RNA–Protein interactions for RNA: ENST00000333877.8

NELFA-201, Transcript of negative elongation factor complex member A, humanhuman

TSL 2

Gene NELFA, Length 2,228 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFA-201ENST00000333877 NISCHQ9Y2I1 1504 aa41.19■■■■■ 4.18
NELFA-201ENST00000333877 CCDC180Q9P1Z9 1646 aa35.68■■■■□ 3.3
NELFA-201ENST00000333877 ZCCHC6Q5VYS8 1495 aaKnown RBP34.65■■■■□ 3.14
NELFA-201ENST00000333877 DCAF8L2P0C7V8 631 aa34.08■■■■□ 3.05
NELFA-201ENST00000333877 SHROOM4Q9ULL8 1493 aa34.02■■■■□ 3.04
NELFA-201ENST00000333877 DCAF1Q9Y4B6 1507 aa33.97■■■■□ 3.03
NELFA-201ENST00000333877 ABCC9O60706 1549 aa33.58■■■□□ 2.97
NELFA-201ENST00000333877 MYO15BQ96JP2 1530 aa33.41■■■□□ 2.94
NELFA-201ENST00000333877 NACADO15069 1562 aa33.17■■■□□ 2.9
NELFA-201ENST00000333877 SCRIBQ14160 1630 aa33■■■□□ 2.87
NELFA-201ENST00000333877 SUPT5HO00267 1087 aaKnown RBP32.9■■■□□ 2.86
NELFA-201ENST00000333877 RB1CC1Q8TDY2 1594 aa32.82■■■□□ 2.85
NELFA-201ENST00000333877 UNC13AQ9UPW8 1703 aa32.24■■■□□ 2.75
NELFA-201ENST00000333877 RSF1Q96T23 1441 aaPredicted RBP32.12■■■□□ 2.73
NELFA-201ENST00000333877 CECR2Q9BXF3 1484 aa32.04■■■□□ 2.72
NELFA-201ENST00000333877 MROH2BQ7Z745 1585 aa31.88■■■□□ 2.69
NELFA-201ENST00000333877 BICRAQ9NZM4 1560 aa31.86■■■□□ 2.69
NELFA-201ENST00000333877 PABPN1Q86U42 306 aaKnown RBP eCLIP31.79■■■□□ 2.68
NELFA-201ENST00000333877 BAZ1AQ9NRL2 1556 aaPredicted RBP31.76■■■□□ 2.67
NELFA-201ENST00000333877 WIZO95785 1651 aa31.66■■■□□ 2.66
NELFA-201ENST00000333877 CHIC1Q5VXU3 224 aa31.62■■■□□ 2.65
NELFA-201ENST00000333877 SMARCA4P51532 1647 aa31.59■■■□□ 2.65
NELFA-201ENST00000333877 TOP2AP11388 1531 aaKnown RBP31.27■■■□□ 2.6
NELFA-201ENST00000333877 PEG3Q9GZU2 1588 aa31.13■■■□□ 2.57
NELFA-201ENST00000333877 SMARCA2P51531 1590 aa31.01■■■□□ 2.55
NELFA-201ENST00000333877 CCDC88BA6NC98 1476 aa31■■■□□ 2.55
NELFA-201ENST00000333877 ATAD2BQ9ULI0 1458 aa30.99■■■□□ 2.55
NELFA-201ENST00000333877 EIF4G1Q04637 1599 aaKnown RBP30.88■■■□□ 2.53
NELFA-201ENST00000333877 TRIM41Q8WV44 630 aa30.85■■■□□ 2.53
NELFA-201ENST00000333877 BAZ1BQ9UIG0 1483 aaKnown RBP30.85■■■□□ 2.53
NELFA-201ENST00000333877 NCAPD3P42695 1498 aa30.63■■■□□ 2.49
NELFA-201ENST00000333877 HMGXB3Q12766 1538 aa30.6■■■□□ 2.49
NELFA-201ENST00000333877 ABCC8Q09428 1581 aa30.51■■■□□ 2.48
NELFA-201ENST00000333877 LOC105371045A0A1W2PR82 267 aa30.5■■■□□ 2.47
NELFA-201ENST00000333877 FAM9AQ8IZU1 332 aaPredicted RBP30.38■■■□□ 2.45
NELFA-201ENST00000333877 CC2D2AQ9P2K1 1620 aa30.35■■■□□ 2.45
NELFA-201ENST00000333877 WRNQ14191 1432 aaPredicted RBP eCLIP30.22■■■□□ 2.43
NELFA-201ENST00000333877 SYNJ1O43426 1573 aa30.1■■■□□ 2.41
NELFA-201ENST00000333877 CFTRP13569 1480 aa30.07■■■□□ 2.4
NELFA-201ENST00000333877 EHMT2Q96KQ7 1210 aa30.02■■■□□ 2.4
NELFA-201ENST00000333877 SOGA1O94964 1423 aa30.01■■■□□ 2.39
NELFA-201ENST00000333877 EEA1Q15075 1411 aa29.91■■■□□ 2.38
NELFA-201ENST00000333877 TOP2BQ02880 1626 aa29.91■■■□□ 2.38
NELFA-201ENST00000333877 PRDM2Q13029 1718 aa29.91■■■□□ 2.38
NELFA-201ENST00000333877 CADPSQ9ULU8 1353 aa29.9■■■□□ 2.38
NELFA-201ENST00000333877 RUSC2Q8N2Y8 1516 aa29.9■■■□□ 2.38
NELFA-201ENST00000333877 BIVM-ERCC5R4GMW8 1640 aa29.85■■■□□ 2.37
NELFA-201ENST00000333877 CSRNP3Q8WYN3 585 aa29.8■■■□□ 2.36
NELFA-201ENST00000333877 CUX1P39880 1505 aa29.78■■■□□ 2.36
NELFA-201ENST00000333877 NESP48681 1621 aa29.6■■■□□ 2.33
NELFA-201ENST00000333877 DNAJC5BQ9UF47 199 aa29.59■■■□□ 2.33
NELFA-201ENST00000333877 FANCD2Q9BXW9 1451 aa29.59■■■□□ 2.33
NELFA-201ENST00000333877 GOLGA3Q08378 1498 aa29.57■■■□□ 2.32
NELFA-201ENST00000333877 TNIKQ9UKE5 1360 aa29.54■■■□□ 2.32
NELFA-201ENST00000333877 KIF21BO75037 1637 aa29.53■■■□□ 2.32
NELFA-201ENST00000333877 CEP164Q9UPV0 1460 aa29.53■■■□□ 2.32
NELFA-201ENST00000333877 LAMC3Q9Y6N6 1575 aa29.53■■■□□ 2.32
NELFA-201ENST00000333877 UBTFP17480 764 aaKnown RBP29.51■■■□□ 2.31
NELFA-201ENST00000333877 PCGF6Q9BYE7 350 aa29.47■■■□□ 2.31
NELFA-201ENST00000333877 CEP162Q5TB80 1403 aa29.45■■■□□ 2.3
NELFA-201ENST00000333877 KIF27Q86VH2 1401 aa29.41■■■□□ 2.3
NELFA-201ENST00000333877 FGD5Q6ZNL6 1462 aa29.4■■■□□ 2.3
NELFA-201ENST00000333877 RAPGEF2Q9Y4G8 1499 aa29.36■■■□□ 2.29
NELFA-201ENST00000333877 DNMBPQ6XZF7 1577 aa29.36■■■□□ 2.29
NELFA-201ENST00000333877 PDS5BQ9NTI5 1447 aa29.31■■■□□ 2.28
NELFA-201ENST00000333877 TOPBP1Q92547 1522 aa29.31■■■□□ 2.28
NELFA-201ENST00000333877 TRIM26Q12899 539 aaPredicted RBP29.3■■■□□ 2.28
NELFA-201ENST00000333877 PRXQ9BXM0 1461 aa29.29■■■□□ 2.28
NELFA-201ENST00000333877 CUX2O14529 1486 aa29.29■■■□□ 2.28
NELFA-201ENST00000333877 ERICH3Q5RHP9 1530 aa29.25■■■□□ 2.27
NELFA-201ENST00000333877 URB2Q14146 1524 aaKnown RBP29.21■■■□□ 2.27
NELFA-201ENST00000333877 KIF21AQ7Z4S6 1674 aa29.21■■■□□ 2.27
NELFA-201ENST00000333877 POLA1P09884 1462 aaPredicted RBP29.2■■■□□ 2.26
NELFA-201ENST00000333877 RAD54L2Q9Y4B4 1467 aa29.16■■■□□ 2.26
NELFA-201ENST00000333877 IGF1RP08069 1367 aa29.14■■■□□ 2.26
NELFA-201ENST00000333877 CLIP1P30622 1438 aa29.13■■■□□ 2.25
NELFA-201ENST00000333877 ABCA10Q8WWZ4 1543 aa29.1■■■□□ 2.25
NELFA-201ENST00000333877 PPARGC1BQ86YN6 1023 aaKnown RBP29.1■■■□□ 2.25
NELFA-201ENST00000333877 RANGAP1P46060 587 aaPredicted RBP29.02■■■□□ 2.24
NELFA-201ENST00000333877 CARMIL1Q5VZK9 1371 aa29■■■□□ 2.23
NELFA-201ENST00000333877 WDR97A6NE52 1622 aa28.97■■■□□ 2.23
NELFA-201ENST00000333877 MRC2Q9UBG0 1479 aa28.92■■■□□ 2.22
NELFA-201ENST00000333877 VPS8Q8N3P4 1428 aa28.91■■■□□ 2.22
NELFA-201ENST00000333877 TDRD9Q8NDG6 1382 aaKnown RBP28.85■■■□□ 2.21
NELFA-201ENST00000333877 HRCP23327 699 aa28.85■■■□□ 2.21
NELFA-201ENST00000333877 ABCA5Q8WWZ7 1642 aa28.84■■■□□ 2.21
NELFA-201ENST00000333877 CUL7Q14999 1698 aa28.83■■■□□ 2.21
NELFA-201ENST00000333877 TARBP1Q13395 1621 aaKnown RBP28.82■■■□□ 2.2
NELFA-201ENST00000333877 TTBK1Q5TCY1 1321 aaPredicted RBP28.81■■■□□ 2.2
NELFA-201ENST00000333877 ARAP1Q96P48 1450 aa28.8■■■□□ 2.2
NELFA-201ENST00000333877 GAPVD1Q14C86 1478 aa28.79■■■□□ 2.2
NELFA-201ENST00000333877 WDR62O43379 1518 aa28.74■■■□□ 2.19
NELFA-201ENST00000333877 ERCC6Q03468 1493 aa28.73■■■□□ 2.19
NELFA-201ENST00000333877 ARHGAP35Q9NRY4 1499 aa28.72■■■□□ 2.19
NELFA-201ENST00000333877 APLP2Q06481 763 aa28.67■■■□□ 2.18
NELFA-201ENST00000333877 IFT140Q96RY7 1462 aa28.61■■■□□ 2.17
NELFA-201ENST00000333877 PBRM1Q86U86 1689 aa28.6■■■□□ 2.17
NELFA-201ENST00000333877 AQRO60306 1485 aaKnown RBP eCLIP28.6■■■□□ 2.172e-7■■■□□ 18
NELFA-201ENST00000333877 CTTNBP2Q8WZ74 1663 aa28.59■■■□□ 2.17
NELFA-201ENST00000333877 THOC2Q8NI27 1593 aaKnown RBP28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms