RNA–Protein interactions for RNA: ENST00000446312.5

DDR1-238, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5 BASIC

Gene DDR1, Length 3,202 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-238	ENST00000446312	NISCH	Q9Y2I1	1504 aa		24.48	■■□□□ 1.51
DDR1-238	ENST00000446312	SHROOM4	Q9ULL8	1493 aa		22.12	■■□□□ 1.13
DDR1-238	ENST00000446312	SUPT5H	O00267	1087 aa	Known RBP	21.89	■■□□□ 1.09
DDR1-238	ENST00000446312	DCAF8L2	P0C7V8	631 aa		21.51	■■□□□ 1.03
DDR1-238	ENST00000446312	PCGF6	Q9BYE7	350 aa		21.07	■□□□□ 0.96
DDR1-238	ENST00000446312	PPARGC1B	Q86YN6	1023 aa	Known RBP	20.99	■□□□□ 0.95
DDR1-238	ENST00000446312	CHIC1	Q5VXU3	224 aa		20.82	■□□□□ 0.92
DDR1-238	ENST00000446312	EHMT2	Q96KQ7	1210 aa		20.8	■□□□□ 0.92
DDR1-238	ENST00000446312	CCDC180	Q9P1Z9	1646 aa		20.79	■□□□□ 0.92
DDR1-238	ENST00000446312	MYO15B	Q96JP2	1530 aa		20.77	■□□□□ 0.92
DDR1-238	ENST00000446312	LOC105371045	A0A1W2PR82	267 aa		20.77	■□□□□ 0.92
DDR1-238	ENST00000446312	HRC	P23327	699 aa		20.75	■□□□□ 0.91
DDR1-238	ENST00000446312	ZCCHC6	Q5VYS8	1495 aa	Known RBP	20.68	■□□□□ 0.9
DDR1-238	ENST00000446312	PELP1	Q8IZL8	1130 aa	Known RBP	20.61	■□□□□ 0.89
DDR1-238	ENST00000446312	FAM9A	Q8IZU1	332 aa	Predicted RBP	20.45	■□□□□ 0.86
DDR1-238	ENST00000446312	TTBK1	Q5TCY1	1321 aa	Predicted RBP	20.09	■□□□□ 0.81
DDR1-238	ENST00000446312	MYT1	Q01538	1121 aa		20.06	■□□□□ 0.8
DDR1-238	ENST00000446312	DCAF1	Q9Y4B6	1507 aa		20.01	■□□□□ 0.79
DDR1-238	ENST00000446312	TRIM26	Q12899	539 aa	Predicted RBP	19.98	■□□□□ 0.79
DDR1-238	ENST00000446312	TRIM41	Q8WV44	630 aa		19.94	■□□□□ 0.78
DDR1-238	ENST00000446312	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	19.71	■□□□□ 0.75
DDR1-238	ENST00000446312	SCAF1	Q9H7N4	1312 aa	Known RBP	19.62	■□□□□ 0.73
DDR1-238	ENST00000446312	SCRIB	Q14160	1630 aa		19.58	■□□□□ 0.72
DDR1-238	ENST00000446312	CCER1	Q8TC90	406 aa	Predicted RBP	19.54	■□□□□ 0.72
DDR1-238	ENST00000446312	ABCC9	O60706	1549 aa		19.49	■□□□□ 0.71
DDR1-238	ENST00000446312	ZEB1	P37275	1124 aa	Predicted RBP	19.42	■□□□□ 0.7
DDR1-238	ENST00000446312	RANGAP1	P46060	587 aa	Predicted RBP	19.38	■□□□□ 0.69
DDR1-238	ENST00000446312	YTHDC1	Q96MU7	727 aa	Known RBP	19.38	■□□□□ 0.69
DDR1-238	ENST00000446312	RSF1	Q96T23	1441 aa	Predicted RBP	19.38	■□□□□ 0.69
DDR1-238	ENST00000446312	NEUROD1	Q13562	356 aa		19.31	■□□□□ 0.68
DDR1-238	ENST00000446312	RB1CC1	Q8TDY2	1594 aa		19.27	■□□□□ 0.67
DDR1-238	ENST00000446312	NACAD	O15069	1562 aa		19.25	■□□□□ 0.67
DDR1-238	ENST00000446312	GTF3C3	Q9Y5Q9	886 aa		19.21	■□□□□ 0.67
DDR1-238	ENST00000446312	CECR2	Q9BXF3	1484 aa		19.19	■□□□□ 0.66
DDR1-238	ENST00000446312	DIEXF	Q68CQ4	756 aa	Known RBP	19.19	■□□□□ 0.66
DDR1-238	ENST00000446312	UBTF	P17480	764 aa	Known RBP	19.15	■□□□□ 0.66
DDR1-238	ENST00000446312	HNRNPUL2	Q1KMD3	747 aa	Known RBP	19.12	■□□□□ 0.65
DDR1-238	ENST00000446312	ACIN1	Q9UKV3	1341 aa	Known RBP	19.11	■□□□□ 0.65
DDR1-238	ENST00000446312	MROH2B	Q7Z745	1585 aa		19.08	■□□□□ 0.65
DDR1-238	ENST00000446312	WIZ	O95785	1651 aa		18.99	■□□□□ 0.63
DDR1-238	ENST00000446312	CENPB	P07199	599 aa	Predicted RBP	18.94	■□□□□ 0.62
DDR1-238	ENST00000446312	PABPN1	Q86U42	306 aa	Known RBP eCLIP	18.9	■□□□□ 0.62
DDR1-238	ENST00000446312	ABCC8	Q09428	1581 aa		18.83	■□□□□ 0.61
DDR1-238	ENST00000446312	MIER1	Q8N108	512 aa		18.82	■□□□□ 0.6
DDR1-238	ENST00000446312	UNC13A	Q9UPW8	1703 aa		18.81	■□□□□ 0.6
DDR1-238	ENST00000446312	SOGA1	O94964	1423 aa		18.8	■□□□□ 0.6
DDR1-238	ENST00000446312	BCL11A	Q9H165	835 aa		18.79	■□□□□ 0.6
DDR1-238	ENST00000446312	CCDC88B	A6NC98	1476 aa		18.77	■□□□□ 0.6
DDR1-238	ENST00000446312	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	18.77	■□□□□ 0.6
DDR1-238	ENST00000446312	ZNF316	A6NFI3	1004 aa	Predicted RBP	18.76	■□□□□ 0.59
DDR1-238	ENST00000446312	RUSC2	Q8N2Y8	1516 aa		18.73	■□□□□ 0.59
DDR1-238	ENST00000446312	CSRNP3	Q8WYN3	585 aa		18.72	■□□□□ 0.59
DDR1-238	ENST00000446312	ITGAE	P38570	1179 aa		18.71	■□□□□ 0.59
DDR1-238	ENST00000446312	CEP162	Q5TB80	1403 aa		18.71	■□□□□ 0.59
DDR1-238	ENST00000446312	PRKCSH	P14314	528 aa	Predicted RBP	18.7	■□□□□ 0.58
DDR1-238	ENST00000446312	SMARCA4	P51532	1647 aa		18.67	■□□□□ 0.58
DDR1-238	ENST00000446312	EIF4G1	Q04637	1599 aa	Known RBP	18.66	■□□□□ 0.58
DDR1-238	ENST00000446312	APLP2	Q06481	763 aa		18.66	■□□□□ 0.58
DDR1-238	ENST00000446312	TOP2A	P11388	1531 aa	Known RBP	18.6	■□□□□ 0.57
DDR1-238	ENST00000446312	BICRA	Q9NZM4	1560 aa		18.57	■□□□□ 0.56
DDR1-238	ENST00000446312	SMARCA2	P51531	1590 aa		18.54	■□□□□ 0.56
DDR1-238	ENST00000446312	BCAN	Q96GW7	911 aa		18.49	■□□□□ 0.55
DDR1-238	ENST00000446312	TNIK	Q9UKE5	1360 aa		18.41	■□□□□ 0.54
DDR1-238	ENST00000446312	ATP1B4	Q9UN42	357 aa	Predicted RBP	18.39	■□□□□ 0.53
DDR1-238	ENST00000446312	KCNH8	Q96L42	1107 aa		18.38	■□□□□ 0.53
DDR1-238	ENST00000446312	HIRIP3	Q9BW71	556 aa	Predicted RBP	18.37	■□□□□ 0.53
DDR1-238	ENST00000446312	CLIP1	P30622	1438 aa		18.32	■□□□□ 0.52
DDR1-238	ENST00000446312	KANK4	Q5T7N3	995 aa	Predicted RBP	18.31	■□□□□ 0.52
DDR1-238	ENST00000446312	ERICH6	Q7L0X2	663 aa		18.29	■□□□□ 0.52
DDR1-238	ENST00000446312	PEG3	Q9GZU2	1588 aa		18.28	■□□□□ 0.52
DDR1-238	ENST00000446312	WRN	Q14191	1432 aa	Predicted RBP eCLIP	18.27	■□□□□ 0.51
DDR1-238	ENST00000446312	GOLGA3	Q08378	1498 aa		18.25	■□□□□ 0.51
DDR1-238	ENST00000446312	P3H3	Q8IVL6	736 aa		18.23	■□□□□ 0.51
DDR1-238	ENST00000446312	ATAD2B	Q9ULI0	1458 aa		18.22	■□□□□ 0.51
DDR1-238	ENST00000446312	SUPT16H	Q9Y5B9	1047 aa	Known RBP	18.19	■□□□□ 0.5
DDR1-238	ENST00000446312	RAPGEF2	Q9Y4G8	1499 aa		18.18	■□□□□ 0.5
DDR1-238	ENST00000446312	DDX10	Q13206	875 aa	Known RBP	18.15	■□□□□ 0.5
DDR1-238	ENST00000446312	ANP32E	Q9BTT0	268 aa		18.13	■□□□□ 0.49
DDR1-238	ENST00000446312	BAZ1B	Q9UIG0	1483 aa	Known RBP	18.13	■□□□□ 0.49
DDR1-238	ENST00000446312	SYNJ1	O43426	1573 aa		18.13	■□□□□ 0.49
DDR1-238	ENST00000446312	FAM50A	Q14320	339 aa	Known RBP	18.12	■□□□□ 0.49
DDR1-238	ENST00000446312	SIN3A	Q96ST3	1273 aa		18.11	■□□□□ 0.49
DDR1-238	ENST00000446312	TRIM52	Q96A61	297 aa		18.1	■□□□□ 0.49
DDR1-238	ENST00000446312	CNGB1	Q14028	1251 aa	Predicted RBP	18.07	■□□□□ 0.48
DDR1-238	ENST00000446312	FKBP8	Q14318	412 aa		18.06	■□□□□ 0.48
DDR1-238	ENST00000446312	VPS8	Q8N3P4	1428 aa		18.05	■□□□□ 0.48
DDR1-238	ENST00000446312	CEP164	Q9UPV0	1460 aa		18.04	■□□□□ 0.48
DDR1-238	ENST00000446312	EEA1	Q15075	1411 aa		18.04	■□□□□ 0.48
DDR1-238	ENST00000446312	DHX57	Q6P158	1386 aa	Known RBP	18.03	■□□□□ 0.48
DDR1-238	ENST00000446312	IRX6	P78412	446 aa	Predicted RBP	18	■□□□□ 0.47
DDR1-238	ENST00000446312	TSHZ2	Q9NRE2	1034 aa		17.99	■□□□□ 0.47
DDR1-238	ENST00000446312	SENP3-EIF4A1	A0A087X0R7	540 aa		17.94	■□□□□ 0.46
DDR1-238	ENST00000446312	KIF21B	O75037	1637 aa		17.9	■□□□□ 0.46
DDR1-238	ENST00000446312	ARID3C	A6NKF2	412 aa		17.88	■□□□□ 0.45
DDR1-238	ENST00000446312	TOP2B	Q02880	1626 aa		17.85	■□□□□ 0.45
DDR1-238	ENST00000446312	NCAPD3	P42695	1498 aa		17.85	■□□□□ 0.45
DDR1-238	ENST00000446312	HMGXB3	Q12766	1538 aa		17.81	■□□□□ 0.44
DDR1-238	ENST00000446312	ARAP1	Q96P48	1450 aa		17.81	■□□□□ 0.44
DDR1-238	ENST00000446312	RAB3GAP2	Q9H2M9	1393 aa		17.81	■□□□□ 0.44
DDR1-238	ENST00000446312	NEFL	P07196	543 aa		17.8	■□□□□ 0.44

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