RNA–Protein interactions for RNA: ENST00000376568.7

DDR1-225, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene DDR1, Length 3,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-225ENST00000376568 NISCHQ9Y2I1 1504 aa27.03■■□□□ 1.92
DDR1-225ENST00000376568 DCAF8L2P0C7V8 631 aa26.21■■□□□ 1.79
DDR1-225ENST00000376568 SHROOM4Q9ULL8 1493 aa24.77■■□□□ 1.56
DDR1-225ENST00000376568 SUPT5HO00267 1087 aaKnown RBP24.27■■□□□ 1.48
DDR1-225ENST00000376568 ABCC9O60706 1549 aa23.82■■□□□ 1.4
DDR1-225ENST00000376568 EHMT2Q96KQ7 1210 aa23.39■■□□□ 1.34
DDR1-225ENST00000376568 PABPN1Q86U42 306 aaKnown RBP eCLIP23.34■■□□□ 1.33
DDR1-225ENST00000376568 FAM9AQ8IZU1 332 aaPredicted RBP22.84■■□□□ 1.25
DDR1-225ENST00000376568 RANGAP1P46060 587 aaPredicted RBP22.48■■□□□ 1.19
DDR1-225ENST00000376568 CCDC180Q9P1Z9 1646 aa22.4■■□□□ 1.18
DDR1-225ENST00000376568 SCRIBQ14160 1630 aa22.37■■□□□ 1.17
DDR1-225ENST00000376568 ZCCHC6Q5VYS8 1495 aaKnown RBP22.36■■□□□ 1.17
DDR1-225ENST00000376568 TRIM41Q8WV44 630 aa22.26■■□□□ 1.15
DDR1-225ENST00000376568 TTBK1Q5TCY1 1321 aaPredicted RBP22.25■■□□□ 1.15
DDR1-225ENST00000376568 LOC105371045A0A1W2PR82 267 aa21.88■■□□□ 1.09
DDR1-225ENST00000376568 PPARGC1BQ86YN6 1023 aaKnown RBP21.85■■□□□ 1.09
DDR1-225ENST00000376568 CHIC1Q5VXU3 224 aa21.84■■□□□ 1.09
DDR1-225ENST00000376568 RB1CC1Q8TDY2 1594 aa21.82■■□□□ 1.08
DDR1-225ENST00000376568 UBTFP17480 764 aaKnown RBP21.81■■□□□ 1.08
DDR1-225ENST00000376568 ATP1B4Q9UN42 357 aaPredicted RBP21.8■■□□□ 1.08
DDR1-225ENST00000376568 CECR2Q9BXF3 1484 aa21.66■■□□□ 1.06
DDR1-225ENST00000376568 NACADO15069 1562 aa21.65■■□□□ 1.06
DDR1-225ENST00000376568 FBLN2P98095 1184 aa21.46■■□□□ 1.03
DDR1-225ENST00000376568 APLP2Q06481 763 aa21.44■■□□□ 1.02
DDR1-225ENST00000376568 RSF1Q96T23 1441 aaPredicted RBP21.43■■□□□ 1.02
DDR1-225ENST00000376568 PCGF6Q9BYE7 350 aa21.36■■□□□ 1.01
DDR1-225ENST00000376568 DCAF1Q9Y4B6 1507 aa21.26■□□□□ 0.99
DDR1-225ENST00000376568 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.22■□□□□ 0.99
DDR1-225ENST00000376568 HNRNPUL2Q1KMD3 747 aaKnown RBP21.22■□□□□ 0.99
DDR1-225ENST00000376568 ARID3CA6NKF2 412 aa21.21■□□□□ 0.99
DDR1-225ENST00000376568 MROH2BQ7Z745 1585 aa21.2■□□□□ 0.98
DDR1-225ENST00000376568 P3H3Q8IVL6 736 aa21.19■□□□□ 0.98
DDR1-225ENST00000376568 DNAJC5BQ9UF47 199 aa21.16■□□□□ 0.98
DDR1-225ENST00000376568 ITGAEP38570 1179 aa21.09■□□□□ 0.97
DDR1-225ENST00000376568 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.97
DDR1-225ENST00000376568 BAZ1AQ9NRL2 1556 aaPredicted RBP20.93■□□□□ 0.94
DDR1-225ENST00000376568 CSRNP3Q8WYN3 585 aa20.92■□□□□ 0.94
DDR1-225ENST00000376568 WIZO95785 1651 aa20.9■□□□□ 0.94
DDR1-225ENST00000376568 MYO15BQ96JP2 1530 aa20.83■□□□□ 0.93
DDR1-225ENST00000376568 CCDC88BA6NC98 1476 aa20.77■□□□□ 0.92
DDR1-225ENST00000376568 MYT1LQ9UL68 1186 aa20.77■□□□□ 0.91
DDR1-225ENST00000376568 ATAD2BQ9ULI0 1458 aa20.73■□□□□ 0.91
DDR1-225ENST00000376568 ERCC6Q03468 1493 aa20.71■□□□□ 0.91
DDR1-225ENST00000376568 CHMP7Q8WUX9 453 aaPredicted RBP20.63■□□□□ 0.89
DDR1-225ENST00000376568 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
DDR1-225ENST00000376568 CCER1Q8TC90 406 aaPredicted RBP20.62■□□□□ 0.89
DDR1-225ENST00000376568 WRNQ14191 1432 aaPredicted RBP eCLIP20.62■□□□□ 0.89
DDR1-225ENST00000376568 SMARCA4P51532 1647 aa20.58■□□□□ 0.88
DDR1-225ENST00000376568 EIF4G1Q04637 1599 aaKnown RBP20.55■□□□□ 0.88
DDR1-225ENST00000376568 FAM50AQ14320 339 aaKnown RBP20.54■□□□□ 0.88
DDR1-225ENST00000376568 BICRAQ9NZM4 1560 aa20.54■□□□□ 0.88
DDR1-225ENST00000376568 TDRD9Q8NDG6 1382 aaKnown RBP20.54■□□□□ 0.88
DDR1-225ENST00000376568 SOGA1O94964 1423 aa20.52■□□□□ 0.88
DDR1-225ENST00000376568 SMARCA2P51531 1590 aa20.49■□□□□ 0.87
DDR1-225ENST00000376568 NESP48681 1621 aa20.45■□□□□ 0.86
DDR1-225ENST00000376568 CADPSQ9ULU8 1353 aa20.45■□□□□ 0.86
DDR1-225ENST00000376568 ZNF777Q9ULD5 760 aaPredicted RBP20.42■□□□□ 0.86
DDR1-225ENST00000376568 TRIM26Q12899 539 aaPredicted RBP20.41■□□□□ 0.86
DDR1-225ENST00000376568 CC2D2AQ9P2K1 1620 aa20.37■□□□□ 0.85
DDR1-225ENST00000376568 TOP2AP11388 1531 aaKnown RBP20.36■□□□□ 0.85
DDR1-225ENST00000376568 CUX2O14529 1486 aa20.32■□□□□ 0.84
DDR1-225ENST00000376568 KCNH8Q96L42 1107 aa20.28■□□□□ 0.84
DDR1-225ENST00000376568 PDS5BQ9NTI5 1447 aa20.28■□□□□ 0.84
DDR1-225ENST00000376568 RUSC2Q8N2Y8 1516 aa20.27■□□□□ 0.84
DDR1-225ENST00000376568 UNC13AQ9UPW8 1703 aa20.27■□□□□ 0.84
DDR1-225ENST00000376568 PLPPR3Q6T4P5 718 aa20.26■□□□□ 0.83
DDR1-225ENST00000376568 NCAPD3P42695 1498 aa20.24■□□□□ 0.83
DDR1-225ENST00000376568 FANCD2Q9BXW9 1451 aa20.21■□□□□ 0.83
DDR1-225ENST00000376568 KIF27Q86VH2 1401 aa20.2■□□□□ 0.82
DDR1-225ENST00000376568 CNGB1Q14028 1251 aaPredicted RBP20.2■□□□□ 0.82
DDR1-225ENST00000376568 CHIC2Q9UKJ5 165 aa20.17■□□□□ 0.82
DDR1-225ENST00000376568 TRIM52Q96A61 297 aa20.16■□□□□ 0.82
DDR1-225ENST00000376568 RAD54L2Q9Y4B4 1467 aa20.15■□□□□ 0.82
DDR1-225ENST00000376568 CARMIL1Q5VZK9 1371 aa20.14■□□□□ 0.81
DDR1-225ENST00000376568 CLIP1P30622 1438 aa20.1■□□□□ 0.81
DDR1-225ENST00000376568 CEP164Q9UPV0 1460 aa20.1■□□□□ 0.81
DDR1-225ENST00000376568 NEUROD1Q13562 356 aa20.09■□□□□ 0.81
DDR1-225ENST00000376568 NPM1P06748 294 aaKnown RBP eCLIP20.08■□□□□ 0.8
DDR1-225ENST00000376568 SENP3Q9H4L4 574 aaPredicted RBP20.07■□□□□ 0.8
DDR1-225ENST00000376568 POLR3GLQ9BT43 218 aa20.06■□□□□ 0.8
DDR1-225ENST00000376568 CEP162Q5TB80 1403 aa20.03■□□□□ 0.8
DDR1-225ENST00000376568 AQRO60306 1485 aaKnown RBP eCLIP20.03■□□□□ 0.81e-7■■■■■ 41.3
DDR1-225ENST00000376568 ZNF326Q5BKZ1 582 aaKnown RBP19.95■□□□□ 0.78
DDR1-225ENST00000376568 GOLGA3Q08378 1498 aa19.94■□□□□ 0.78
DDR1-225ENST00000376568 FGD5Q6ZNL6 1462 aa19.93■□□□□ 0.78
DDR1-225ENST00000376568 CDK11AQ9UQ88 783 aaPredicted RBP19.93■□□□□ 0.78
DDR1-225ENST00000376568 CYB5RLQ6IPT4 315 aa19.91■□□□□ 0.78
DDR1-225ENST00000376568 MTUS2Q5JR59 1369 aa19.9■□□□□ 0.78
DDR1-225ENST00000376568 TRHP20396 242 aaPredicted RBP19.9■□□□□ 0.78
DDR1-225ENST00000376568 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.9■□□□□ 0.78
DDR1-225ENST00000376568 RAPGEF2Q9Y4G8 1499 aa19.89■□□□□ 0.77
DDR1-225ENST00000376568 CFTRP13569 1480 aa19.88■□□□□ 0.77
DDR1-225ENST00000376568 KANK4Q5T7N3 995 aaPredicted RBP19.87■□□□□ 0.77
DDR1-225ENST00000376568 RRP7BPQ9NSQ0 103 aa19.86■□□□□ 0.77
DDR1-225ENST00000376568 JPH4Q96JJ6 628 aa19.85■□□□□ 0.77
DDR1-225ENST00000376568 PLEKHD1A6NEE1 506 aa19.83■□□□□ 0.77
DDR1-225ENST00000376568 TNIKQ9UKE5 1360 aa19.81■□□□□ 0.76
DDR1-225ENST00000376568 EEA1Q15075 1411 aa19.81■□□□□ 0.76
DDR1-225ENST00000376568 IGF1RP08069 1367 aa19.8■□□□□ 0.76
DDR1-225ENST00000376568 FHOD3Q2V2M9 1422 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms