RNA–Protein interactions for RNA: ENST00000449062.1

RTFDC1-204, Transcript of Protein RTF2 homolog, humanhuman

TSL 5

Gene RTFDC1, Length 852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-204ENST00000449062 NISCHQ9Y2I1 1504 aa34.6■■■■□ 3.13
RTFDC1-204ENST00000449062 CCDC180Q9P1Z9 1646 aa30.71■■■□□ 2.51
RTFDC1-204ENST00000449062 ABCC9O60706 1549 aa30.35■■■□□ 2.45
RTFDC1-204ENST00000449062 RB1CC1Q8TDY2 1594 aa29.05■■■□□ 2.24
RTFDC1-204ENST00000449062 NACADO15069 1562 aa29.01■■■□□ 2.23
RTFDC1-204ENST00000449062 DCAF8L2P0C7V8 631 aa29■■■□□ 2.23
RTFDC1-204ENST00000449062 MYO15BQ96JP2 1530 aa28.84■■■□□ 2.21
RTFDC1-204ENST00000449062 ZCCHC6Q5VYS8 1495 aaKnown RBP28.75■■■□□ 2.19
RTFDC1-204ENST00000449062 DCAF1Q9Y4B6 1507 aa28.63■■■□□ 2.17
RTFDC1-204ENST00000449062 PABPN1Q86U42 306 aaKnown RBP eCLIP28.42■■■□□ 2.146e-6■■■■□ 21.1
RTFDC1-204ENST00000449062 UNC13AQ9UPW8 1703 aa28.32■■■□□ 2.12
RTFDC1-204ENST00000449062 BICRAQ9NZM4 1560 aa28.27■■■□□ 2.12
RTFDC1-204ENST00000449062 DNAJC5BQ9UF47 199 aa28.26■■■□□ 2.11
RTFDC1-204ENST00000449062 SCRIBQ14160 1630 aa28.01■■■□□ 2.07
RTFDC1-204ENST00000449062 SHROOM4Q9ULL8 1493 aa27.89■■■□□ 2.05
RTFDC1-204ENST00000449062 EIF4G1Q04637 1599 aaKnown RBP27.48■■□□□ 1.99
RTFDC1-204ENST00000449062 CC2D2AQ9P2K1 1620 aa27.41■■□□□ 1.98
RTFDC1-204ENST00000449062 CECR2Q9BXF3 1484 aa27.31■■□□□ 1.96
RTFDC1-204ENST00000449062 NCAPD3P42695 1498 aa26.87■■□□□ 1.89
RTFDC1-204ENST00000449062 ATAD2BQ9ULI0 1458 aa26.82■■□□□ 1.88
RTFDC1-204ENST00000449062 SMARCA4P51532 1647 aa26.82■■□□□ 1.88
RTFDC1-204ENST00000449062 BAZ1AQ9NRL2 1556 aaPredicted RBP26.77■■□□□ 1.88
RTFDC1-204ENST00000449062 SMARCA2P51531 1590 aa26.69■■□□□ 1.86
RTFDC1-204ENST00000449062 MROH2BQ7Z745 1585 aa26.67■■□□□ 1.86
RTFDC1-204ENST00000449062 PEG3Q9GZU2 1588 aa26.62■■□□□ 1.85
RTFDC1-204ENST00000449062 HMGXB3Q12766 1538 aa26.6■■□□□ 1.85
RTFDC1-204ENST00000449062 BAZ1BQ9UIG0 1483 aaKnown RBP26.5■■□□□ 1.83
RTFDC1-204ENST00000449062 RSF1Q96T23 1441 aaPredicted RBP26.34■■□□□ 1.81
RTFDC1-204ENST00000449062 WIZO95785 1651 aa26.3■■□□□ 1.8
RTFDC1-204ENST00000449062 NESP48681 1621 aa26.24■■□□□ 1.79
RTFDC1-204ENST00000449062 ERCC6Q03468 1493 aa26.11■■□□□ 1.77
RTFDC1-204ENST00000449062 CADPSQ9ULU8 1353 aa26.07■■□□□ 1.76
RTFDC1-204ENST00000449062 LAMC3Q9Y6N6 1575 aa26.06■■□□□ 1.76
RTFDC1-204ENST00000449062 TOP2AP11388 1531 aaKnown RBP26.01■■□□□ 1.75
RTFDC1-204ENST00000449062 CUX2O14529 1486 aa25.96■■□□□ 1.75
RTFDC1-204ENST00000449062 PDS5BQ9NTI5 1447 aa25.96■■□□□ 1.75
RTFDC1-204ENST00000449062 CFTRP13569 1480 aa25.85■■□□□ 1.73
RTFDC1-204ENST00000449062 CCDC88BA6NC98 1476 aa25.8■■□□□ 1.72
RTFDC1-204ENST00000449062 THOC2Q8NI27 1593 aaKnown RBP25.79■■□□□ 1.72
RTFDC1-204ENST00000449062 KIF21AQ7Z4S6 1674 aa25.78■■□□□ 1.72
RTFDC1-204ENST00000449062 FANCD2Q9BXW9 1451 aa25.7■■□□□ 1.7
RTFDC1-204ENST00000449062 MRC2Q9UBG0 1479 aa25.66■■□□□ 1.7
RTFDC1-204ENST00000449062 CEP164Q9UPV0 1460 aa25.63■■□□□ 1.69
RTFDC1-204ENST00000449062 WDR62O43379 1518 aa25.58■■□□□ 1.69
RTFDC1-204ENST00000449062 DNAJC5Q9H3Z4 198 aa25.56■■□□□ 1.68
RTFDC1-204ENST00000449062 SUPT5HO00267 1087 aaKnown RBP25.49■■□□□ 1.67
RTFDC1-204ENST00000449062 URB2Q14146 1524 aaKnown RBP25.48■■□□□ 1.67
RTFDC1-204ENST00000449062 PRDM2Q13029 1718 aa25.39■■□□□ 1.65
RTFDC1-204ENST00000449062 TOPBP1Q92547 1522 aa25.27■■□□□ 1.64
RTFDC1-204ENST00000449062 ABCC8Q09428 1581 aa25.24■■□□□ 1.63
RTFDC1-204ENST00000449062 DNMBPQ6XZF7 1577 aa25.17■■□□□ 1.62
RTFDC1-204ENST00000449062 IFT140Q96RY7 1462 aa25.15■■□□□ 1.62
RTFDC1-204ENST00000449062 ZNF608Q9ULD9 1512 aaPredicted RBP25.1■■□□□ 1.61
RTFDC1-204ENST00000449062 POLA1P09884 1462 aaPredicted RBP25.05■■□□□ 1.6
RTFDC1-204ENST00000449062 CUX1P39880 1505 aa25.01■■□□□ 1.59
RTFDC1-204ENST00000449062 TARBP1Q13395 1621 aaKnown RBP25■■□□□ 1.59
RTFDC1-204ENST00000449062 SOGA1O94964 1423 aa24.98■■□□□ 1.59
RTFDC1-204ENST00000449062 RAD54L2Q9Y4B4 1467 aa24.97■■□□□ 1.59
RTFDC1-204ENST00000449062 AQRO60306 1485 aaKnown RBP eCLIP24.96■■□□□ 1.594e-8■■□□□ 11.4
RTFDC1-204ENST00000449062 OSCARQ8IYS5 282 aa24.95■■□□□ 1.58
RTFDC1-204ENST00000449062 FGD5Q6ZNL6 1462 aa24.94■■□□□ 1.58
RTFDC1-204ENST00000449062 TDRD9Q8NDG6 1382 aaKnown RBP24.89■■□□□ 1.57
RTFDC1-204ENST00000449062 EIF4G3O43432 1585 aaKnown RBP24.86■■□□□ 1.57
RTFDC1-204ENST00000449062 WRNQ14191 1432 aaPredicted RBP eCLIP24.78■■□□□ 1.56
RTFDC1-204ENST00000449062 WDR97A6NE52 1622 aa24.72■■□□□ 1.55
RTFDC1-204ENST00000449062 ABCA10Q8WWZ4 1543 aa24.71■■□□□ 1.55
RTFDC1-204ENST00000449062 TOP2BQ02880 1626 aa24.7■■□□□ 1.54
RTFDC1-204ENST00000449062 SYNJ1O43426 1573 aa24.69■■□□□ 1.54
RTFDC1-204ENST00000449062 GRIN2BQ13224 1484 aa24.67■■□□□ 1.54
RTFDC1-204ENST00000449062 BIVM-ERCC5R4GMW8 1640 aa24.66■■□□□ 1.54
RTFDC1-204ENST00000449062 FBLN2P98095 1184 aa24.65■■□□□ 1.54
RTFDC1-204ENST00000449062 GAPVD1Q14C86 1478 aa24.64■■□□□ 1.54
RTFDC1-204ENST00000449062 SNAPC4Q5SXM2 1469 aa24.63■■□□□ 1.53
RTFDC1-204ENST00000449062 MAGI1Q96QZ7 1491 aaPredicted RBP24.6■■□□□ 1.53
RTFDC1-204ENST00000449062 CHMP7Q8WUX9 453 aaPredicted RBP24.57■■□□□ 1.52
RTFDC1-204ENST00000449062 ABCA5Q8WWZ7 1642 aa24.57■■□□□ 1.52
RTFDC1-204ENST00000449062 CHD1O14646 1710 aa24.55■■□□□ 1.52
RTFDC1-204ENST00000449062 SYNJ2O15056 1496 aa24.52■■□□□ 1.52
RTFDC1-204ENST00000449062 TRIM41Q8WV44 630 aa24.5■■□□□ 1.51
RTFDC1-204ENST00000449062 ARHGEF11O15085 1522 aa24.45■■□□□ 1.5
RTFDC1-204ENST00000449062 PBRM1Q86U86 1689 aa24.44■■□□□ 1.5
RTFDC1-204ENST00000449062 RIMBP3CA6NJZ7 1639 aa24.43■■□□□ 1.5
RTFDC1-204ENST00000449062 RIMBP3BA6NNM3 1639 aa24.43■■□□□ 1.5
RTFDC1-204ENST00000449062 RIMBP3Q9UFD9 1639 aa24.43■■□□□ 1.5
RTFDC1-204ENST00000449062 CLASP1Q7Z460 1538 aa24.4■■□□□ 1.5
RTFDC1-204ENST00000449062 ERICH3Q5RHP9 1530 aa24.38■■□□□ 1.49
RTFDC1-204ENST00000449062 FHAD1B1AJZ9 1412 aa24.36■■□□□ 1.49
RTFDC1-204ENST00000449062 GRIN2AQ12879 1464 aa24.33■■□□□ 1.49
RTFDC1-204ENST00000449062 IGF1RP08069 1367 aa24.32■■□□□ 1.48
RTFDC1-204ENST00000449062 CYB5RLQ6IPT4 315 aa24.32■■□□□ 1.48
RTFDC1-204ENST00000449062 ADAMTS12P58397 1594 aa24.32■■□□□ 1.48
RTFDC1-204ENST00000449062 NUP160Q12769 1436 aa24.29■■□□□ 1.48
RTFDC1-204ENST00000449062 KIF27Q86VH2 1401 aa24.27■■□□□ 1.48
RTFDC1-204ENST00000449062 ARAP1Q96P48 1450 aa24.26■■□□□ 1.47
RTFDC1-204ENST00000449062 CEP170Q5SW79 1584 aa24.2■■□□□ 1.47
RTFDC1-204ENST00000449062 JPH4Q96JJ6 628 aa24.1■■□□□ 1.45
RTFDC1-204ENST00000449062 CARMIL1Q5VZK9 1371 aa24.1■■□□□ 1.45
RTFDC1-204ENST00000449062 ERCC6L2Q5T890 1561 aa24.07■■□□□ 1.44
RTFDC1-204ENST00000449062 RUSC2Q8N2Y8 1516 aa24.06■■□□□ 1.44
RTFDC1-204ENST00000449062 SHROOM2Q13796 1616 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms