Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
CX3CL1P78423 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.43□□□□□ -0.42
CX3CL1P78423 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC12.43□□□□□ -0.42
CX3CL1P78423 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.43□□□□□ -0.42
CX3CL1P78423 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC12.43□□□□□ -0.42
CX3CL1P78423 HNRNPA1P40-201ENST00000426371 1278 ntBASIC12.43□□□□□ -0.42
CX3CL1P78423 FAM8A3P-201ENST00000427218 844 ntBASIC12.43□□□□□ -0.42
CX3CL1P78423 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC12.43□□□□□ -0.42
CX3CL1P78423 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC12.43□□□□□ -0.42
CX3CL1P78423 INGX-202ENST00000489074 768 ntBASIC12.43□□□□□ -0.42
CX3CL1P78423 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.43□□□□□ -0.42
CX3CL1P78423 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.43□□□□□ -0.42
CX3CL1P78423 AC135586.1-201ENST00000539323 574 ntBASIC12.43□□□□□ -0.42
CX3CL1P78423 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
CX3CL1P78423 AC008738.7-201ENST00000609744 511 ntBASIC12.43□□□□□ -0.42
CX3CL1P78423 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
CX3CL1P78423 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.43□□□□□ -0.42
CX3CL1P78423 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
CX3CL1P78423 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
CX3CL1P78423 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CX3CL1P78423 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.42□□□□□ -0.42
CX3CL1P78423 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 AC138969.3-201ENST00000546612 1459 ntBASIC12.42□□□□□ -0.42
CX3CL1P78423 AC138932.2-201ENST00000548268 1459 ntBASIC12.42□□□□□ -0.42
CX3CL1P78423 AC126755.4-201ENST00000549796 1459 ntBASIC12.42□□□□□ -0.42
CX3CL1P78423 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CX3CL1P78423 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC12.42□□□□□ -0.42
CX3CL1P78423 C8orf49-201ENST00000525043 1968 ntBASIC12.42□□□□□ -0.42
CX3CL1P78423 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC12.42□□□□□ -0.42
CX3CL1P78423 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 TOMM22P5-201ENST00000416399 439 ntBASIC12.42□□□□□ -0.42
CX3CL1P78423 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CX3CL1P78423 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.42□□□□□ -0.42
CX3CL1P78423 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CX3CL1P78423 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.42□□□□□ -0.42
CX3CL1P78423 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.42□□□□□ -0.42
CX3CL1P78423 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CX3CL1P78423 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12.42□□□□□ -0.42
CX3CL1P78423 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms