Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ACO2-204ENST00000471094 699 ntTSL 329.07■■■□□ 2.242e-8■□□□□ 9.8
YBX3P16989 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.52e-8■□□□□ 9.8
YBX3P16989 SACM1L-207ENST00000455997 4661 ntTSL 1 (best)20.87■□□□□ 0.932e-9■□□□□ 9.8
YBX3P16989 SKP2-207ENST00000513263 694 ntTSL 214.97□□□□□ -0.013e-9■□□□□ 9.8
YBX3P16989 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.032e-9■□□□□ 9.8
YBX3P16989 SKP2-206ENST00000513151 901 ntTSL 311.5□□□□□ -0.573e-9■□□□□ 9.8
YBX3P16989 SACM1L-211ENST00000464102 3043 ntTSL 24.92□□□□□ -1.622e-9■□□□□ 9.8
YBX3P16989 KANSL3-211ENST00000452268 1448 ntTSL 522.52■■□□□ 1.24e-8■□□□□ 9.8
YBX3P16989 KANSL3-219ENST00000488907 763 ntTSL 319.65■□□□□ 0.744e-8■□□□□ 9.8
YBX3P16989 KANSL3-205ENST00000425656 1526 ntTSL 515.55■□□□□ 0.084e-8■□□□□ 9.8
YBX3P16989 KANSL3-207ENST00000444759 2717 ntTSL 214.84□□□□□ -0.034e-8■□□□□ 9.8
YBX3P16989 KANSL3-209ENST00000448075 701 ntTSL 514.72□□□□□ -0.054e-8■□□□□ 9.8
YBX3P16989 KANSL3-201ENST00000354204 5253 ntTSL 1 (best)10.41□□□□□ -0.744e-8■□□□□ 9.8
YBX3P16989 KANSL3-204ENST00000420155 5028 ntTSL 1 (best)10.23□□□□□ -0.774e-8■□□□□ 9.8
YBX3P16989 KANSL3-206ENST00000431828 5153 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.84e-8■□□□□ 9.8
YBX3P16989 KANSL3-218ENST00000487070 4937 ntTSL 1 (best)9.86□□□□□ -0.834e-8■□□□□ 9.8
YBX3P16989 KANSL3-208ENST00000447759 5012 ntTSL 59.85□□□□□ -0.834e-8■□□□□ 9.8
YBX3P16989 KANSL3-220ENST00000597150 2811 ntTSL 29.82□□□□□ -0.844e-8■□□□□ 9.8
YBX3P16989 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC34.28■■■■□ 3.084e-13■□□□□ 9.8
YBX3P16989 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.754e-13■□□□□ 9.8
YBX3P16989 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC32.12■■■□□ 2.734e-13■□□□□ 9.8
YBX3P16989 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.014e-13■□□□□ 9.8
YBX3P16989 EIF5A-209ENST00000573714 602 ntTSL 327.59■■■□□ 2.014e-13■□□□□ 9.8
YBX3P16989 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.614e-13■□□□□ 9.8
YBX3P16989 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.98■■□□□ 1.114e-13■□□□□ 9.8
YBX3P16989 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.914e-13■□□□□ 9.8
YBX3P16989 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC16.71■□□□□ 0.274e-13■□□□□ 9.8
YBX3P16989 PTBP1-217ENST00000592113 1548 ntTSL 527.35■■□□□ 1.977e-13■□□□□ 9.8
YBX3P16989 PTBP1-214ENST00000589575 749 ntTSL 317.33■□□□□ 0.367e-13■□□□□ 9.8
YBX3P16989 PTBP1-205ENST00000585535 314 ntTSL 315.18■□□□□ 0.027e-13■□□□□ 9.8
YBX3P16989 PTBP1-213ENST00000587191 357 ntTSL 515.07■□□□□ 07e-13■□□□□ 9.8
YBX3P16989 ACTB-212ENST00000484841 1032 ntTSL 527.24■■□□□ 1.956e-46■□□□□ 9.8
YBX3P16989 CMBL-207ENST00000514202 593 ntTSL 216.32■□□□□ 0.23e-10■□□□□ 9.8
YBX3P16989 SRP68-203ENST00000542536 1714 ntTSL 212.59□□□□□ -0.391e-6■□□□□ 9.8
YBX3P16989 SRP68-212ENST00000602720 2037 ntTSL 2 BASIC12.45□□□□□ -0.421e-6■□□□□ 9.8
YBX3P16989 C2orf88-201ENST00000340623 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.292e-7■□□□□ 9.8
YBX3P16989 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.742e-7■□□□□ 9.8
YBX3P16989 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC15.12■□□□□ 0.018e-15■□□□□ 9.8
YBX3P16989 UBB-206ENST00000577958 376 ntTSL 220.77■□□□□ 0.921e-36■□□□□ 9.8
YBX3P16989 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC22.61■■□□□ 1.212e-9■□□□□ 9.8
YBX3P16989 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.212e-9■□□□□ 9.8
YBX3P16989 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.05□□□□□ -1.62e-9■□□□□ 9.8
YBX3P16989 HEBP2-203ENST00000453452 512 ntTSL 39.86□□□□□ -0.834e-8■□□□□ 9.8
YBX3P16989 AP2B1-206ENST00000590538 568 ntTSL 411.26□□□□□ -0.612e-9■□□□□ 9.8
YBX3P16989 AP2B1-208ENST00000591610 559 ntTSL 410.94□□□□□ -0.662e-9■□□□□ 9.8
YBX3P16989 AP2B1-210ENST00000593014 577 ntTSL 48.33□□□□□ -1.082e-9■□□□□ 9.8
YBX3P16989 AP2B1-204ENST00000589774 552 ntTSL 47.39□□□□□ -1.232e-9■□□□□ 9.8
YBX3P16989 DDX41-209ENST00000508279 776 ntTSL 512.32□□□□□ -0.442e-6■□□□□ 9.8
YBX3P16989 HK1-214ENST00000483077 750 ntTSL 36.75□□□□□ -1.331e-9■□□□□ 9.8
YBX3P16989 PFAS-209ENST00000584044 557 ntTSL 421.24■□□□□ 0.993e-6■□□□□ 9.8
YBX3P16989 PFAS-210ENST00000585183 581 ntTSL 315.04■□□□□ -03e-6■□□□□ 9.8
YBX3P16989 PFAS-206ENST00000581242 553 ntTSL 415.04■□□□□ -03e-6■□□□□ 9.8
YBX3P16989 PHGDH-214ENST00000641314 1558 nt20.88■□□□□ 0.934e-7■□□□□ 9.8
YBX3P16989 PHGDH-224ENST00000641711 712 nt12.61□□□□□ -0.394e-7■□□□□ 9.8
YBX3P16989 CALR-203ENST00000586803 667 ntTSL 217.47■□□□□ 0.393e-39■□□□□ 9.8
YBX3P16989 RB1CC1-208ENST00000521611 528 ntTSL 531.66■■■□□ 2.665e-11■□□□□ 9.7
YBX3P16989 SERPINH1-211ENST00000529643 660 ntTSL 327.08■■□□□ 1.931e-7■□□□□ 9.7
YBX3P16989 SERPINH1-210ENST00000528990 587 ntTSL 323.13■■□□□ 1.291e-7■□□□□ 9.7
YBX3P16989 INCENP-206ENST00000533896 570 ntTSL 420.37■□□□□ 0.851e-7■□□□□ 9.7
YBX3P16989 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.04■□□□□ 0.641e-7■□□□□ 9.7
YBX3P16989 LRRFIP2-204ENST00000416425 961 ntTSL 317.96■□□□□ 0.471e-7■□□□□ 9.7
YBX3P16989 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.18■□□□□ 0.341e-7■□□□□ 9.7
YBX3P16989 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.175e-11■□□□□ 9.7
YBX3P16989 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.165e-11■□□□□ 9.7
YBX3P16989 SERPINH1-203ENST00000525492 529 ntTSL 415.58■□□□□ 0.081e-7■□□□□ 9.7
YBX3P16989 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.081e-7■□□□□ 9.7
YBX3P16989 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.131e-7■□□□□ 9.7
YBX3P16989 INTS6-207ENST00000469430 3767 ntTSL 213.88□□□□□ -0.191e-7■□□□□ 9.7
YBX3P16989 INTS6-215ENST00000490542 2307 ntTSL 5 BASIC10.81□□□□□ -0.681e-7■□□□□ 9.7
YBX3P16989 LRRFIP2-203ENST00000396428 1791 ntTSL 2 BASIC10.72□□□□□ -0.691e-7■□□□□ 9.7
YBX3P16989 ANP32BP1-201ENST00000564205 1297 ntBASIC10.2□□□□□ -0.781e-7■□□□□ 9.7
YBX3P16989 LRRFIP2-214ENST00000481682 561 ntTSL 410.02□□□□□ -0.811e-7■□□□□ 9.7
YBX3P16989 CA1-207ENST00000519129 491 ntTSL 59.84□□□□□ -0.831e-7■□□□□ 9.7
YBX3P16989 ANP32BP1-202ENST00000568553 737 ntBASIC9.13□□□□□ -0.951e-7■□□□□ 9.7
YBX3P16989 GLUD1-202ENST00000465164 503 ntTSL 28.34□□□□□ -1.071e-7■□□□□ 9.7
YBX3P16989 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC7.91□□□□□ -1.141e-7■□□□□ 9.7
YBX3P16989 POT1-210ENST00000487564 368 ntTSL 27.84□□□□□ -1.152e-7■□□□□ 9.7
YBX3P16989 ZCRB1-203ENST00000551102 541 ntTSL 47.55□□□□□ -1.21e-7■□□□□ 9.7
YBX3P16989 POT1-203ENST00000429326 579 ntTSL 57.34□□□□□ -1.232e-7■□□□□ 9.7
YBX3P16989 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC7.13□□□□□ -1.271e-7■□□□□ 9.7
YBX3P16989 INTS6-219ENST00000493153 572 ntTSL 37.09□□□□□ -1.271e-7■□□□□ 9.7
YBX3P16989 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.76□□□□□ -1.491e-7■□□□□ 9.7
YBX3P16989 INTS6-204ENST00000460868 704 ntTSL 35.45□□□□□ -1.541e-7■□□□□ 9.7
YBX3P16989 TMEM30A-204ENST00000518161 445 ntTSL 45.31□□□□□ -1.565e-11■□□□□ 9.7
YBX3P16989 INTS6-211ENST00000483746 483 ntTSL 35.05□□□□□ -1.61e-7■□□□□ 9.7
YBX3P16989 INTS6-210ENST00000483441 2969 ntTSL 22.81□□□□□ -1.961e-7■□□□□ 9.7
YBX3P16989 POLR1D-216ENST00000636618 100 ntTSL 52.55□□□□□ -25e-11■□□□□ 9.7
YBX3P16989 LBH-203ENST00000404397 543 ntTSL 4 BASIC23.24■■□□□ 1.311e-6■□□□□ 9.7
YBX3P16989 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.091e-6■□□□□ 9.7
YBX3P16989 CD53-204ENST00000476408 756 ntTSL 57.6□□□□□ -1.196e-9■□□□□ 9.7
YBX3P16989 CD53-202ENST00000464329 416 ntTSL 26.99□□□□□ -1.296e-9■□□□□ 9.7
YBX3P16989 CD53-205ENST00000497404 917 ntTSL 56.92□□□□□ -1.36e-9■□□□□ 9.7
YBX3P16989 CD81-205ENST00000475945 606 ntTSL 224.56■■□□□ 1.522e-9■□□□□ 9.7
YBX3P16989 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.044e-7■□□□□ 9.7
YBX3P16989 DDR1-226ENST00000376569 3783 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.324e-7■□□□□ 9.7
YBX3P16989 DDR1-224ENST00000376567 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.364e-7■□□□□ 9.7
YBX3P16989 DDR1-238ENST00000446312 3202 ntTSL 5 BASIC12.67□□□□□ -0.384e-7■□□□□ 9.7
YBX3P16989 DDR1-223ENST00000324771 4148 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.454e-7■□□□□ 9.7
YBX3P16989 DDR1-227ENST00000376570 3820 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.474e-7■□□□□ 9.7
YBX3P16989 USP24-201ENST00000294383 10549 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.513e-7■□□□□ 9.7
Retrieved 100 of 29,075 protein–RNA pairs in 235.6 ms