Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 AC232323.1-201ENST00000540724 2099 ntBASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 REXO1L5P-201ENST00000622260 2098 ntBASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 MIR943-201ENST00000401286 94 ntBASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 AL158212.4-201ENST00000624062 1286 ntBASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIF3AQ9Y2N7 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 SAMD11P1-201ENST00000571429 661 ntBASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.85□□□□□ -0.19
HIF3AQ9Y2N7 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms