RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 NISCHQ9Y2I1 1504 aa33.81■■■■□ 3
LIMS1-201ENST00000332345 CCDC180Q9P1Z9 1646 aa30.03■■■□□ 2.4
LIMS1-201ENST00000332345 ABCC9O60706 1549 aa29.4■■■□□ 2.3
LIMS1-201ENST00000332345 DCAF8L2P0C7V8 631 aa28.39■■■□□ 2.14
LIMS1-201ENST00000332345 RB1CC1Q8TDY2 1594 aa28.3■■■□□ 2.12
LIMS1-201ENST00000332345 NACADO15069 1562 aa28.28■■■□□ 2.12
LIMS1-201ENST00000332345 ZCCHC6Q5VYS8 1495 aaKnown RBP28.13■■■□□ 2.09
LIMS1-201ENST00000332345 MYO15BQ96JP2 1530 aa28.1■■■□□ 2.09
LIMS1-201ENST00000332345 DCAF1Q9Y4B6 1507 aa27.97■■■□□ 2.07
LIMS1-201ENST00000332345 UNC13AQ9UPW8 1703 aa27.61■■■□□ 2.01
LIMS1-201ENST00000332345 PABPN1Q86U42 306 aaKnown RBP eCLIP27.53■■■□□ 2
LIMS1-201ENST00000332345 SCRIBQ14160 1630 aa27.39■■□□□ 1.98
LIMS1-201ENST00000332345 BICRAQ9NZM4 1560 aa27.39■■□□□ 1.97
LIMS1-201ENST00000332345 SHROOM4Q9ULL8 1493 aa27.14■■□□□ 1.94
LIMS1-201ENST00000332345 DNAJC5BQ9UF47 199 aa27.01■■□□□ 1.91
LIMS1-201ENST00000332345 EIF4G1Q04637 1599 aaKnown RBP26.69■■□□□ 1.86
LIMS1-201ENST00000332345 CC2D2AQ9P2K1 1620 aa26.58■■□□□ 1.85
LIMS1-201ENST00000332345 CECR2Q9BXF3 1484 aa26.43■■□□□ 1.82
LIMS1-201ENST00000332345 BAZ1AQ9NRL2 1556 aaPredicted RBP26.21■■□□□ 1.79
LIMS1-201ENST00000332345 SMARCA4P51532 1647 aa26.21■■□□□ 1.79
LIMS1-201ENST00000332345 NCAPD3P42695 1498 aa26.1■■□□□ 1.77
LIMS1-201ENST00000332345 ATAD2BQ9ULI0 1458 aa26.09■■□□□ 1.77
LIMS1-201ENST00000332345 SMARCA2P51531 1590 aa26.07■■□□□ 1.76
LIMS1-201ENST00000332345 MROH2BQ7Z745 1585 aa26.03■■□□□ 1.76
LIMS1-201ENST00000332345 AEBP2Q6ZN18 517 aaPredicted RBP26.01■■□□□ 1.75
LIMS1-201ENST00000332345 PEG3Q9GZU2 1588 aa25.95■■□□□ 1.75
LIMS1-201ENST00000332345 HMGXB3Q12766 1538 aa25.93■■□□□ 1.74
LIMS1-201ENST00000332345 BAZ1BQ9UIG0 1483 aaKnown RBP25.89■■□□□ 1.73
LIMS1-201ENST00000332345 RSF1Q96T23 1441 aaPredicted RBP25.77■■□□□ 1.72
LIMS1-201ENST00000332345 WIZO95785 1651 aa25.76■■□□□ 1.71
LIMS1-201ENST00000332345 CHIC1Q5VXU3 224 aa25.52■■□□□ 1.68
LIMS1-201ENST00000332345 TOP2AP11388 1531 aaKnown RBP25.48■■□□□ 1.67
LIMS1-201ENST00000332345 NESP48681 1621 aa25.42■■□□□ 1.66
LIMS1-201ENST00000332345 LAMC3Q9Y6N6 1575 aa25.39■■□□□ 1.66
LIMS1-201ENST00000332345 ERCC6Q03468 1493 aa25.38■■□□□ 1.65
LIMS1-201ENST00000332345 CADPSQ9ULU8 1353 aa25.36■■□□□ 1.65
LIMS1-201ENST00000332345 PDS5BQ9NTI5 1447 aa25.28■■□□□ 1.64
LIMS1-201ENST00000332345 CCDC88BA6NC98 1476 aa25.22■■□□□ 1.63
LIMS1-201ENST00000332345 SUPT5HO00267 1087 aaKnown RBP25.21■■□□□ 1.63
LIMS1-201ENST00000332345 CFTRP13569 1480 aa25.17■■□□□ 1.62
LIMS1-201ENST00000332345 KIF21AQ7Z4S6 1674 aa25.11■■□□□ 1.61
LIMS1-201ENST00000332345 CUX2O14529 1486 aa25.09■■□□□ 1.61
LIMS1-201ENST00000332345 FANCD2Q9BXW9 1451 aa25.03■■□□□ 1.6
LIMS1-201ENST00000332345 CEP164Q9UPV0 1460 aa25.01■■□□□ 1.59
LIMS1-201ENST00000332345 THOC2Q8NI27 1593 aaKnown RBP25■■□□□ 1.59
LIMS1-201ENST00000332345 MRC2Q9UBG0 1479 aa24.96■■□□□ 1.59
LIMS1-201ENST00000332345 PRDM2Q13029 1718 aa24.95■■□□□ 1.59
LIMS1-201ENST00000332345 WDR62O43379 1518 aa24.84■■□□□ 1.57
LIMS1-201ENST00000332345 URB2Q14146 1524 aaKnown RBP24.76■■□□□ 1.55
LIMS1-201ENST00000332345 ABCC8Q09428 1581 aa24.69■■□□□ 1.54
LIMS1-201ENST00000332345 TOPBP1Q92547 1522 aa24.62■■□□□ 1.53
LIMS1-201ENST00000332345 DNMBPQ6XZF7 1577 aa24.59■■□□□ 1.53
LIMS1-201ENST00000332345 IFT140Q96RY7 1462 aa24.49■■□□□ 1.51
LIMS1-201ENST00000332345 CUX1P39880 1505 aa24.42■■□□□ 1.5
LIMS1-201ENST00000332345 POLA1P09884 1462 aaPredicted RBP24.4■■□□□ 1.5
LIMS1-201ENST00000332345 DNAJC5Q9H3Z4 198 aa24.38■■□□□ 1.49
LIMS1-201ENST00000332345 SOGA1O94964 1423 aa24.37■■□□□ 1.49
LIMS1-201ENST00000332345 FGD5Q6ZNL6 1462 aa24.35■■□□□ 1.49
LIMS1-201ENST00000332345 ZNF608Q9ULD9 1512 aaPredicted RBP24.35■■□□□ 1.49
LIMS1-201ENST00000332345 TARBP1Q13395 1621 aaKnown RBP24.33■■□□□ 1.49
LIMS1-201ENST00000332345 WRNQ14191 1432 aaPredicted RBP eCLIP24.31■■□□□ 1.48
LIMS1-201ENST00000332345 RAD54L2Q9Y4B4 1467 aa24.31■■□□□ 1.48
LIMS1-201ENST00000332345 AQRO60306 1485 aaKnown RBP eCLIP24.25■■□□□ 1.47
LIMS1-201ENST00000332345 TOP2BQ02880 1626 aa24.23■■□□□ 1.47
LIMS1-201ENST00000332345 EIF4G3O43432 1585 aaKnown RBP24.22■■□□□ 1.47
LIMS1-201ENST00000332345 TDRD9Q8NDG6 1382 aaKnown RBP24.22■■□□□ 1.47
LIMS1-201ENST00000332345 BIVM-ERCC5R4GMW8 1640 aa24.21■■□□□ 1.47
LIMS1-201ENST00000332345 SYNJ1O43426 1573 aa24.19■■□□□ 1.46
LIMS1-201ENST00000332345 WDR97A6NE52 1622 aa24.17■■□□□ 1.46
LIMS1-201ENST00000332345 OSCARQ8IYS5 282 aa24.16■■□□□ 1.46
LIMS1-201ENST00000332345 ABCA10Q8WWZ4 1543 aa24.13■■□□□ 1.45
LIMS1-201ENST00000332345 GAPVD1Q14C86 1478 aa24.07■■□□□ 1.44
LIMS1-201ENST00000332345 GRIN2BQ13224 1484 aa24.06■■□□□ 1.44
LIMS1-201ENST00000332345 FBLN2P98095 1184 aa24.04■■□□□ 1.44
LIMS1-201ENST00000332345 SNAPC4Q5SXM2 1469 aa23.99■■□□□ 1.43
LIMS1-201ENST00000332345 MAGI1Q96QZ7 1491 aaPredicted RBP23.99■■□□□ 1.43
LIMS1-201ENST00000332345 ABCA5Q8WWZ7 1642 aa23.99■■□□□ 1.43
LIMS1-201ENST00000332345 CHMP7Q8WUX9 453 aaPredicted RBP23.98■■□□□ 1.43
LIMS1-201ENST00000332345 PBRM1Q86U86 1689 aa23.96■■□□□ 1.43
LIMS1-201ENST00000332345 CHD1O14646 1710 aa23.93■■□□□ 1.42
LIMS1-201ENST00000332345 SYNJ2O15056 1496 aa23.89■■□□□ 1.42
LIMS1-201ENST00000332345 ERICH3Q5RHP9 1530 aa23.85■■□□□ 1.41
LIMS1-201ENST00000332345 TRIM41Q8WV44 630 aa23.84■■□□□ 1.41
LIMS1-201ENST00000332345 KIF27Q86VH2 1401 aa23.83■■□□□ 1.4
LIMS1-201ENST00000332345 FHAD1B1AJZ9 1412 aa23.79■■□□□ 1.4
LIMS1-201ENST00000332345 ADAMTS12P58397 1594 aa23.75■■□□□ 1.39
LIMS1-201ENST00000332345 IGF1RP08069 1367 aa23.74■■□□□ 1.39
LIMS1-201ENST00000332345 GRIN2AQ12879 1464 aa23.72■■□□□ 1.39
LIMS1-201ENST00000332345 CLASP1Q7Z460 1538 aa23.66■■□□□ 1.38
LIMS1-201ENST00000332345 ARHGEF11O15085 1522 aa23.64■■□□□ 1.37
LIMS1-201ENST00000332345 RIMBP3CA6NJZ7 1639 aa23.63■■□□□ 1.37
LIMS1-201ENST00000332345 RIMBP3BA6NNM3 1639 aa23.63■■□□□ 1.37
LIMS1-201ENST00000332345 RIMBP3Q9UFD9 1639 aa23.63■■□□□ 1.37
LIMS1-201ENST00000332345 CUL7Q14999 1698 aa23.63■■□□□ 1.37
LIMS1-201ENST00000332345 NUP160Q12769 1436 aa23.61■■□□□ 1.37
LIMS1-201ENST00000332345 CARMIL1Q5VZK9 1371 aa23.61■■□□□ 1.37
LIMS1-201ENST00000332345 CEP170Q5SW79 1584 aa23.57■■□□□ 1.36
LIMS1-201ENST00000332345 RUSC2Q8N2Y8 1516 aa23.56■■□□□ 1.36
LIMS1-201ENST00000332345 CYB5RLQ6IPT4 315 aa23.53■■□□□ 1.36
LIMS1-201ENST00000332345 JPH4Q96JJ6 628 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms