Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC4P56524 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.07■□□□□ 0.16
HDAC4P56524 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC4P56524 AP002414.2-201ENST00000591780 3365 ntBASIC16.07■□□□□ 0.16
HDAC4P56524 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC4P56524 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC4P56524 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC4P56524 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.07■□□□□ 0.16
HDAC4P56524 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HDAC4P56524 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 LINC00528-201ENST00000600723 2160 ntBASIC16.06■□□□□ 0.16
HDAC4P56524 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 AL391825.1-201ENST00000457671 1364 ntBASIC16.06■□□□□ 0.16
HDAC4P56524 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.06■□□□□ 0.16
HDAC4P56524 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 AC123567.1-201ENST00000548294 1261 ntBASIC16.06■□□□□ 0.16
HDAC4P56524 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.06■□□□□ 0.16
HDAC4P56524 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 AC107373.2-201ENST00000607735 490 ntBASIC16.06■□□□□ 0.16
HDAC4P56524 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC4P56524 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.06■□□□□ 0.16
HDAC4P56524 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.06■□□□□ 0.16
HDAC4P56524 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC4P56524 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.05■□□□□ 0.16
HDAC4P56524 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
HDAC4P56524 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 AL353779.1-201ENST00000434793 351 ntBASIC16.05■□□□□ 0.16
HDAC4P56524 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.05■□□□□ 0.16
HDAC4P56524 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.05■□□□□ 0.16
HDAC4P56524 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 SAMD11P1-201ENST00000571429 661 ntBASIC16.05■□□□□ 0.16
HDAC4P56524 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms