RNA–Protein interactions for RNA: ENST00000439510.2

CDC42EP4-202, Transcript of CDC42 effector protein 4, humanhuman

TSL 2 BASIC

Gene CDC42EP4, Length 2,879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4-202ENST00000439510 NISCHQ9Y2I1 1504 aa31.23■■■□□ 2.59
CDC42EP4-202ENST00000439510 CCDC180Q9P1Z9 1646 aa27.2■■□□□ 1.94
CDC42EP4-202ENST00000439510 SHROOM4Q9ULL8 1493 aa26.37■■□□□ 1.81
CDC42EP4-202ENST00000439510 ZCCHC6Q5VYS8 1495 aaKnown RBP26.22■■□□□ 1.79
CDC42EP4-202ENST00000439510 DCAF8L2P0C7V8 631 aa26.21■■□□□ 1.79
CDC42EP4-202ENST00000439510 ABCC9O60706 1549 aa26.16■■□□□ 1.78
CDC42EP4-202ENST00000439510 SUPT5HO00267 1087 aaKnown RBP26.01■■□□□ 1.75
CDC42EP4-202ENST00000439510 DCAF1Q9Y4B6 1507 aa25.63■■□□□ 1.69
CDC42EP4-202ENST00000439510 MYO15BQ96JP2 1530 aa25.61■■□□□ 1.69
CDC42EP4-202ENST00000439510 CHIC1Q5VXU3 224 aa25.57■■□□□ 1.68
CDC42EP4-202ENST00000439510 HRCP23327 699 aa25.39■■□□□ 1.66
CDC42EP4-202ENST00000439510 NACADO15069 1562 aa25.38■■□□□ 1.65
CDC42EP4-202ENST00000439510 RB1CC1Q8TDY2 1594 aa25.26■■□□□ 1.63
CDC42EP4-202ENST00000439510 SCRIBQ14160 1630 aa25.25■■□□□ 1.63
CDC42EP4-202ENST00000439510 PCGF6Q9BYE7 350 aa25.04■■□□□ 1.6
CDC42EP4-202ENST00000439510 UNC13AQ9UPW8 1703 aa24.9■■□□□ 1.58
CDC42EP4-202ENST00000439510 LOC105371045A0A1W2PR82 267 aa24.74■■□□□ 1.55
CDC42EP4-202ENST00000439510 PABPN1Q86U42 306 aaKnown RBP eCLIP24.72■■□□□ 1.55
CDC42EP4-202ENST00000439510 PPARGC1BQ86YN6 1023 aaKnown RBP24.69■■□□□ 1.54
CDC42EP4-202ENST00000439510 TRIM26Q12899 539 aaPredicted RBP24.58■■□□□ 1.53
CDC42EP4-202ENST00000439510 BICRAQ9NZM4 1560 aa24.57■■□□□ 1.52
CDC42EP4-202ENST00000439510 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
CDC42EP4-202ENST00000439510 CECR2Q9BXF3 1484 aa24.42■■□□□ 1.5
CDC42EP4-202ENST00000439510 TRIM41Q8WV44 630 aa24.26■■□□□ 1.47
CDC42EP4-202ENST00000439510 ZEB1P37275 1124 aaPredicted RBP24.23■■□□□ 1.47
CDC42EP4-202ENST00000439510 MROH2BQ7Z745 1585 aa24.22■■□□□ 1.47
CDC42EP4-202ENST00000439510 BAZ1AQ9NRL2 1556 aaPredicted RBP24.1■■□□□ 1.45
CDC42EP4-202ENST00000439510 SMARCA4P51532 1647 aa24.07■■□□□ 1.44
CDC42EP4-202ENST00000439510 WIZO95785 1651 aa24.06■■□□□ 1.44
CDC42EP4-202ENST00000439510 FAM9AQ8IZU1 332 aaPredicted RBP23.98■■□□□ 1.43
CDC42EP4-202ENST00000439510 EIF4G1Q04637 1599 aaKnown RBP23.85■■□□□ 1.41
CDC42EP4-202ENST00000439510 ATAD2BQ9ULI0 1458 aa23.71■■□□□ 1.39
CDC42EP4-202ENST00000439510 EHMT2Q96KQ7 1210 aa23.69■■□□□ 1.38
CDC42EP4-202ENST00000439510 TOP2AP11388 1531 aaKnown RBP23.65■■□□□ 1.38
CDC42EP4-202ENST00000439510 PEG3Q9GZU2 1588 aa23.65■■□□□ 1.38
CDC42EP4-202ENST00000439510 SMARCA2P51531 1590 aa23.62■■□□□ 1.37
CDC42EP4-202ENST00000439510 BAZ1BQ9UIG0 1483 aaKnown RBP23.59■■□□□ 1.37
CDC42EP4-202ENST00000439510 PELP1Q8IZL8 1130 aaKnown RBP23.59■■□□□ 1.37
CDC42EP4-202ENST00000439510 CC2D2AQ9P2K1 1620 aa23.58■■□□□ 1.37
CDC42EP4-202ENST00000439510 SCAF1Q9H7N4 1312 aaKnown RBP23.57■■□□□ 1.36
CDC42EP4-202ENST00000439510 WRNQ14191 1432 aaPredicted RBP eCLIP23.52■■□□□ 1.36
CDC42EP4-202ENST00000439510 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
CDC42EP4-202ENST00000439510 ABCC8Q09428 1581 aa23.45■■□□□ 1.35
CDC42EP4-202ENST00000439510 NCAPD3P42695 1498 aa23.45■■□□□ 1.34
CDC42EP4-202ENST00000439510 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.44■■□□□ 1.34
CDC42EP4-202ENST00000439510 CCER1Q8TC90 406 aaPredicted RBP23.42■■□□□ 1.34
CDC42EP4-202ENST00000439510 HMGXB3Q12766 1538 aa23.38■■□□□ 1.33
CDC42EP4-202ENST00000439510 CEP162Q5TB80 1403 aa23.37■■□□□ 1.33
CDC42EP4-202ENST00000439510 TNIKQ9UKE5 1360 aa23.33■■□□□ 1.33
CDC42EP4-202ENST00000439510 EEA1Q15075 1411 aa23.32■■□□□ 1.32
CDC42EP4-202ENST00000439510 SOGA1O94964 1423 aa23.28■■□□□ 1.32
CDC42EP4-202ENST00000439510 DNAJC5BQ9UF47 199 aa23.27■■□□□ 1.32
CDC42EP4-202ENST00000439510 ACIN1Q9UKV3 1341 aaKnown RBP23.26■■□□□ 1.31
CDC42EP4-202ENST00000439510 DIEXFQ68CQ4 756 aaKnown RBP23.19■■□□□ 1.3
CDC42EP4-202ENST00000439510 NEUROD1Q13562 356 aa23.16■■□□□ 1.3
CDC42EP4-202ENST00000439510 CSRNP3Q8WYN3 585 aa23.16■■□□□ 1.3
CDC42EP4-202ENST00000439510 RUSC2Q8N2Y8 1516 aa23.14■■□□□ 1.3
CDC42EP4-202ENST00000439510 GOLGA3Q08378 1498 aa23.13■■□□□ 1.29
CDC42EP4-202ENST00000439510 CENPBP07199 599 aaPredicted RBP23.06■■□□□ 1.28
CDC42EP4-202ENST00000439510 TTBK1Q5TCY1 1321 aaPredicted RBP23.05■■□□□ 1.28
CDC42EP4-202ENST00000439510 UBTFP17480 764 aaKnown RBP23.03■■□□□ 1.28
CDC42EP4-202ENST00000439510 KIF21BO75037 1637 aa23.02■■□□□ 1.28
CDC42EP4-202ENST00000439510 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
CDC42EP4-202ENST00000439510 ZNF316A6NFI3 1004 aaPredicted RBP22.95■■□□□ 1.26
CDC42EP4-202ENST00000439510 GTF3C3Q9Y5Q9 886 aa22.95■■□□□ 1.26
CDC42EP4-202ENST00000439510 SYNJ1O43426 1573 aa22.95■■□□□ 1.26
CDC42EP4-202ENST00000439510 NESP48681 1621 aa22.93■■□□□ 1.26
CDC42EP4-202ENST00000439510 CFTRP13569 1480 aa22.92■■□□□ 1.26
CDC42EP4-202ENST00000439510 CADPSQ9ULU8 1353 aa22.9■■□□□ 1.26
CDC42EP4-202ENST00000439510 CLIP1P30622 1438 aa22.85■■□□□ 1.25
CDC42EP4-202ENST00000439510 VPS8Q8N3P4 1428 aa22.83■■□□□ 1.25
CDC42EP4-202ENST00000439510 PRDM2Q13029 1718 aa22.79■■□□□ 1.24
CDC42EP4-202ENST00000439510 RAPGEF2Q9Y4G8 1499 aa22.72■■□□□ 1.23
CDC42EP4-202ENST00000439510 HNRNPUL2Q1KMD3 747 aaKnown RBP22.71■■□□□ 1.23
CDC42EP4-202ENST00000439510 FANCD2Q9BXW9 1451 aa22.7■■□□□ 1.22
CDC42EP4-202ENST00000439510 LAMC3Q9Y6N6 1575 aa22.69■■□□□ 1.22
CDC42EP4-202ENST00000439510 TOP2BQ02880 1626 aa22.67■■□□□ 1.22
CDC42EP4-202ENST00000439510 CUX1P39880 1505 aa22.63■■□□□ 1.21
CDC42EP4-202ENST00000439510 MIER1Q8N108 512 aa22.63■■□□□ 1.21
CDC42EP4-202ENST00000439510 BIVM-ERCC5R4GMW8 1640 aa22.62■■□□□ 1.21
CDC42EP4-202ENST00000439510 APLP2Q06481 763 aa22.6■■□□□ 1.21
CDC42EP4-202ENST00000439510 KIF21AQ7Z4S6 1674 aa22.6■■□□□ 1.21
CDC42EP4-202ENST00000439510 ERICH3Q5RHP9 1530 aa22.59■■□□□ 1.21
CDC42EP4-202ENST00000439510 MYT1Q01538 1121 aa22.57■■□□□ 1.2
CDC42EP4-202ENST00000439510 YTHDC1Q96MU7 727 aaKnown RBP22.56■■□□□ 1.2
CDC42EP4-202ENST00000439510 CLSPNQ9HAW4 1339 aa22.55■■□□□ 1.2
CDC42EP4-202ENST00000439510 PDS5BQ9NTI5 1447 aa22.55■■□□□ 1.2
CDC42EP4-202ENST00000439510 PRXQ9BXM0 1461 aa22.51■■□□□ 1.19
CDC42EP4-202ENST00000439510 ARAP1Q96P48 1450 aa22.48■■□□□ 1.19
CDC42EP4-202ENST00000439510 DHX57Q6P158 1386 aaKnown RBP22.45■■□□□ 1.18
CDC42EP4-202ENST00000439510 URB2Q14146 1524 aaKnown RBP22.44■■□□□ 1.18
CDC42EP4-202ENST00000439510 TOPBP1Q92547 1522 aa22.42■■□□□ 1.18
CDC42EP4-202ENST00000439510 FGD5Q6ZNL6 1462 aa22.42■■□□□ 1.18
CDC42EP4-202ENST00000439510 DNMBPQ6XZF7 1577 aa22.4■■□□□ 1.18
CDC42EP4-202ENST00000439510 ERCC6Q03468 1493 aa22.4■■□□□ 1.18
CDC42EP4-202ENST00000439510 RRBP1Q9P2E9 1410 aaKnown RBP22.38■■□□□ 1.17
CDC42EP4-202ENST00000439510 RANGAP1P46060 587 aaPredicted RBP22.37■■□□□ 1.17
CDC42EP4-202ENST00000439510 CUX2O14529 1486 aa22.36■■□□□ 1.17
CDC42EP4-202ENST00000439510 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
CDC42EP4-202ENST00000439510 POLA1P09884 1462 aaPredicted RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms