RNA–Protein interactions for RNA: ENST00000376567.6

DDR1-224, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene DDR1, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-224ENST00000376567 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
DDR1-224ENST00000376567 DCAF8L2P0C7V8 631 aa22.47■■□□□ 1.19
DDR1-224ENST00000376567 SHROOM4Q9ULL8 1493 aa21.98■■□□□ 1.11
DDR1-224ENST00000376567 SUPT5HO00267 1087 aaKnown RBP21.81■■□□□ 1.08
DDR1-224ENST00000376567 EHMT2Q96KQ7 1210 aa20.89■□□□□ 0.93
DDR1-224ENST00000376567 FAM9AQ8IZU1 332 aaPredicted RBP20.47■□□□□ 0.87
DDR1-224ENST00000376567 PCGF6Q9BYE7 350 aa20.24■□□□□ 0.83
DDR1-224ENST00000376567 CHIC1Q5VXU3 224 aa20.08■□□□□ 0.8
DDR1-224ENST00000376567 TTBK1Q5TCY1 1321 aaPredicted RBP20.07■□□□□ 0.8
DDR1-224ENST00000376567 CCDC180Q9P1Z9 1646 aa20.07■□□□□ 0.8
DDR1-224ENST00000376567 LOC105371045A0A1W2PR82 267 aa20.06■□□□□ 0.8
DDR1-224ENST00000376567 TRIM41Q8WV44 630 aa19.98■□□□□ 0.79
DDR1-224ENST00000376567 PPARGC1BQ86YN6 1023 aaKnown RBP19.89■□□□□ 0.77
DDR1-224ENST00000376567 ABCC9O60706 1549 aa19.85■□□□□ 0.77
DDR1-224ENST00000376567 RANGAP1P46060 587 aaPredicted RBP19.78■□□□□ 0.76
DDR1-224ENST00000376567 ZCCHC6Q5VYS8 1495 aaKnown RBP19.68■□□□□ 0.74
DDR1-224ENST00000376567 PABPN1Q86U42 306 aaKnown RBP eCLIP19.57■□□□□ 0.72
DDR1-224ENST00000376567 UBTFP17480 764 aaKnown RBP19.44■□□□□ 0.7
DDR1-224ENST00000376567 HRCP23327 699 aa19.36■□□□□ 0.69
DDR1-224ENST00000376567 SCRIBQ14160 1630 aa19.33■□□□□ 0.68
DDR1-224ENST00000376567 MYO15BQ96JP2 1530 aa19.3■□□□□ 0.68
DDR1-224ENST00000376567 TRIM26Q12899 539 aaPredicted RBP19.27■□□□□ 0.68
DDR1-224ENST00000376567 CCER1Q8TC90 406 aaPredicted RBP19.25■□□□□ 0.67
DDR1-224ENST00000376567 APLP2Q06481 763 aa19.24■□□□□ 0.67
DDR1-224ENST00000376567 DCAF1Q9Y4B6 1507 aa19.12■□□□□ 0.65
DDR1-224ENST00000376567 ATP1B4Q9UN42 357 aaPredicted RBP19.09■□□□□ 0.65
DDR1-224ENST00000376567 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.05■□□□□ 0.64
DDR1-224ENST00000376567 HNRNPUL2Q1KMD3 747 aaKnown RBP18.96■□□□□ 0.63
DDR1-224ENST00000376567 RSF1Q96T23 1441 aaPredicted RBP18.94■□□□□ 0.62
DDR1-224ENST00000376567 NACADO15069 1562 aa18.9■□□□□ 0.62
DDR1-224ENST00000376567 ITGAEP38570 1179 aa18.89■□□□□ 0.61
DDR1-224ENST00000376567 ZEB1P37275 1124 aaPredicted RBP18.88■□□□□ 0.61
DDR1-224ENST00000376567 CECR2Q9BXF3 1484 aa18.84■□□□□ 0.61
DDR1-224ENST00000376567 RB1CC1Q8TDY2 1594 aa18.8■□□□□ 0.6
DDR1-224ENST00000376567 YTHDC1Q96MU7 727 aaKnown RBP18.79■□□□□ 0.6
DDR1-224ENST00000376567 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
DDR1-224ENST00000376567 MROH2BQ7Z745 1585 aa18.53■□□□□ 0.56
DDR1-224ENST00000376567 P3H3Q8IVL6 736 aa18.51■□□□□ 0.55
DDR1-224ENST00000376567 DIEXFQ68CQ4 756 aaKnown RBP18.41■□□□□ 0.54
DDR1-224ENST00000376567 CENPBP07199 599 aaPredicted RBP18.4■□□□□ 0.54
DDR1-224ENST00000376567 ARID3CA6NKF2 412 aa18.34■□□□□ 0.53
DDR1-224ENST00000376567 FAM50AQ14320 339 aaKnown RBP18.34■□□□□ 0.53
DDR1-224ENST00000376567 WIZO95785 1651 aa18.32■□□□□ 0.52
DDR1-224ENST00000376567 SOGA1O94964 1423 aa18.3■□□□□ 0.52
DDR1-224ENST00000376567 ABCC8Q09428 1581 aa18.29■□□□□ 0.52
DDR1-224ENST00000376567 CNGB1Q14028 1251 aaPredicted RBP18.25■□□□□ 0.51
DDR1-224ENST00000376567 NEUROD1Q13562 356 aa18.24■□□□□ 0.51
DDR1-224ENST00000376567 CCDC88BA6NC98 1476 aa18.22■□□□□ 0.51
DDR1-224ENST00000376567 BAZ1AQ9NRL2 1556 aaPredicted RBP18.21■□□□□ 0.51
DDR1-224ENST00000376567 CEP162Q5TB80 1403 aa18.2■□□□□ 0.5
DDR1-224ENST00000376567 WRNQ14191 1432 aaPredicted RBP eCLIP18.17■□□□□ 0.5
DDR1-224ENST00000376567 BAZ1BQ9UIG0 1483 aaKnown RBP18.1■□□□□ 0.49
DDR1-224ENST00000376567 FBLN2P98095 1184 aa18.1■□□□□ 0.49
DDR1-224ENST00000376567 CLIP1P30622 1438 aa18.08■□□□□ 0.48
DDR1-224ENST00000376567 ZNF316A6NFI3 1004 aaPredicted RBP18.07■□□□□ 0.48
DDR1-224ENST00000376567 RUSC2Q8N2Y8 1516 aa18.06■□□□□ 0.48
DDR1-224ENST00000376567 POLR3GLQ9BT43 218 aa18.06■□□□□ 0.48
DDR1-224ENST00000376567 GTF3C3Q9Y5Q9 886 aa18.04■□□□□ 0.48
DDR1-224ENST00000376567 UNC13AQ9UPW8 1703 aa18.03■□□□□ 0.48
DDR1-224ENST00000376567 BICRAQ9NZM4 1560 aa18.02■□□□□ 0.48
DDR1-224ENST00000376567 TNIKQ9UKE5 1360 aa17.96■□□□□ 0.47
DDR1-224ENST00000376567 TRIM52Q96A61 297 aa17.96■□□□□ 0.47
DDR1-224ENST00000376567 GOLGA3Q08378 1498 aa17.95■□□□□ 0.46
DDR1-224ENST00000376567 SMARCA4P51532 1647 aa17.94■□□□□ 0.46
DDR1-224ENST00000376567 HIRIP3Q9BW71 556 aaPredicted RBP17.93■□□□□ 0.46
DDR1-224ENST00000376567 ACIN1Q9UKV3 1341 aaKnown RBP17.86■□□□□ 0.45
DDR1-224ENST00000376567 CHIC2Q9UKJ5 165 aa17.86■□□□□ 0.45
DDR1-224ENST00000376567 KANK4Q5T7N3 995 aaPredicted RBP17.86■□□□□ 0.45
DDR1-224ENST00000376567 TOP2AP11388 1531 aaKnown RBP17.86■□□□□ 0.45
DDR1-224ENST00000376567 MIER1Q8N108 512 aa17.85■□□□□ 0.45
DDR1-224ENST00000376567 SCAF1Q9H7N4 1312 aaKnown RBP17.85■□□□□ 0.45
DDR1-224ENST00000376567 PELP1Q8IZL8 1130 aaKnown RBP17.84■□□□□ 0.45
DDR1-224ENST00000376567 EEA1Q15075 1411 aa17.82■□□□□ 0.44
DDR1-224ENST00000376567 ZNF326Q5BKZ1 582 aaKnown RBP17.82■□□□□ 0.44
DDR1-224ENST00000376567 BCANQ96GW7 911 aa17.82■□□□□ 0.44
DDR1-224ENST00000376567 CEP164Q9UPV0 1460 aa17.8■□□□□ 0.44
DDR1-224ENST00000376567 ZNF777Q9ULD5 760 aaPredicted RBP17.79■□□□□ 0.44
DDR1-224ENST00000376567 MYT1LQ9UL68 1186 aa17.78■□□□□ 0.44
DDR1-224ENST00000376567 ATAD2BQ9ULI0 1458 aa17.78■□□□□ 0.44
DDR1-224ENST00000376567 DDX10Q13206 875 aaKnown RBP17.74■□□□□ 0.43
DDR1-224ENST00000376567 KIF27Q86VH2 1401 aa17.73■□□□□ 0.43
DDR1-224ENST00000376567 RAPGEF2Q9Y4G8 1499 aa17.72■□□□□ 0.43
DDR1-224ENST00000376567 SMARCA2P51531 1590 aa17.72■□□□□ 0.43
DDR1-224ENST00000376567 NEFLP07196 543 aa17.71■□□□□ 0.43
DDR1-224ENST00000376567 CUX2O14529 1486 aa17.69■□□□□ 0.42
DDR1-224ENST00000376567 SIN3AQ96ST3 1273 aa17.68■□□□□ 0.42
DDR1-224ENST00000376567 RRP7BPQ9NSQ0 103 aa17.66■□□□□ 0.42
DDR1-224ENST00000376567 EIF4G1Q04637 1599 aaKnown RBP17.66■□□□□ 0.42
DDR1-224ENST00000376567 MTUS2Q5JR59 1369 aa17.61■□□□□ 0.41
DDR1-224ENST00000376567 CARMIL1Q5VZK9 1371 aa17.61■□□□□ 0.41
DDR1-224ENST00000376567 VPS8Q8N3P4 1428 aa17.6■□□□□ 0.41
DDR1-224ENST00000376567 TDRD9Q8NDG6 1382 aaKnown RBP17.58■□□□□ 0.41
DDR1-224ENST00000376567 SENP3-EIF4A1A0A087X0R7 540 aa17.54■□□□□ 0.4
DDR1-224ENST00000376567 ANP32CO43423 234 aa17.54■□□□□ 0.4
DDR1-224ENST00000376567 NCAPD3P42695 1498 aa17.51■□□□□ 0.39
DDR1-224ENST00000376567 TONSLQ96HA7 1378 aa17.5■□□□□ 0.39
DDR1-224ENST00000376567 PEG3Q9GZU2 1588 aa17.49■□□□□ 0.39
DDR1-224ENST00000376567 CHMP7Q8WUX9 453 aaPredicted RBP17.49■□□□□ 0.39
DDR1-224ENST00000376567 CCNB3Q8WWL7 1395 aa17.48■□□□□ 0.39
DDR1-224ENST00000376567 DNAJC5BQ9UF47 199 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms