RNA–Protein interactions for RNA: ENST00000376569.7

DDR1-226, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene DDR1, Length 3,783 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-226ENST00000376569 NISCHQ9Y2I1 1504 aa24.34■■□□□ 1.49
DDR1-226ENST00000376569 DCAF8L2P0C7V8 631 aa22.83■■□□□ 1.25
DDR1-226ENST00000376569 SHROOM4Q9ULL8 1493 aa22.57■■□□□ 1.2
DDR1-226ENST00000376569 SUPT5HO00267 1087 aaKnown RBP22.36■■□□□ 1.17
DDR1-226ENST00000376569 EHMT2Q96KQ7 1210 aa21.38■■□□□ 1.01
DDR1-226ENST00000376569 FAM9AQ8IZU1 332 aaPredicted RBP20.96■□□□□ 0.95
DDR1-226ENST00000376569 PCGF6Q9BYE7 350 aa20.88■□□□□ 0.93
DDR1-226ENST00000376569 CHIC1Q5VXU3 224 aa20.74■□□□□ 0.91
DDR1-226ENST00000376569 LOC105371045A0A1W2PR82 267 aa20.73■□□□□ 0.91
DDR1-226ENST00000376569 TTBK1Q5TCY1 1321 aaPredicted RBP20.55■□□□□ 0.88
DDR1-226ENST00000376569 PPARGC1BQ86YN6 1023 aaKnown RBP20.47■□□□□ 0.87
DDR1-226ENST00000376569 TRIM41Q8WV44 630 aa20.44■□□□□ 0.86
DDR1-226ENST00000376569 ZCCHC6Q5VYS8 1495 aaKnown RBP20.34■□□□□ 0.85
DDR1-226ENST00000376569 ABCC9O60706 1549 aa20.29■□□□□ 0.84
DDR1-226ENST00000376569 RANGAP1P46060 587 aaPredicted RBP20.18■□□□□ 0.82
DDR1-226ENST00000376569 MYO15BQ96JP2 1530 aa20.13■□□□□ 0.81
DDR1-226ENST00000376569 CCDC180Q9P1Z9 1646 aa20.1■□□□□ 0.81
DDR1-226ENST00000376569 HRCP23327 699 aa20.08■□□□□ 0.8
DDR1-226ENST00000376569 PABPN1Q86U42 306 aaKnown RBP eCLIP19.98■□□□□ 0.79
DDR1-226ENST00000376569 SCRIBQ14160 1630 aa19.9■□□□□ 0.78
DDR1-226ENST00000376569 TRIM26Q12899 539 aaPredicted RBP19.85■□□□□ 0.77
DDR1-226ENST00000376569 UBTFP17480 764 aaKnown RBP19.83■□□□□ 0.77
DDR1-226ENST00000376569 CCER1Q8TC90 406 aaPredicted RBP19.72■□□□□ 0.75
DDR1-226ENST00000376569 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.64■□□□□ 0.74
DDR1-226ENST00000376569 RSF1Q96T23 1441 aaPredicted RBP19.56■□□□□ 0.72
DDR1-226ENST00000376569 APLP2Q06481 763 aa19.52■□□□□ 0.72
DDR1-226ENST00000376569 CECR2Q9BXF3 1484 aa19.46■□□□□ 0.71
DDR1-226ENST00000376569 DCAF1Q9Y4B6 1507 aa19.45■□□□□ 0.7
DDR1-226ENST00000376569 HNRNPUL2Q1KMD3 747 aaKnown RBP19.43■□□□□ 0.7
DDR1-226ENST00000376569 ATP1B4Q9UN42 357 aaPredicted RBP19.38■□□□□ 0.69
DDR1-226ENST00000376569 ZEB1P37275 1124 aaPredicted RBP19.36■□□□□ 0.69
DDR1-226ENST00000376569 YTHDC1Q96MU7 727 aaKnown RBP19.31■□□□□ 0.68
DDR1-226ENST00000376569 ITGAEP38570 1179 aa19.29■□□□□ 0.68
DDR1-226ENST00000376569 RB1CC1Q8TDY2 1594 aa19.24■□□□□ 0.67
DDR1-226ENST00000376569 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
DDR1-226ENST00000376569 CSRNP3Q8WYN3 585 aa19.14■□□□□ 0.65
DDR1-226ENST00000376569 WIZO95785 1651 aa18.97■□□□□ 0.63
DDR1-226ENST00000376569 DIEXFQ68CQ4 756 aaKnown RBP18.96■□□□□ 0.63
DDR1-226ENST00000376569 NACADO15069 1562 aa18.94■□□□□ 0.62
DDR1-226ENST00000376569 P3H3Q8IVL6 736 aa18.92■□□□□ 0.62
DDR1-226ENST00000376569 ABCC8Q09428 1581 aa18.92■□□□□ 0.62
DDR1-226ENST00000376569 SOGA1O94964 1423 aa18.91■□□□□ 0.62
DDR1-226ENST00000376569 CCDC88BA6NC98 1476 aa18.84■□□□□ 0.61
DDR1-226ENST00000376569 CENPBP07199 599 aaPredicted RBP18.84■□□□□ 0.61
DDR1-226ENST00000376569 CEP162Q5TB80 1403 aa18.76■□□□□ 0.59
DDR1-226ENST00000376569 BAZ1AQ9NRL2 1556 aaPredicted RBP18.72■□□□□ 0.59
DDR1-226ENST00000376569 RUSC2Q8N2Y8 1516 aa18.72■□□□□ 0.59
DDR1-226ENST00000376569 FAM50AQ14320 339 aaKnown RBP18.72■□□□□ 0.59
DDR1-226ENST00000376569 ARID3CA6NKF2 412 aa18.71■□□□□ 0.59
DDR1-226ENST00000376569 NEUROD1Q13562 356 aa18.67■□□□□ 0.58
DDR1-226ENST00000376569 GTF3C3Q9Y5Q9 886 aa18.67■□□□□ 0.58
DDR1-226ENST00000376569 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
DDR1-226ENST00000376569 CNGB1Q14028 1251 aaPredicted RBP18.62■□□□□ 0.57
DDR1-226ENST00000376569 SCAF1Q9H7N4 1312 aaKnown RBP18.62■□□□□ 0.57
DDR1-226ENST00000376569 ZNF316A6NFI3 1004 aaPredicted RBP18.61■□□□□ 0.57
DDR1-226ENST00000376569 CLIP1P30622 1438 aa18.57■□□□□ 0.56
DDR1-226ENST00000376569 BAZ1BQ9UIG0 1483 aaKnown RBP18.53■□□□□ 0.56
DDR1-226ENST00000376569 TNIKQ9UKE5 1360 aa18.5■□□□□ 0.55
DDR1-226ENST00000376569 ACIN1Q9UKV3 1341 aaKnown RBP18.5■□□□□ 0.55
DDR1-226ENST00000376569 MIER1Q8N108 512 aa18.47■□□□□ 0.55
DDR1-226ENST00000376569 HIRIP3Q9BW71 556 aaPredicted RBP18.47■□□□□ 0.55
DDR1-226ENST00000376569 GOLGA3Q08378 1498 aa18.45■□□□□ 0.54
DDR1-226ENST00000376569 KANK4Q5T7N3 995 aaPredicted RBP18.42■□□□□ 0.54
DDR1-226ENST00000376569 SMARCA4P51532 1647 aa18.42■□□□□ 0.54
DDR1-226ENST00000376569 TOP2AP11388 1531 aaKnown RBP18.41■□□□□ 0.54
DDR1-226ENST00000376569 PELP1Q8IZL8 1130 aaKnown RBP18.37■□□□□ 0.53
DDR1-226ENST00000376569 POLR3GLQ9BT43 218 aa18.37■□□□□ 0.53
DDR1-226ENST00000376569 FBLN2P98095 1184 aa18.34■□□□□ 0.53
DDR1-226ENST00000376569 SMARCA2P51531 1590 aa18.33■□□□□ 0.53
DDR1-226ENST00000376569 BCANQ96GW7 911 aa18.33■□□□□ 0.52
DDR1-226ENST00000376569 RAPGEF2Q9Y4G8 1499 aa18.3■□□□□ 0.52
DDR1-226ENST00000376569 CEP164Q9UPV0 1460 aa18.29■□□□□ 0.52
DDR1-226ENST00000376569 TRIM52Q96A61 297 aa18.29■□□□□ 0.52
DDR1-226ENST00000376569 EEA1Q15075 1411 aa18.28■□□□□ 0.52
DDR1-226ENST00000376569 ATAD2BQ9ULI0 1458 aa18.28■□□□□ 0.52
DDR1-226ENST00000376569 CHIC2Q9UKJ5 165 aa18.27■□□□□ 0.52
DDR1-226ENST00000376569 EIF4G1Q04637 1599 aaKnown RBP18.25■□□□□ 0.51
DDR1-226ENST00000376569 DDX10Q13206 875 aaKnown RBP18.23■□□□□ 0.51
DDR1-226ENST00000376569 SIN3AQ96ST3 1273 aa18.22■□□□□ 0.51
DDR1-226ENST00000376569 ZNF326Q5BKZ1 582 aaKnown RBP18.15■□□□□ 0.5
DDR1-226ENST00000376569 KIF27Q86VH2 1401 aa18.15■□□□□ 0.5
DDR1-226ENST00000376569 VPS8Q8N3P4 1428 aa18.13■□□□□ 0.49
DDR1-226ENST00000376569 CUX2O14529 1486 aa18.13■□□□□ 0.49
DDR1-226ENST00000376569 ZNF777Q9ULD5 760 aaPredicted RBP18.1■□□□□ 0.49
DDR1-226ENST00000376569 RRP7BPQ9NSQ0 103 aa18.08■□□□□ 0.49
DDR1-226ENST00000376569 SYNJ1O43426 1573 aa18.07■□□□□ 0.48
DDR1-226ENST00000376569 SENP3-EIF4A1A0A087X0R7 540 aa18.06■□□□□ 0.48
DDR1-226ENST00000376569 NEFLP07196 543 aa18.04■□□□□ 0.48
DDR1-226ENST00000376569 CARMIL1Q5VZK9 1371 aa18.04■□□□□ 0.48
DDR1-226ENST00000376569 UNC13AQ9UPW8 1703 aa18.02■□□□□ 0.48
DDR1-226ENST00000376569 BICRAQ9NZM4 1560 aa18.01■□□□□ 0.47
DDR1-226ENST00000376569 TDRD9Q8NDG6 1382 aaKnown RBP18.01■□□□□ 0.47
DDR1-226ENST00000376569 DNAJC5BQ9UF47 199 aa18■□□□□ 0.47
DDR1-226ENST00000376569 MTUS2Q5JR59 1369 aa17.97■□□□□ 0.47
DDR1-226ENST00000376569 KCNH8Q96L42 1107 aa17.97■□□□□ 0.47
DDR1-226ENST00000376569 CCNB3Q8WWL7 1395 aa17.96■□□□□ 0.47
DDR1-226ENST00000376569 ANP32CO43423 234 aa17.93■□□□□ 0.46
DDR1-226ENST00000376569 MYT1LQ9UL68 1186 aa17.92■□□□□ 0.46
DDR1-226ENST00000376569 TONSLQ96HA7 1378 aa17.89■□□□□ 0.45
DDR1-226ENST00000376569 FOXD1Q16676 465 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms