Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
IFT140Q96RY7 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
IFT140Q96RY7 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC24.52■■□□□ 1.52
IFT140Q96RY7 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
IFT140Q96RY7 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 AGGF1P2-201ENST00000426656 2106 ntBASIC24.51■■□□□ 1.51
IFT140Q96RY7 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 PYY2-201ENST00000315776 282 ntBASIC24.51■■□□□ 1.51
IFT140Q96RY7 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 MIR1301-201ENST00000408518 82 ntBASIC24.51■■□□□ 1.51
IFT140Q96RY7 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
IFT140Q96RY7 AC018638.5-201ENST00000450885 754 ntBASIC24.51■■□□□ 1.51
IFT140Q96RY7 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 RN7SL277P-201ENST00000481521 288 ntBASIC24.51■■□□□ 1.51
IFT140Q96RY7 IGHEP1-201ENST00000521393 651 ntBASIC24.51■■□□□ 1.51
IFT140Q96RY7 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC24.51■■□□□ 1.51
IFT140Q96RY7 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 KRT8P28-201ENST00000433288 1390 ntBASIC24.5■■□□□ 1.51
IFT140Q96RY7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 JTB-202ENST00000356648 1040 ntTSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 AC063952.3-201ENST00000467756 308 ntBASIC24.5■■□□□ 1.51
IFT140Q96RY7 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC24.5■■□□□ 1.51
IFT140Q96RY7 AL136172.1-201ENST00000598590 1394 ntBASIC24.5■■□□□ 1.51
IFT140Q96RY7 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
IFT140Q96RY7 SALL4P5-201ENST00000419001 1760 ntBASIC24.5■■□□□ 1.51
IFT140Q96RY7 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
IFT140Q96RY7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
IFT140Q96RY7 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
IFT140Q96RY7 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
IFT140Q96RY7 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 NME6-208ENST00000435684 599 ntTSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 OR2A1-AS1-210ENST00000496968 531 ntBASIC24.49■■□□□ 1.51
IFT140Q96RY7 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 MVK-217ENST00000639206 367 ntTSL 5 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
IFT140Q96RY7 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 PHB-210ENST00000511832 1509 ntTSL 2 BASIC24.49■■□□□ 1.51
IFT140Q96RY7 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
IFT140Q96RY7 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
IFT140Q96RY7 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
IFT140Q96RY7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
IFT140Q96RY7 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms