RNA–Protein interactions for RNA: ENST00000470091.1

LINC00173-201, long intergenic non-protein coding RNA 173, humanhuman

TSL 1 (best) BASIC

Gene LINC00173, Length 435 nt, Biotype lincRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00173-201ENST00000470091 NISCHQ9Y2I1 1504 aa33.28■■■□□ 2.92
LINC00173-201ENST00000470091 ABCC9O60706 1549 aa29.96■■■□□ 2.39
LINC00173-201ENST00000470091 CCDC180Q9P1Z9 1646 aa29.71■■■□□ 2.35
LINC00173-201ENST00000470091 DCAF8L2P0C7V8 631 aa28.41■■■□□ 2.14
LINC00173-201ENST00000470091 RB1CC1Q8TDY2 1594 aa28.39■■■□□ 2.14
LINC00173-201ENST00000470091 DNAJC5BQ9UF47 199 aa28.2■■■□□ 2.1
LINC00173-201ENST00000470091 NACADO15069 1562 aa28.18■■■□□ 2.1
LINC00173-201ENST00000470091 PABPN1Q86U42 306 aaKnown RBP eCLIP28.02■■■□□ 2.08
LINC00173-201ENST00000470091 MYO15BQ96JP2 1530 aa27.72■■■□□ 2.03
LINC00173-201ENST00000470091 UNC13AQ9UPW8 1703 aa27.69■■■□□ 2.02
LINC00173-201ENST00000470091 BICRAQ9NZM4 1560 aa27.56■■■□□ 2
LINC00173-201ENST00000470091 ZCCHC6Q5VYS8 1495 aaKnown RBP27.53■■■□□ 2
LINC00173-201ENST00000470091 DCAF1Q9Y4B6 1507 aa27.38■■□□□ 1.97
LINC00173-201ENST00000470091 SCRIBQ14160 1630 aa27.24■■□□□ 1.95
LINC00173-201ENST00000470091 SHROOM4Q9ULL8 1493 aa27.07■■□□□ 1.92
LINC00173-201ENST00000470091 CC2D2AQ9P2K1 1620 aa26.97■■□□□ 1.91
LINC00173-201ENST00000470091 CECR2Q9BXF3 1484 aa26.95■■□□□ 1.91
LINC00173-201ENST00000470091 EIF4G1Q04637 1599 aaKnown RBP26.9■■□□□ 1.9
LINC00173-201ENST00000470091 NCAPD3P42695 1498 aa26.06■■□□□ 1.76
LINC00173-201ENST00000470091 ATAD2BQ9ULI0 1458 aa26.01■■□□□ 1.75
LINC00173-201ENST00000470091 SMARCA4P51532 1647 aa25.92■■□□□ 1.74
LINC00173-201ENST00000470091 SMARCA2P51531 1590 aa25.88■■□□□ 1.73
LINC00173-201ENST00000470091 ERCC6Q03468 1493 aa25.85■■□□□ 1.73
LINC00173-201ENST00000470091 DNAJC5Q9H3Z4 198 aa25.85■■□□□ 1.73
LINC00173-201ENST00000470091 HMGXB3Q12766 1538 aa25.79■■□□□ 1.72
LINC00173-201ENST00000470091 BAZ1AQ9NRL2 1556 aaPredicted RBP25.79■■□□□ 1.72
LINC00173-201ENST00000470091 BAZ1BQ9UIG0 1483 aaKnown RBP25.76■■□□□ 1.71
LINC00173-201ENST00000470091 NESP48681 1621 aa25.73■■□□□ 1.71
LINC00173-201ENST00000470091 CUX2O14529 1486 aa25.7■■□□□ 1.7
LINC00173-201ENST00000470091 MROH2BQ7Z745 1585 aa25.68■■□□□ 1.7
LINC00173-201ENST00000470091 PEG3Q9GZU2 1588 aa25.61■■□□□ 1.69
LINC00173-201ENST00000470091 LAMC3Q9Y6N6 1575 aa25.42■■□□□ 1.66
LINC00173-201ENST00000470091 PDS5BQ9NTI5 1447 aa25.37■■□□□ 1.65
LINC00173-201ENST00000470091 WIZO95785 1651 aa25.36■■□□□ 1.65
LINC00173-201ENST00000470091 CADPSQ9ULU8 1353 aa25.33■■□□□ 1.65
LINC00173-201ENST00000470091 THOC2Q8NI27 1593 aaKnown RBP25.31■■□□□ 1.64
LINC00173-201ENST00000470091 KIF21AQ7Z4S6 1674 aa25.29■■□□□ 1.64
LINC00173-201ENST00000470091 RSF1Q96T23 1441 aaPredicted RBP25.17■■□□□ 1.62
LINC00173-201ENST00000470091 MRC2Q9UBG0 1479 aa25.11■■□□□ 1.61
LINC00173-201ENST00000470091 FANCD2Q9BXW9 1451 aa25.02■■□□□ 1.6
LINC00173-201ENST00000470091 CEP164Q9UPV0 1460 aa25.02■■□□□ 1.6
LINC00173-201ENST00000470091 WDR62O43379 1518 aa24.99■■□□□ 1.59
LINC00173-201ENST00000470091 TOP2AP11388 1531 aaKnown RBP24.98■■□□□ 1.59
LINC00173-201ENST00000470091 CFTRP13569 1480 aa24.98■■□□□ 1.59
LINC00173-201ENST00000470091 TRIM41Q8WV44 630 aa24.83■■□□□ 1.57
LINC00173-201ENST00000470091 URB2Q14146 1524 aaKnown RBP24.81■■□□□ 1.56
LINC00173-201ENST00000470091 CCDC88BA6NC98 1476 aa24.8■■□□□ 1.56
LINC00173-201ENST00000470091 OSCARQ8IYS5 282 aa24.7■■□□□ 1.54
LINC00173-201ENST00000470091 PRDM2Q13029 1718 aa24.58■■□□□ 1.52
LINC00173-201ENST00000470091 ZNF608Q9ULD9 1512 aaPredicted RBP24.54■■□□□ 1.52
LINC00173-201ENST00000470091 TOPBP1Q92547 1522 aa24.53■■□□□ 1.52
LINC00173-201ENST00000470091 IFT140Q96RY7 1462 aa24.51■■□□□ 1.51
LINC00173-201ENST00000470091 ABCC8Q09428 1581 aa24.45■■□□□ 1.5
LINC00173-201ENST00000470091 DNMBPQ6XZF7 1577 aa24.39■■□□□ 1.5
LINC00173-201ENST00000470091 AQRO60306 1485 aaKnown RBP eCLIP24.36■■□□□ 1.491e-7■■■□□ 17.9
LINC00173-201ENST00000470091 FBLN2P98095 1184 aa24.32■■□□□ 1.48
LINC00173-201ENST00000470091 EIF4G3O43432 1585 aaKnown RBP24.3■■□□□ 1.48
LINC00173-201ENST00000470091 POLA1P09884 1462 aaPredicted RBP24.27■■□□□ 1.48
LINC00173-201ENST00000470091 SUPT5HO00267 1087 aaKnown RBP24.27■■□□□ 1.48
LINC00173-201ENST00000470091 RAD54L2Q9Y4B4 1467 aa24.26■■□□□ 1.47
LINC00173-201ENST00000470091 TARBP1Q13395 1621 aaKnown RBP24.26■■□□□ 1.47
LINC00173-201ENST00000470091 TDRD9Q8NDG6 1382 aaKnown RBP24.25■■□□□ 1.47
LINC00173-201ENST00000470091 SOGA1O94964 1423 aa24.25■■□□□ 1.47
LINC00173-201ENST00000470091 RIMBP3CA6NJZ7 1639 aa24.24■■□□□ 1.47
LINC00173-201ENST00000470091 RIMBP3BA6NNM3 1639 aa24.24■■□□□ 1.47
LINC00173-201ENST00000470091 RIMBP3Q9UFD9 1639 aa24.24■■□□□ 1.47
LINC00173-201ENST00000470091 CYB5RLQ6IPT4 315 aa24.19■■□□□ 1.46
LINC00173-201ENST00000470091 ARHGEF11O15085 1522 aa24.18■■□□□ 1.46
LINC00173-201ENST00000470091 FGD5Q6ZNL6 1462 aa24.14■■□□□ 1.46
LINC00173-201ENST00000470091 CHD1O14646 1710 aa24.12■■□□□ 1.45
LINC00173-201ENST00000470091 CUX1P39880 1505 aa24.11■■□□□ 1.45
LINC00173-201ENST00000470091 CHMP7Q8WUX9 453 aaPredicted RBP24.08■■□□□ 1.45
LINC00173-201ENST00000470091 SNAPC4Q5SXM2 1469 aa24.04■■□□□ 1.44
LINC00173-201ENST00000470091 GRIN2BQ13224 1484 aa23.97■■□□□ 1.43
LINC00173-201ENST00000470091 ARAP1Q96P48 1450 aa23.95■■□□□ 1.42
LINC00173-201ENST00000470091 TRHP20396 242 aaPredicted RBP23.95■■□□□ 1.42
LINC00173-201ENST00000470091 MAGI1Q96QZ7 1491 aaPredicted RBP23.93■■□□□ 1.42
LINC00173-201ENST00000470091 WDR97A6NE52 1622 aa23.91■■□□□ 1.42
LINC00173-201ENST00000470091 GAPVD1Q14C86 1478 aa23.9■■□□□ 1.42
LINC00173-201ENST00000470091 SYNJ2O15056 1496 aa23.87■■□□□ 1.41
LINC00173-201ENST00000470091 SYNJ1O43426 1573 aa23.84■■□□□ 1.41
LINC00173-201ENST00000470091 CLASP1Q7Z460 1538 aa23.84■■□□□ 1.41
LINC00173-201ENST00000470091 ABCA10Q8WWZ4 1543 aa23.83■■□□□ 1.41
LINC00173-201ENST00000470091 WRNQ14191 1432 aaPredicted RBP eCLIP23.8■■□□□ 1.4
LINC00173-201ENST00000470091 PBRM1Q86U86 1689 aa23.78■■□□□ 1.4
LINC00173-201ENST00000470091 ABCA5Q8WWZ7 1642 aa23.73■■□□□ 1.39
LINC00173-201ENST00000470091 TOP2BQ02880 1626 aa23.67■■□□□ 1.38
LINC00173-201ENST00000470091 GRIN2AQ12879 1464 aa23.64■■□□□ 1.38
LINC00173-201ENST00000470091 BIVM-ERCC5R4GMW8 1640 aa23.63■■□□□ 1.37
LINC00173-201ENST00000470091 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
LINC00173-201ENST00000470091 ADAMTS12P58397 1594 aa23.57■■□□□ 1.36
LINC00173-201ENST00000470091 ERCC6L2Q5T890 1561 aa23.56■■□□□ 1.36
LINC00173-201ENST00000470091 NUP160Q12769 1436 aa23.55■■□□□ 1.36
LINC00173-201ENST00000470091 CEP170Q5SW79 1584 aa23.54■■□□□ 1.36
LINC00173-201ENST00000470091 ERICH3Q5RHP9 1530 aa23.5■■□□□ 1.35
LINC00173-201ENST00000470091 JPH4Q96JJ6 628 aa23.46■■□□□ 1.35
LINC00173-201ENST00000470091 PRG4Q92954 1404 aaPredicted RBP23.42■■□□□ 1.34
LINC00173-201ENST00000470091 SHROOM2Q13796 1616 aa23.37■■□□□ 1.33
LINC00173-201ENST00000470091 IGF1RP08069 1367 aa23.34■■□□□ 1.33
LINC00173-201ENST00000470091 KIF27Q86VH2 1401 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms