RNA–Protein interactions for RNA: ENST00000340623.4

C2orf88-201, Transcript of chromosome 2 open reading frame 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C2orf88, Length 4,035 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C2orf88-201ENST00000340623 NISCHQ9Y2I1 1504 aa24.53■■□□□ 1.52
C2orf88-201ENST00000340623 DCAF8L2P0C7V8 631 aa22.23■■□□□ 1.15
C2orf88-201ENST00000340623 SHROOM4Q9ULL8 1493 aa21.25■□□□□ 0.99
C2orf88-201ENST00000340623 ABCC9O60706 1549 aa21.01■□□□□ 0.95
C2orf88-201ENST00000340623 CCDC180Q9P1Z9 1646 aa20.92■□□□□ 0.94
C2orf88-201ENST00000340623 SUPT5HO00267 1087 aaKnown RBP20.71■□□□□ 0.91
C2orf88-201ENST00000340623 ZCCHC6Q5VYS8 1495 aaKnown RBP20.43■□□□□ 0.86
C2orf88-201ENST00000340623 PABPN1Q86U42 306 aaKnown RBP eCLIP20.19■□□□□ 0.82
C2orf88-201ENST00000340623 SCRIBQ14160 1630 aa20■□□□□ 0.79
C2orf88-201ENST00000340623 RB1CC1Q8TDY2 1594 aa19.93■□□□□ 0.78
C2orf88-201ENST00000340623 NACADO15069 1562 aa19.91■□□□□ 0.78
C2orf88-201ENST00000340623 DCAF1Q9Y4B6 1507 aa19.83■□□□□ 0.77
C2orf88-201ENST00000340623 MYO15BQ96JP2 1530 aa19.55■□□□□ 0.72
C2orf88-201ENST00000340623 EHMT2Q96KQ7 1210 aa19.41■□□□□ 0.7
C2orf88-201ENST00000340623 FAM9AQ8IZU1 332 aaPredicted RBP19.32■□□□□ 0.68
C2orf88-201ENST00000340623 TRIM41Q8WV44 630 aa19.3■□□□□ 0.68
C2orf88-201ENST00000340623 CECR2Q9BXF3 1484 aa19.27■□□□□ 0.68
C2orf88-201ENST00000340623 RSF1Q96T23 1441 aaPredicted RBP19.2■□□□□ 0.66
C2orf88-201ENST00000340623 CHIC1Q5VXU3 224 aa19.09■□□□□ 0.65
C2orf88-201ENST00000340623 BAZ1AQ9NRL2 1556 aaPredicted RBP19.06■□□□□ 0.64
C2orf88-201ENST00000340623 MROH2BQ7Z745 1585 aa19.02■□□□□ 0.64
C2orf88-201ENST00000340623 BAZ1BQ9UIG0 1483 aaKnown RBP18.91■□□□□ 0.62
C2orf88-201ENST00000340623 RANGAP1P46060 587 aaPredicted RBP18.84■□□□□ 0.61
C2orf88-201ENST00000340623 BICRAQ9NZM4 1560 aa18.8■□□□□ 0.6
C2orf88-201ENST00000340623 WIZO95785 1651 aa18.79■□□□□ 0.6
C2orf88-201ENST00000340623 SMARCA4P51532 1647 aa18.77■□□□□ 0.59
C2orf88-201ENST00000340623 UBTFP17480 764 aaKnown RBP18.76■□□□□ 0.59
C2orf88-201ENST00000340623 UNC13AQ9UPW8 1703 aa18.72■□□□□ 0.59
C2orf88-201ENST00000340623 ATAD2BQ9ULI0 1458 aa18.71■□□□□ 0.59
C2orf88-201ENST00000340623 SMARCA2P51531 1590 aa18.71■□□□□ 0.59
C2orf88-201ENST00000340623 LOC105371045A0A1W2PR82 267 aa18.69■□□□□ 0.58
C2orf88-201ENST00000340623 EIF4G1Q04637 1599 aaKnown RBP18.64■□□□□ 0.57
C2orf88-201ENST00000340623 CCDC88BA6NC98 1476 aa18.61■□□□□ 0.57
C2orf88-201ENST00000340623 TOP2AP11388 1531 aaKnown RBP18.58■□□□□ 0.56
C2orf88-201ENST00000340623 TTBK1Q5TCY1 1321 aaPredicted RBP18.54■□□□□ 0.56
C2orf88-201ENST00000340623 APLP2Q06481 763 aa18.5■□□□□ 0.55
C2orf88-201ENST00000340623 ATP1B4Q9UN42 357 aaPredicted RBP18.45■□□□□ 0.54
C2orf88-201ENST00000340623 PCGF6Q9BYE7 350 aa18.44■□□□□ 0.54
C2orf88-201ENST00000340623 NCAPD3P42695 1498 aa18.44■□□□□ 0.54
C2orf88-201ENST00000340623 CC2D2AQ9P2K1 1620 aa18.42■□□□□ 0.54
C2orf88-201ENST00000340623 WRNQ14191 1432 aaPredicted RBP eCLIP18.39■□□□□ 0.54
C2orf88-201ENST00000340623 DNAJC5BQ9UF47 199 aa18.39■□□□□ 0.53
C2orf88-201ENST00000340623 CSRNP3Q8WYN3 585 aa18.38■□□□□ 0.53
C2orf88-201ENST00000340623 FBLN2P98095 1184 aa18.34■□□□□ 0.53
C2orf88-201ENST00000340623 CADPSQ9ULU8 1353 aa18.34■□□□□ 0.53
C2orf88-201ENST00000340623 ERCC6Q03468 1493 aa18.31■□□□□ 0.52
C2orf88-201ENST00000340623 PPARGC1BQ86YN6 1023 aaKnown RBP18.31■□□□□ 0.52
C2orf88-201ENST00000340623 ABCC8Q09428 1581 aa18.29■□□□□ 0.52
C2orf88-201ENST00000340623 PDS5BQ9NTI5 1447 aa18.22■□□□□ 0.51
C2orf88-201ENST00000340623 HMGXB3Q12766 1538 aa18.21■□□□□ 0.51
C2orf88-201ENST00000340623 NESP48681 1621 aa18.12■□□□□ 0.49
C2orf88-201ENST00000340623 FANCD2Q9BXW9 1451 aa18.12■□□□□ 0.49
C2orf88-201ENST00000340623 PEG3Q9GZU2 1588 aa18.11■□□□□ 0.49
C2orf88-201ENST00000340623 P3H3Q8IVL6 736 aa18.09■□□□□ 0.49
C2orf88-201ENST00000340623 SOGA1O94964 1423 aa18.09■□□□□ 0.49
C2orf88-201ENST00000340623 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.08■□□□□ 0.49
C2orf88-201ENST00000340623 HNRNPUL2Q1KMD3 747 aaKnown RBP18.08■□□□□ 0.49
C2orf88-201ENST00000340623 CEP164Q9UPV0 1460 aa18.07■□□□□ 0.48
C2orf88-201ENST00000340623 KIF27Q86VH2 1401 aa18.05■□□□□ 0.48
C2orf88-201ENST00000340623 CFTRP13569 1480 aa18.04■□□□□ 0.48
C2orf88-201ENST00000340623 CUX2O14529 1486 aa18.03■□□□□ 0.48
C2orf88-201ENST00000340623 EEA1Q15075 1411 aa18■□□□□ 0.47
C2orf88-201ENST00000340623 CHMP7Q8WUX9 453 aaPredicted RBP17.99■□□□□ 0.47
C2orf88-201ENST00000340623 TDRD9Q8NDG6 1382 aaKnown RBP17.98■□□□□ 0.47
C2orf88-201ENST00000340623 ARID3CA6NKF2 412 aa17.91■□□□□ 0.46
C2orf88-201ENST00000340623 GOLGA3Q08378 1498 aa17.87■□□□□ 0.45
C2orf88-201ENST00000340623 RUSC2Q8N2Y8 1516 aa17.86■□□□□ 0.45
C2orf88-201ENST00000340623 FGD5Q6ZNL6 1462 aa17.85■□□□□ 0.45
C2orf88-201ENST00000340623 CARMIL1Q5VZK9 1371 aa17.85■□□□□ 0.45
C2orf88-201ENST00000340623 ITGAEP38570 1179 aa17.83■□□□□ 0.45
C2orf88-201ENST00000340623 RAD54L2Q9Y4B4 1467 aa17.83■□□□□ 0.44
C2orf88-201ENST00000340623 TRIM26Q12899 539 aaPredicted RBP17.81■□□□□ 0.44
C2orf88-201ENST00000340623 SYNJ1O43426 1573 aa17.8■□□□□ 0.44
C2orf88-201ENST00000340623 CLIP1P30622 1438 aa17.79■□□□□ 0.44
C2orf88-201ENST00000340623 LAMC3Q9Y6N6 1575 aa17.77■□□□□ 0.44
C2orf88-201ENST00000340623 CEP162Q5TB80 1403 aa17.75■□□□□ 0.43
C2orf88-201ENST00000340623 CUX1P39880 1505 aa17.75■□□□□ 0.43
C2orf88-201ENST00000340623 TNIKQ9UKE5 1360 aa17.73■□□□□ 0.43
C2orf88-201ENST00000340623 TOPBP1Q92547 1522 aa17.73■□□□□ 0.43
C2orf88-201ENST00000340623 MRC2Q9UBG0 1479 aa17.72■□□□□ 0.43
C2orf88-201ENST00000340623 HRCP23327 699 aa17.71■□□□□ 0.43
C2orf88-201ENST00000340623 AQRO60306 1485 aaKnown RBP eCLIP17.66■□□□□ 0.42
C2orf88-201ENST00000340623 POLA1P09884 1462 aaPredicted RBP17.66■□□□□ 0.42
C2orf88-201ENST00000340623 TOP2BQ02880 1626 aa17.65■□□□□ 0.42
C2orf88-201ENST00000340623 RAPGEF2Q9Y4G8 1499 aa17.65■□□□□ 0.42
C2orf88-201ENST00000340623 CCER1Q8TC90 406 aaPredicted RBP17.64■□□□□ 0.42
C2orf88-201ENST00000340623 FAM50AQ14320 339 aaKnown RBP17.64■□□□□ 0.41
C2orf88-201ENST00000340623 IGF1RP08069 1367 aa17.64■□□□□ 0.41
C2orf88-201ENST00000340623 GAPVD1Q14C86 1478 aa17.64■□□□□ 0.41
C2orf88-201ENST00000340623 DNMBPQ6XZF7 1577 aa17.62■□□□□ 0.41
C2orf88-201ENST00000340623 PELP1Q8IZL8 1130 aaKnown RBP17.61■□□□□ 0.41
C2orf88-201ENST00000340623 MYT1LQ9UL68 1186 aa17.59■□□□□ 0.41
C2orf88-201ENST00000340623 URB2Q14146 1524 aaKnown RBP17.59■□□□□ 0.41
C2orf88-201ENST00000340623 CDK11AQ9UQ88 783 aaPredicted RBP17.53■□□□□ 0.4
C2orf88-201ENST00000340623 IFT140Q96RY7 1462 aa17.51■□□□□ 0.39
C2orf88-201ENST00000340623 NPM1P06748 294 aaKnown RBP eCLIP17.47■□□□□ 0.39
C2orf88-201ENST00000340623 ZNF777Q9ULD5 760 aaPredicted RBP17.47■□□□□ 0.39
C2orf88-201ENST00000340623 GRIN2BQ13224 1484 aa17.46■□□□□ 0.39
C2orf88-201ENST00000340623 MTUS2Q5JR59 1369 aa17.45■□□□□ 0.38
C2orf88-201ENST00000340623 JPH4Q96JJ6 628 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms