1.43
SMCHD1-211ENST00000584897 PPP4R3CPQ6ZMV5 832 aa6.11□□□□□ -1.43
SMCHD1-211ENST00000584897 CNKSR2Q8WXI2 1034 aa6.09□□□□□ -1.44
SMCHD1-211ENST00000584897 DCAF8L1A6NGE4 600 aa5.97□□□□□ -1.45
SMCHD1-211ENST00000584897 RNF216Q9NWF9 866 aaPredicted RBP5.97□□□□□ -1.45
SMCHD1-211ENST00000584897 APLP2Q06481 763 aa5.95□□□□□ -1.46
SMCHD1-211ENST00000584897 HOXD11P31277 338 aaPredicted RBP5.9□□□□□ -1.46
SMCHD1-211ENST00000584897 DNAJC5BQ9UF47 199 aa5.89□□□□□ -1.47
SMCHD1-211ENST00000584897 MAPK8IP2Q13387 824 aaPredicted RBP5.88□□□□□ -1.47
SMCHD1-211ENST00000584897 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.81□□□□□ -1.484e-9■□□□□ 8.9
SMCHD1-211ENST00000584897 CACNB1Q02641 598 aaPredicted RBP5.8□□□□□ -1.48
SMCHD1-211ENST00000584897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.79□□□□□ -1.48
SMCHD1-211ENST00000584897 HNRNPUL2Q1KMD3 747 aaKnown RBP5.79□□□□□ -1.48
SMCHD1-211ENST00000584897 C1QBPQ07021 282 aaKnown RBP5.77□□□□□ -1.49
SMCHD1-211ENST00000584897 NPM3O75607 178 aaKnown RBP5.69□□□□□ -1.5
SMCHD1-211ENST00000584897 SAMD1Q6SPF0 538 aaPredicted RBP5.64□□□□□ -1.51
SMCHD1-211ENST00000584897 RNF39Q9H2S5 420 aa5.63□□□□□ -1.51
SMCHD1-211ENST00000584897 KCNA4P22459 653 aa5.58□□□□□ -1.52
SMCHD1-211ENST00000584897 ZNF219Q9P2Y4 722 aaPredicted RBP5.56□□□□□ -1.52
SMCHD1-211ENST00000584897 SLC4A1APQ9BWU0 796 aaKnown RBP5.55□□□□□ -1.52
SMCHD1-211ENST00000584897 CAPN15O75808 1086 aa5.52□□□□□ -1.53
SMCHD1-211ENST00000584897 MYCNP04198 464 aaPredicted RBP5.52□□□□□ -1.53
SMCHD1-211ENST00000584897 ZBTB12Q9Y330 459 aaPredicted RBP5.51□□□□□ -1.53
SMCHD1-211ENST00000584897 FOXD4L1Q9NU39 408 aa5.45□□□□□ -1.54
SMCHD1-211ENST00000584897 RBM42Q9BTD8 480 aaKnown RBP5.44□□□□□ -1.54
SMCHD1-211ENST00000584897 ATXN8OSP0DMR3 200 aa5.41□□□□□ -1.54
SMCHD1-211ENST00000584897 U3KPZ7 1027 aaPredicted RBP5.41□□□□□ -1.54
SMCHD1-211ENST00000584897 TRHP20396 242 aaPredicted RBP5.4□□□□□ -1.55
SMCHD1-211ENST00000584897 FBLN2P98095 1184 aa5.35□□□□□ -1.55
SMCHD1-211ENST00000584897 SLC4A2P04920 1241 aa5.29□□□□□ -1.56
SMCHD1-211ENST00000584897 DSG3P32926 999 aa5.27□□□□□ -1.57
SMCHD1-211ENST00000584897 SPINK5Q9NQ38 1064 aaPredicted RBP5.23□□□□□ -1.57
SMCHD1-211ENST00000584897 ABCB7O75027 752 aa5.22□□□□□ -1.57
SMCHD1-211ENST00000584897 POLA2Q14181 598 aa5.21□□□□□ -1.58
SMCHD1-211ENST00000584897 AKT1S1Q96B36 256 aa5.18□□□□□ -1.58
SMCHD1-211ENST00000584897 SPDYE2BA6NHP3 402 aa5.16□□□□□ -1.58
SMCHD1-211ENST00000584897 SPDYE6P0CI01 402 aa5.16□□□□□ -1.58
SMCHD1-211ENST00000584897 SPDYE2Q495Y8 402 aa5.16□□□□□ -1.58
SMCHD1-211ENST00000584897 STAG3Q9UJ98 1225 aa5.12□□□□□ -1.59
SMCHD1-211ENST00000584897 SPDYE1Q8NFV5 336 aaPredicted RBP5.1□□□□□ -1.59
SMCHD1-211ENST00000584897 PLEKHG5O94827 1062 aa5.08□□□□□ -1.6
SMCHD1-211ENST00000584897 ZBTB22O15209 634 aa5.07□□□□□ -1.6
SMCHD1-211ENST00000584897 ZNF692Q9BU19 519 aaPredicted RBP5.05□□□□□ -1.6
SMCHD1-211ENST00000584897 EHMT2Q96KQ7 1210 aa5.02□□□□□ -1.61
SMCHD1-211ENST00000584897 POTEHQ6S545 545 aa5□□□□□ -1.61
SMCHD1-211ENST00000584897 CHRDL2Q6WN34 429 aa4.99□□□□□ -1.61
SMCHD1-211ENST00000584897 CLCN6P51797 869 aa4.99□□□□□ -1.61
SMCHD1-211ENST00000584897 PAK3O75914 559 aaPredicted RBP4.97□□□□□ -1.61
SMCHD1-211ENST00000584897 REM2Q8IYK8 340 aaPredicted RBP4.97□□□□□ -1.61
SMCHD1-211ENST00000584897 OSCARQ8IYS5 282 aa4.96□□□□□ -1.61
SMCHD1-211ENST00000584897 PRR29P0C7W0 189 aa4.95□□□□□ -1.62
SMCHD1-211ENST00000584897 NPM1P06748 294 aaKnown RBP eCLIP4.95□□□□□ -1.62
SMCHD1-211ENST00000584897 CLEC11AQ9Y240 323 aa4.95□□□□□ -1.62
SMCHD1-211ENST00000584897 CSRNP3Q8WYN3 585 aa4.95□□□□□ -1.62
SMCHD1-211ENST00000584897 ZBTB47Q9UFB7 747 aaPredicted RBP4.93□□□□□ -1.62
SMCHD1-211ENST00000584897 ATF5Q9Y2D1 282 aaPredicted RBP4.91□□□□□ -1.62
SMCHD1-211ENST00000584897 SSUH2Q9Y2M2 353 aa4.91□□□□□ -1.62
SMCHD1-211ENST00000584897 PABPN1Q86U42 306 aaKnown RBP eCLIP4.89□□□□□ -1.63
SMCHD1-211ENST00000584897 SPDYE4A6NLX3 237 aa4.88□□□□□ -1.63
SMCHD1-211ENST00000584897 FBXO3Q9UK99 471 aa4.88□□□□□ -1.63
SMCHD1-211ENST00000584897 HAX1O00165 279 aa4.87□□□□□ -1.63
SMCHD1-211ENST00000584897 PITPNM1O00562 1244 aa4.85□□□□□ -1.63
SMCHD1-211ENST00000584897 FXR2P51116 673 aaKnown RBP eCLIP4.84□□□□□ -1.641e-7■■■■□ 25.3
SMCHD1-211ENST00000584897 PRKAR2AP13861 404 aaKnown RBP4.83□□□□□ -1.64
SMCHD1-211ENST00000584897 PIP4P2Q8N4L2 257 aa4.81□□□□□ -1.64
SMCHD1-211ENST00000584897 PLCD3Q8N3E9 789 aa4.78□□□□□ -1.64
SMCHD1-211ENST00000584897 MKRN4PQ13434 485 aaPredicted RBP4.77□□□□□ -1.65
SMCHD1-211ENST00000584897 SP7Q8TDD2 431 aaPredicted RBP4.77□□□□□ -1.65
SMCHD1-211ENST00000584897 MIER1Q8N108 512 aa4.75□□□□□ -1.65
SMCHD1-211ENST00000584897 FARP1Q9Y4F1 1045 aaPredicted RBP4.73□□□□□ -1.65
SMCHD1-211ENST00000584897 TAOK2Q9UL54 1235 aa4.72□□□□□ -1.65
SMCHD1-211ENST00000584897 DCBLD2Q96PD2 775 aa4.72□□□□□ -1.65
SMCHD1-211ENST00000584897 CD44P16070 742 aaKnown RBP4.71□□□□□ -1.66
SMCHD1-211ENST00000584897 C19orf67A6NJJ6 358 aa4.7□□□□□ -1.66
SMCHD1-211ENST00000584897 KLHL34Q8N239 644 aa4.7□□□□□ -1.66
SMCHD1-211ENST00000584897 ZRANB1Q9UGI0 708 aa4.69□□□□□ -1.66
SMCHD1-211ENST00000584897 GSE1Q14687 1217 aa4.68□□□□□ -1.66
SMCHD1-211ENST00000584897 TRIM41Q8WV44 630 aa4.68□□□□□ -1.66
SMCHD1-211ENST00000584897 FAM212AQ96EL1 285 aa4.68□□□□□ -1.66
SMCHD1-211ENST00000584897 MAMSTRQ6ZN01 415 aa4.67□□□□□ -1.66
SMCHD1-211ENST00000584897 FKBP8Q14318 412 aa4.66□□□□□ -1.66
SMCHD1-211ENST00000584897 ZNF579Q8NAF0 562 aaKnown RBP4.65□□□□□ -1.67
SMCHD1-211ENST00000584897 SGIP1Q9BQI5 828 aa4.64□□□□□ -1.67
SMCHD1-211ENST00000584897 CHADLQ6NUI6 762 aa4.63□□□□□ -1.67
SMCHD1-211ENST00000584897 CREBZFQ9NS37 354 aa4.62□□□□□ -1.67
SMCHD1-211ENST00000584897 G3V3G9 751 aa4.61□□□□□ -1.67
SMCHD1-211ENST00000584897 DCAF8Q5TAQ9 597 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms