RNA–Protein interactions for RNA: ENST00000513263.1

SKP2-207, Transcript of S-phase kinase associated protein 2, humanhuman

TSL 2

Gene SKP2, Length 694 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP2-207ENST00000513263 NISCHQ9Y2I1 1504 aa27.56■■■□□ 2
SKP2-207ENST00000513263 CCDC180Q9P1Z9 1646 aa24.95■■□□□ 1.58
SKP2-207ENST00000513263 ABCC9O60706 1549 aa24.61■■□□□ 1.53
SKP2-207ENST00000513263 RB1CC1Q8TDY2 1594 aa23.65■■□□□ 1.38
SKP2-207ENST00000513263 NACADO15069 1562 aa23.49■■□□□ 1.35
SKP2-207ENST00000513263 MYO15BQ96JP2 1530 aa23.22■■□□□ 1.31
SKP2-207ENST00000513263 UNC13AQ9UPW8 1703 aa23.13■■□□□ 1.29
SKP2-207ENST00000513263 DCAF8L2P0C7V8 631 aa23.02■■□□□ 1.28
SKP2-207ENST00000513263 DCAF1Q9Y4B6 1507 aa22.89■■□□□ 1.26
SKP2-207ENST00000513263 ZCCHC6Q5VYS8 1495 aaKnown RBP22.88■■□□□ 1.25
SKP2-207ENST00000513263 DNAJC5BQ9UF47 199 aa22.86■■□□□ 1.25
SKP2-207ENST00000513263 BICRAQ9NZM4 1560 aa22.83■■□□□ 1.25
SKP2-207ENST00000513263 SHROOM4Q9ULL8 1493 aa22.79■■□□□ 1.24
SKP2-207ENST00000513263 PABPN1Q86U42 306 aaKnown RBP eCLIP22.78■■□□□ 1.24
SKP2-207ENST00000513263 SCRIBQ14160 1630 aa22.53■■□□□ 1.2
SKP2-207ENST00000513263 CC2D2AQ9P2K1 1620 aa22.35■■□□□ 1.17
SKP2-207ENST00000513263 EIF4G1Q04637 1599 aaKnown RBP22.33■■□□□ 1.16
SKP2-207ENST00000513263 CECR2Q9BXF3 1484 aa22.25■■□□□ 1.15
SKP2-207ENST00000513263 NCAPD3P42695 1498 aa21.58■■□□□ 1.05
SKP2-207ENST00000513263 SMARCA2P51531 1590 aa21.57■■□□□ 1.04
SKP2-207ENST00000513263 SMARCA4P51532 1647 aa21.56■■□□□ 1.04
SKP2-207ENST00000513263 HMGXB3Q12766 1538 aa21.55■■□□□ 1.04
SKP2-207ENST00000513263 ATAD2BQ9ULI0 1458 aa21.48■■□□□ 1.03
SKP2-207ENST00000513263 BAZ1AQ9NRL2 1556 aaPredicted RBP21.48■■□□□ 1.03
SKP2-207ENST00000513263 CUX2O14529 1486 aa21.4■■□□□ 1.02
SKP2-207ENST00000513263 PEG3Q9GZU2 1588 aa21.4■■□□□ 1.02
SKP2-207ENST00000513263 ERCC6Q03468 1493 aa21.37■■□□□ 1.01
SKP2-207ENST00000513263 BAZ1BQ9UIG0 1483 aaKnown RBP21.34■■□□□ 1.01
SKP2-207ENST00000513263 LAMC3Q9Y6N6 1575 aa21.21■□□□□ 0.99
SKP2-207ENST00000513263 DNAJC5Q9H3Z4 198 aa21.16■□□□□ 0.98
SKP2-207ENST00000513263 MROH2BQ7Z745 1585 aa21.15■□□□□ 0.98
SKP2-207ENST00000513263 NESP48681 1621 aa21.11■□□□□ 0.97
SKP2-207ENST00000513263 THOC2Q8NI27 1593 aaKnown RBP21.1■□□□□ 0.97
SKP2-207ENST00000513263 KIF21AQ7Z4S6 1674 aa21.04■□□□□ 0.96
SKP2-207ENST00000513263 PDS5BQ9NTI5 1447 aa21.02■□□□□ 0.96
SKP2-207ENST00000513263 WIZO95785 1651 aa20.96■□□□□ 0.95
SKP2-207ENST00000513263 CADPSQ9ULU8 1353 aa20.89■□□□□ 0.93
SKP2-207ENST00000513263 MRC2Q9UBG0 1479 aa20.82■□□□□ 0.92
SKP2-207ENST00000513263 WDR62O43379 1518 aa20.81■□□□□ 0.92
SKP2-207ENST00000513263 TOP2AP11388 1531 aaKnown RBP20.77■□□□□ 0.92
SKP2-207ENST00000513263 CEP164Q9UPV0 1460 aa20.76■□□□□ 0.91
SKP2-207ENST00000513263 PRDM2Q13029 1718 aa20.76■□□□□ 0.91
SKP2-207ENST00000513263 RSF1Q96T23 1441 aaPredicted RBP20.7■□□□□ 0.9
SKP2-207ENST00000513263 CFTRP13569 1480 aa20.69■□□□□ 0.9
SKP2-207ENST00000513263 FANCD2Q9BXW9 1451 aa20.68■□□□□ 0.9
SKP2-207ENST00000513263 URB2Q14146 1524 aaKnown RBP20.46■□□□□ 0.87
SKP2-207ENST00000513263 CCDC88BA6NC98 1476 aa20.4■□□□□ 0.86
SKP2-207ENST00000513263 ABCC8Q09428 1581 aa20.38■□□□□ 0.85
SKP2-207ENST00000513263 IFT140Q96RY7 1462 aa20.33■□□□□ 0.85
SKP2-207ENST00000513263 DNMBPQ6XZF7 1577 aa20.3■□□□□ 0.84
SKP2-207ENST00000513263 TOPBP1Q92547 1522 aa20.29■□□□□ 0.84
SKP2-207ENST00000513263 OSCARQ8IYS5 282 aa20.26■□□□□ 0.83
SKP2-207ENST00000513263 EIF4G3O43432 1585 aaKnown RBP20.22■□□□□ 0.83
SKP2-207ENST00000513263 TRIM41Q8WV44 630 aa20.18■□□□□ 0.82
SKP2-207ENST00000513263 ZNF608Q9ULD9 1512 aaPredicted RBP20.16■□□□□ 0.82
SKP2-207ENST00000513263 WDR97A6NE52 1622 aa20.15■□□□□ 0.82
SKP2-207ENST00000513263 TARBP1Q13395 1621 aaKnown RBP20.15■□□□□ 0.82
SKP2-207ENST00000513263 CHD1O14646 1710 aa20.1■□□□□ 0.81
SKP2-207ENST00000513263 RIMBP3CA6NJZ7 1639 aa20.09■□□□□ 0.81
SKP2-207ENST00000513263 RIMBP3BA6NNM3 1639 aa20.09■□□□□ 0.81
SKP2-207ENST00000513263 RIMBP3Q9UFD9 1639 aa20.09■□□□□ 0.81
SKP2-207ENST00000513263 POLA1P09884 1462 aaPredicted RBP20.08■□□□□ 0.81
SKP2-207ENST00000513263 ARHGEF11O15085 1522 aa20.02■□□□□ 0.79
SKP2-207ENST00000513263 AQRO60306 1485 aaKnown RBP eCLIP19.96■□□□□ 0.798e-8■■■■■ 39.5
SKP2-207ENST00000513263 FGD5Q6ZNL6 1462 aa19.94■□□□□ 0.78
SKP2-207ENST00000513263 SOGA1O94964 1423 aa19.93■□□□□ 0.78
SKP2-207ENST00000513263 CUX1P39880 1505 aa19.92■□□□□ 0.78
SKP2-207ENST00000513263 MAGI1Q96QZ7 1491 aaPredicted RBP19.91■□□□□ 0.78
SKP2-207ENST00000513263 RAD54L2Q9Y4B4 1467 aa19.9■□□□□ 0.78
SKP2-207ENST00000513263 PBRM1Q86U86 1689 aa19.88■□□□□ 0.77
SKP2-207ENST00000513263 SYNJ1O43426 1573 aa19.87■□□□□ 0.77
SKP2-207ENST00000513263 SNAPC4Q5SXM2 1469 aa19.86■□□□□ 0.77
SKP2-207ENST00000513263 GRIN2BQ13224 1484 aa19.85■□□□□ 0.77
SKP2-207ENST00000513263 TDRD9Q8NDG6 1382 aaKnown RBP19.82■□□□□ 0.76
SKP2-207ENST00000513263 FBLN2P98095 1184 aa19.81■□□□□ 0.76
SKP2-207ENST00000513263 CLASP1Q7Z460 1538 aa19.81■□□□□ 0.76
SKP2-207ENST00000513263 SYNJ2O15056 1496 aa19.8■□□□□ 0.76
SKP2-207ENST00000513263 ABCA5Q8WWZ7 1642 aa19.79■□□□□ 0.76
SKP2-207ENST00000513263 ARAP1Q96P48 1450 aa19.77■□□□□ 0.76
SKP2-207ENST00000513263 ABCA10Q8WWZ4 1543 aa19.76■□□□□ 0.75
SKP2-207ENST00000513263 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
SKP2-207ENST00000513263 BIVM-ERCC5R4GMW8 1640 aa19.74■□□□□ 0.75
SKP2-207ENST00000513263 CHMP7Q8WUX9 453 aaPredicted RBP19.73■□□□□ 0.75
SKP2-207ENST00000513263 TOP2BQ02880 1626 aa19.7■□□□□ 0.74
SKP2-207ENST00000513263 CYB5RLQ6IPT4 315 aa19.7■□□□□ 0.74
SKP2-207ENST00000513263 WRNQ14191 1432 aaPredicted RBP eCLIP19.68■□□□□ 0.74
SKP2-207ENST00000513263 SUPT5HO00267 1087 aaKnown RBP19.65■□□□□ 0.74
SKP2-207ENST00000513263 ADAMTS12P58397 1594 aa19.64■□□□□ 0.73
SKP2-207ENST00000513263 GRIN2AQ12879 1464 aa19.59■□□□□ 0.73
SKP2-207ENST00000513263 ERICH3Q5RHP9 1530 aa19.58■□□□□ 0.73
SKP2-207ENST00000513263 TRHP20396 242 aaPredicted RBP19.52■□□□□ 0.72
SKP2-207ENST00000513263 FHAD1B1AJZ9 1412 aa19.51■□□□□ 0.71
SKP2-207ENST00000513263 NUP160Q12769 1436 aa19.51■□□□□ 0.71
SKP2-207ENST00000513263 SHROOM2Q13796 1616 aa19.51■□□□□ 0.71
SKP2-207ENST00000513263 CEP170Q5SW79 1584 aa19.49■□□□□ 0.71
SKP2-207ENST00000513263 CUL7Q14999 1698 aa19.37■□□□□ 0.69
SKP2-207ENST00000513263 RUSC2Q8N2Y8 1516 aa19.36■□□□□ 0.69
SKP2-207ENST00000513263 ERCC6L2Q5T890 1561 aa19.36■□□□□ 0.69
SKP2-207ENST00000513263 KIF27Q86VH2 1401 aa19.27■□□□□ 0.68
SKP2-207ENST00000513263 PRG4Q92954 1404 aaPredicted RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms