RNA–Protein interactions for RNA: ENST00000508279.5

DDX41-209, Transcript of DEAD-box helicase 41, humanhuman

TSL 5

Gene DDX41, Length 776 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-209ENST00000508279 NISCHQ9Y2I1 1504 aa22.86■■□□□ 1.25
DDX41-209ENST00000508279 CCDC180Q9P1Z9 1646 aa20.38■□□□□ 0.85
DDX41-209ENST00000508279 ABCC9O60706 1549 aa20.14■□□□□ 0.81
DDX41-209ENST00000508279 DCAF8L2P0C7V8 631 aa19.33■□□□□ 0.68
DDX41-209ENST00000508279 RB1CC1Q8TDY2 1594 aa19.26■□□□□ 0.67
DDX41-209ENST00000508279 NACADO15069 1562 aa19.17■□□□□ 0.66
DDX41-209ENST00000508279 ZCCHC6Q5VYS8 1495 aaKnown RBP19■□□□□ 0.63
DDX41-209ENST00000508279 MYO15BQ96JP2 1530 aa18.93■□□□□ 0.62
DDX41-209ENST00000508279 UNC13AQ9UPW8 1703 aa18.89■□□□□ 0.61
DDX41-209ENST00000508279 DCAF1Q9Y4B6 1507 aa18.83■□□□□ 0.6
DDX41-209ENST00000508279 PABPN1Q86U42 306 aaKnown RBP eCLIP18.82■□□□□ 0.67e-7■■■■□ 21.3
DDX41-209ENST00000508279 SCRIBQ14160 1630 aa18.68■□□□□ 0.58
DDX41-209ENST00000508279 BICRAQ9NZM4 1560 aa18.66■□□□□ 0.58
DDX41-209ENST00000508279 DNAJC5BQ9UF47 199 aa18.55■□□□□ 0.56
DDX41-209ENST00000508279 SHROOM4Q9ULL8 1493 aa18.36■□□□□ 0.53
DDX41-209ENST00000508279 EIF4G1Q04637 1599 aaKnown RBP18.2■□□□□ 0.5
DDX41-209ENST00000508279 CC2D2AQ9P2K1 1620 aa18.19■□□□□ 0.5
DDX41-209ENST00000508279 CECR2Q9BXF3 1484 aa18.07■□□□□ 0.48
DDX41-209ENST00000508279 SMARCA4P51532 1647 aa17.8■□□□□ 0.44
DDX41-209ENST00000508279 AEBP2Q6ZN18 517 aaPredicted RBP17.79■□□□□ 0.44
DDX41-209ENST00000508279 BAZ1AQ9NRL2 1556 aaPredicted RBP17.74■□□□□ 0.43
DDX41-209ENST00000508279 ATAD2BQ9ULI0 1458 aa17.69■□□□□ 0.42
DDX41-209ENST00000508279 SMARCA2P51531 1590 aa17.68■□□□□ 0.42
DDX41-209ENST00000508279 NCAPD3P42695 1498 aa17.67■□□□□ 0.42
DDX41-209ENST00000508279 MROH2BQ7Z745 1585 aa17.65■□□□□ 0.42
DDX41-209ENST00000508279 HMGXB3Q12766 1538 aa17.58■□□□□ 0.41
DDX41-209ENST00000508279 BAZ1BQ9UIG0 1483 aaKnown RBP17.58■□□□□ 0.41
DDX41-209ENST00000508279 PEG3Q9GZU2 1588 aa17.54■□□□□ 0.4
DDX41-209ENST00000508279 WIZO95785 1651 aa17.5■□□□□ 0.39
DDX41-209ENST00000508279 NESP48681 1621 aa17.38■□□□□ 0.37
DDX41-209ENST00000508279 RSF1Q96T23 1441 aaPredicted RBP17.38■□□□□ 0.37
DDX41-209ENST00000508279 ERCC6Q03468 1493 aa17.37■□□□□ 0.37
DDX41-209ENST00000508279 LAMC3Q9Y6N6 1575 aa17.26■□□□□ 0.35
DDX41-209ENST00000508279 TOP2AP11388 1531 aaKnown RBP17.24■□□□□ 0.35
DDX41-209ENST00000508279 KIF21AQ7Z4S6 1674 aa17.2■□□□□ 0.34
DDX41-209ENST00000508279 CADPSQ9ULU8 1353 aa17.18■□□□□ 0.34
DDX41-209ENST00000508279 PDS5BQ9NTI5 1447 aa17.16■□□□□ 0.34
DDX41-209ENST00000508279 CUX2O14529 1486 aa17.14■□□□□ 0.33
DDX41-209ENST00000508279 THOC2Q8NI27 1593 aaKnown RBP17.11■□□□□ 0.33
DDX41-209ENST00000508279 CCDC88BA6NC98 1476 aa17.05■□□□□ 0.32
DDX41-209ENST00000508279 CFTRP13569 1480 aa17.04■□□□□ 0.32
DDX41-209ENST00000508279 FANCD2Q9BXW9 1451 aa17.02■□□□□ 0.32
DDX41-209ENST00000508279 CEP164Q9UPV0 1460 aa17.01■□□□□ 0.31
DDX41-209ENST00000508279 MRC2Q9UBG0 1479 aa16.99■□□□□ 0.31
DDX41-209ENST00000508279 SUPT5HO00267 1087 aaKnown RBP16.99■□□□□ 0.31
DDX41-209ENST00000508279 PRDM2Q13029 1718 aa16.99■□□□□ 0.31
DDX41-209ENST00000508279 WDR62O43379 1518 aa16.92■□□□□ 0.3
DDX41-209ENST00000508279 URB2Q14146 1524 aaKnown RBP16.85■□□□□ 0.29
DDX41-209ENST00000508279 CHIC1Q5VXU3 224 aa16.78■□□□□ 0.28
DDX41-209ENST00000508279 DNAJC5Q9H3Z4 198 aa16.77■□□□□ 0.28
DDX41-209ENST00000508279 TOPBP1Q92547 1522 aa16.73■□□□□ 0.27
DDX41-209ENST00000508279 DNMBPQ6XZF7 1577 aa16.69■□□□□ 0.26
DDX41-209ENST00000508279 ABCC8Q09428 1581 aa16.68■□□□□ 0.26
DDX41-209ENST00000508279 IFT140Q96RY7 1462 aa16.63■□□□□ 0.25
DDX41-209ENST00000508279 ZNF608Q9ULD9 1512 aaPredicted RBP16.6■□□□□ 0.25
DDX41-209ENST00000508279 POLA1P09884 1462 aaPredicted RBP16.57■□□□□ 0.24
DDX41-209ENST00000508279 CUX1P39880 1505 aa16.56■□□□□ 0.24
DDX41-209ENST00000508279 RAD54L2Q9Y4B4 1467 aa16.54■□□□□ 0.24
DDX41-209ENST00000508279 TARBP1Q13395 1621 aaKnown RBP16.54■□□□□ 0.24
DDX41-209ENST00000508279 EIF4G3O43432 1585 aaKnown RBP16.54■□□□□ 0.24
DDX41-209ENST00000508279 FGD5Q6ZNL6 1462 aa16.54■□□□□ 0.24
DDX41-209ENST00000508279 SOGA1O94964 1423 aa16.52■□□□□ 0.23
DDX41-209ENST00000508279 AQRO60306 1485 aaKnown RBP eCLIP16.5■□□□□ 0.235e-8■■■■■ 87.7
DDX41-209ENST00000508279 OSCARQ8IYS5 282 aa16.46■□□□□ 0.23
DDX41-209ENST00000508279 TDRD9Q8NDG6 1382 aaKnown RBP16.46■□□□□ 0.23
DDX41-209ENST00000508279 FBLN2P98095 1184 aa16.41■□□□□ 0.22
DDX41-209ENST00000508279 WRNQ14191 1432 aaPredicted RBP eCLIP16.41■□□□□ 0.22
DDX41-209ENST00000508279 CHD1O14646 1710 aa16.41■□□□□ 0.22
DDX41-209ENST00000508279 SYNJ1O43426 1573 aa16.39■□□□□ 0.21
DDX41-209ENST00000508279 WDR97A6NE52 1622 aa16.39■□□□□ 0.21
DDX41-209ENST00000508279 BIVM-ERCC5R4GMW8 1640 aa16.38■□□□□ 0.21
DDX41-209ENST00000508279 TOP2BQ02880 1626 aa16.37■□□□□ 0.21
DDX41-209ENST00000508279 PBRM1Q86U86 1689 aa16.35■□□□□ 0.21
DDX41-209ENST00000508279 SNAPC4Q5SXM2 1469 aa16.35■□□□□ 0.21
DDX41-209ENST00000508279 GAPVD1Q14C86 1478 aa16.33■□□□□ 0.2
DDX41-209ENST00000508279 ABCA10Q8WWZ4 1543 aa16.33■□□□□ 0.2
DDX41-209ENST00000508279 GRIN2BQ13224 1484 aa16.32■□□□□ 0.2
DDX41-209ENST00000508279 TRIM41Q8WV44 630 aa16.31■□□□□ 0.2
DDX41-209ENST00000508279 CHMP7Q8WUX9 453 aaPredicted RBP16.29■□□□□ 0.2
DDX41-209ENST00000508279 ABCA5Q8WWZ7 1642 aa16.29■□□□□ 0.2
DDX41-209ENST00000508279 MAGI1Q96QZ7 1491 aaPredicted RBP16.27■□□□□ 0.19
DDX41-209ENST00000508279 RIMBP3CA6NJZ7 1639 aa16.23■□□□□ 0.19
DDX41-209ENST00000508279 RIMBP3BA6NNM3 1639 aa16.23■□□□□ 0.19
DDX41-209ENST00000508279 RIMBP3Q9UFD9 1639 aa16.23■□□□□ 0.19
DDX41-209ENST00000508279 SYNJ2O15056 1496 aa16.22■□□□□ 0.19
DDX41-209ENST00000508279 ARHGEF11O15085 1522 aa16.19■□□□□ 0.18
DDX41-209ENST00000508279 ADAMTS12P58397 1594 aa16.16■□□□□ 0.18
DDX41-209ENST00000508279 ERICH3Q5RHP9 1530 aa16.13■□□□□ 0.17
DDX41-209ENST00000508279 CLASP1Q7Z460 1538 aa16.13■□□□□ 0.17
DDX41-209ENST00000508279 GRIN2AQ12879 1464 aa16.11■□□□□ 0.17
DDX41-209ENST00000508279 FHAD1B1AJZ9 1412 aa16.11■□□□□ 0.17
DDX41-209ENST00000508279 CYB5RLQ6IPT4 315 aa16.1■□□□□ 0.17
DDX41-209ENST00000508279 KIF27Q86VH2 1401 aa16.08■□□□□ 0.16
DDX41-209ENST00000508279 CEP170Q5SW79 1584 aa16.06■□□□□ 0.16
DDX41-209ENST00000508279 ARAP1Q96P48 1450 aa16.04■□□□□ 0.16
DDX41-209ENST00000508279 NUP160Q12769 1436 aa16.01■□□□□ 0.15
DDX41-209ENST00000508279 IGF1RP08069 1367 aa16■□□□□ 0.15
DDX41-209ENST00000508279 CUL7Q14999 1698 aa15.99■□□□□ 0.15
DDX41-209ENST00000508279 ERCC6L2Q5T890 1561 aa15.96■□□□□ 0.14
DDX41-209ENST00000508279 CARMIL1Q5VZK9 1371 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms