RNA–Protein interactions for RNA: ENST00000620709.4

CD40-207, Transcript of CD40 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD40, Length 1,522 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-207ENST00000620709 NISCHQ9Y2I1 1504 aa39.61■■■■□ 3.93
CD40-207ENST00000620709 CCDC180Q9P1Z9 1646 aa35.42■■■■□ 3.26
CD40-207ENST00000620709 ABCC9O60706 1549 aa35.37■■■■□ 3.25
CD40-207ENST00000620709 RB1CC1Q8TDY2 1594 aa33.68■■■□□ 2.98
CD40-207ENST00000620709 DCAF8L2P0C7V8 631 aa33.58■■■□□ 2.97
CD40-207ENST00000620709 NACADO15069 1562 aa33.46■■■□□ 2.95
CD40-207ENST00000620709 PABPN1Q86U42 306 aaKnown RBP eCLIP33.01■■■□□ 2.87
CD40-207ENST00000620709 DNAJC5BQ9UF47 199 aa32.97■■■□□ 2.87
CD40-207ENST00000620709 MYO15BQ96JP2 1530 aa32.97■■■□□ 2.87
CD40-207ENST00000620709 UNC13AQ9UPW8 1703 aa32.93■■■□□ 2.86
CD40-207ENST00000620709 ZCCHC6Q5VYS8 1495 aaKnown RBP32.85■■■□□ 2.85
CD40-207ENST00000620709 BICRAQ9NZM4 1560 aa32.65■■■□□ 2.82
CD40-207ENST00000620709 DCAF1Q9Y4B6 1507 aa32.64■■■□□ 2.82
CD40-207ENST00000620709 SCRIBQ14160 1630 aa32.42■■■□□ 2.78
CD40-207ENST00000620709 SHROOM4Q9ULL8 1493 aa32.16■■■□□ 2.74
CD40-207ENST00000620709 CC2D2AQ9P2K1 1620 aa31.91■■■□□ 2.7
CD40-207ENST00000620709 EIF4G1Q04637 1599 aaKnown RBP31.87■■■□□ 2.69
CD40-207ENST00000620709 CECR2Q9BXF3 1484 aa31.81■■■□□ 2.68
CD40-207ENST00000620709 NCAPD3P42695 1498 aa30.87■■■□□ 2.53
CD40-207ENST00000620709 SMARCA4P51532 1647 aa30.87■■■□□ 2.53
CD40-207ENST00000620709 ATAD2BQ9ULI0 1458 aa30.84■■■□□ 2.53
CD40-207ENST00000620709 SMARCA2P51531 1590 aa30.77■■■□□ 2.52
CD40-207ENST00000620709 BAZ1AQ9NRL2 1556 aaPredicted RBP30.73■■■□□ 2.51
CD40-207ENST00000620709 HMGXB3Q12766 1538 aa30.66■■■□□ 2.5
CD40-207ENST00000620709 BAZ1BQ9UIG0 1483 aaKnown RBP30.6■■■□□ 2.49
CD40-207ENST00000620709 MROH2BQ7Z745 1585 aa30.55■■■□□ 2.48
CD40-207ENST00000620709 ERCC6Q03468 1493 aa30.54■■■□□ 2.48
CD40-207ENST00000620709 PEG3Q9GZU2 1588 aa30.49■■■□□ 2.47
CD40-207ENST00000620709 NESP48681 1621 aa30.42■■■□□ 2.46
CD40-207ENST00000620709 CUX2O14529 1486 aa30.31■■■□□ 2.44
CD40-207ENST00000620709 WIZO95785 1651 aa30.22■■■□□ 2.43
CD40-207ENST00000620709 LAMC3Q9Y6N6 1575 aa30.17■■■□□ 2.42
CD40-207ENST00000620709 DNAJC5Q9H3Z4 198 aa30.11■■■□□ 2.41
CD40-207ENST00000620709 KIF21AQ7Z4S6 1674 aa30.03■■■□□ 2.4
CD40-207ENST00000620709 PDS5BQ9NTI5 1447 aa30.03■■■□□ 2.4
CD40-207ENST00000620709 THOC2Q8NI27 1593 aaKnown RBP30.01■■■□□ 2.39
CD40-207ENST00000620709 CADPSQ9ULU8 1353 aa29.99■■■□□ 2.39
CD40-207ENST00000620709 RSF1Q96T23 1441 aaPredicted RBP29.97■■■□□ 2.39
CD40-207ENST00000620709 TOP2AP11388 1531 aaKnown RBP29.81■■■□□ 2.36
CD40-207ENST00000620709 MRC2Q9UBG0 1479 aa29.75■■■□□ 2.35
CD40-207ENST00000620709 CEP164Q9UPV0 1460 aa29.7■■■□□ 2.34
CD40-207ENST00000620709 FANCD2Q9BXW9 1451 aa29.67■■■□□ 2.34
CD40-207ENST00000620709 CFTRP13569 1480 aa29.65■■■□□ 2.34
CD40-207ENST00000620709 WDR62O43379 1518 aa29.63■■■□□ 2.33
CD40-207ENST00000620709 CCDC88BA6NC98 1476 aa29.5■■■□□ 2.31
CD40-207ENST00000620709 PRDM2Q13029 1718 aa29.4■■■□□ 2.3
CD40-207ENST00000620709 URB2Q14146 1524 aaKnown RBP29.4■■■□□ 2.3
CD40-207ENST00000620709 TOPBP1Q92547 1522 aa29.12■■■□□ 2.25
CD40-207ENST00000620709 IFT140Q96RY7 1462 aa29.07■■■□□ 2.24
CD40-207ENST00000620709 ABCC8Q09428 1581 aa29.05■■■□□ 2.24
CD40-207ENST00000620709 OSCARQ8IYS5 282 aa29.04■■■□□ 2.24
CD40-207ENST00000620709 TRIM41Q8WV44 630 aa29.04■■■□□ 2.24
CD40-207ENST00000620709 ZNF608Q9ULD9 1512 aaPredicted RBP29.03■■■□□ 2.24
CD40-207ENST00000620709 DNMBPQ6XZF7 1577 aa29.02■■■□□ 2.24
CD40-207ENST00000620709 SUPT5HO00267 1087 aaKnown RBP28.98■■■□□ 2.23
CD40-207ENST00000620709 EIF4G3O43432 1585 aaKnown RBP28.87■■■□□ 2.21
CD40-207ENST00000620709 POLA1P09884 1462 aaPredicted RBP28.83■■■□□ 2.21
CD40-207ENST00000620709 AQRO60306 1485 aaKnown RBP eCLIP28.82■■■□□ 2.2
CD40-207ENST00000620709 TARBP1Q13395 1621 aaKnown RBP28.82■■■□□ 2.2
CD40-207ENST00000620709 RAD54L2Q9Y4B4 1467 aa28.77■■■□□ 2.2
CD40-207ENST00000620709 SOGA1O94964 1423 aa28.75■■■□□ 2.19
CD40-207ENST00000620709 FGD5Q6ZNL6 1462 aa28.71■■■□□ 2.19
CD40-207ENST00000620709 FBLN2P98095 1184 aa28.7■■■□□ 2.19
CD40-207ENST00000620709 CUX1P39880 1505 aa28.69■■■□□ 2.18
CD40-207ENST00000620709 TDRD9Q8NDG6 1382 aaKnown RBP28.68■■■□□ 2.18
CD40-207ENST00000620709 CHD1O14646 1710 aa28.64■■■□□ 2.18
CD40-207ENST00000620709 RIMBP3CA6NJZ7 1639 aa28.62■■■□□ 2.17
CD40-207ENST00000620709 RIMBP3BA6NNM3 1639 aa28.62■■■□□ 2.17
CD40-207ENST00000620709 RIMBP3Q9UFD9 1639 aa28.62■■■□□ 2.17
CD40-207ENST00000620709 ARHGEF11O15085 1522 aa28.53■■■□□ 2.16
CD40-207ENST00000620709 SNAPC4Q5SXM2 1469 aa28.52■■■□□ 2.16
CD40-207ENST00000620709 WDR97A6NE52 1622 aa28.5■■■□□ 2.15
CD40-207ENST00000620709 CHMP7Q8WUX9 453 aaPredicted RBP28.46■■■□□ 2.15
CD40-207ENST00000620709 GRIN2BQ13224 1484 aa28.45■■■□□ 2.14
CD40-207ENST00000620709 CYB5RLQ6IPT4 315 aa28.41■■■□□ 2.14
CD40-207ENST00000620709 MAGI1Q96QZ7 1491 aaPredicted RBP28.39■■■□□ 2.14
CD40-207ENST00000620709 GAPVD1Q14C86 1478 aa28.38■■■□□ 2.13
CD40-207ENST00000620709 PBRM1Q86U86 1689 aa28.36■■■□□ 2.13
CD40-207ENST00000620709 ABCA10Q8WWZ4 1543 aa28.34■■■□□ 2.13
CD40-207ENST00000620709 SYNJ2O15056 1496 aa28.32■■■□□ 2.12
CD40-207ENST00000620709 WRNQ14191 1432 aaPredicted RBP eCLIP28.31■■■□□ 2.12
CD40-207ENST00000620709 SYNJ1O43426 1573 aa28.3■■■□□ 2.12
CD40-207ENST00000620709 ABCA5Q8WWZ7 1642 aa28.29■■■□□ 2.12
CD40-207ENST00000620709 TOP2BQ02880 1626 aa28.27■■■□□ 2.12
CD40-207ENST00000620709 BIVM-ERCC5R4GMW8 1640 aa28.26■■■□□ 2.11
CD40-207ENST00000620709 ARAP1Q96P48 1450 aa28.26■■■□□ 2.11
CD40-207ENST00000620709 CLASP1Q7Z460 1538 aa28.25■■■□□ 2.11
CD40-207ENST00000620709 TRHP20396 242 aaPredicted RBP28.08■■■□□ 2.09
CD40-207ENST00000620709 ADAMTS12P58397 1594 aa28.08■■■□□ 2.09
CD40-207ENST00000620709 GRIN2AQ12879 1464 aa28.08■■■□□ 2.09
CD40-207ENST00000620709 FHAD1B1AJZ9 1412 aa28.01■■■□□ 2.08
CD40-207ENST00000620709 ERICH3Q5RHP9 1530 aa27.99■■■□□ 2.07
CD40-207ENST00000620709 CEP170Q5SW79 1584 aa27.97■■■□□ 2.07
CD40-207ENST00000620709 NUP160Q12769 1436 aa27.93■■■□□ 2.06
CD40-207ENST00000620709 ERCC6L2Q5T890 1561 aa27.89■■■□□ 2.06
CD40-207ENST00000620709 SHROOM2Q13796 1616 aa27.77■■■□□ 2.04
CD40-207ENST00000620709 KIF27Q86VH2 1401 aa27.76■■■□□ 2.03
CD40-207ENST00000620709 JPH4Q96JJ6 628 aa27.73■■■□□ 2.03
CD40-207ENST00000620709 PRG4Q92954 1404 aaPredicted RBP27.73■■■□□ 2.03
CD40-207ENST00000620709 IGF1RP08069 1367 aa27.7■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms