RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 DCAF8L2P0C7V8 631 aa28.49■■■□□ 2.15
PHRF1-203ENST00000416188 NISCHQ9Y2I1 1504 aa27.75■■■□□ 2.03
PHRF1-203ENST00000416188 SUPT5HO00267 1087 aaKnown RBP26.14■■□□□ 1.77
PHRF1-203ENST00000416188 SHROOM4Q9ULL8 1493 aa26.1■■□□□ 1.77
PHRF1-203ENST00000416188 EHMT2Q96KQ7 1210 aa25.18■■□□□ 1.62
PHRF1-203ENST00000416188 FAM9AQ8IZU1 332 aaPredicted RBP24.9■■□□□ 1.58
PHRF1-203ENST00000416188 APLP2Q06481 763 aa24.67■■□□□ 1.54
PHRF1-203ENST00000416188 ABCC9O60706 1549 aa24.66■■□□□ 1.54
PHRF1-203ENST00000416188 RANGAP1P46060 587 aaPredicted RBP24.43■■□□□ 1.5
PHRF1-203ENST00000416188 PABPN1Q86U42 306 aaKnown RBP eCLIP24.32■■□□□ 1.48
PHRF1-203ENST00000416188 TRIM41Q8WV44 630 aa24.3■■□□□ 1.48
PHRF1-203ENST00000416188 ATP1B4Q9UN42 357 aaPredicted RBP24.28■■□□□ 1.48
PHRF1-203ENST00000416188 TTBK1Q5TCY1 1321 aaPredicted RBP24.13■■□□□ 1.45
PHRF1-203ENST00000416188 PELP1Q8IZL8 1130 aaKnown RBP24.12■■□□□ 1.45
PHRF1-203ENST00000416188 UBTFP17480 764 aaKnown RBP24.06■■□□□ 1.44
PHRF1-203ENST00000416188 PCGF6Q9BYE7 350 aa24.04■■□□□ 1.44
PHRF1-203ENST00000416188 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.71■■□□□ 1.39
PHRF1-203ENST00000416188 HNRNPUL2Q1KMD3 747 aaKnown RBP23.71■■□□□ 1.39
PHRF1-203ENST00000416188 MYT1LQ9UL68 1186 aa23.65■■□□□ 1.38
PHRF1-203ENST00000416188 CCER1Q8TC90 406 aaPredicted RBP23.58■■□□□ 1.36
PHRF1-203ENST00000416188 ZEB1P37275 1124 aaPredicted RBP23.46■■□□□ 1.35
PHRF1-203ENST00000416188 CENPBP07199 599 aaPredicted RBP23.44■■□□□ 1.34
PHRF1-203ENST00000416188 FBLN2P98095 1184 aa23.37■■□□□ 1.33
PHRF1-203ENST00000416188 PPARGC1BQ86YN6 1023 aaKnown RBP23.24■■□□□ 1.31
PHRF1-203ENST00000416188 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
PHRF1-203ENST00000416188 ERICH6Q7L0X2 663 aa23.17■■□□□ 1.3
PHRF1-203ENST00000416188 ITGAEP38570 1179 aa23.1■■□□□ 1.29
PHRF1-203ENST00000416188 YTHDC1Q96MU7 727 aaKnown RBP23.1■■□□□ 1.29
PHRF1-203ENST00000416188 CHIC1Q5VXU3 224 aa23.07■■□□□ 1.28
PHRF1-203ENST00000416188 CCDC180Q9P1Z9 1646 aa23.03■■□□□ 1.28
PHRF1-203ENST00000416188 NEFLP07196 543 aa22.96■■□□□ 1.27
PHRF1-203ENST00000416188 RB1CC1Q8TDY2 1594 aa22.93■■□□□ 1.26
PHRF1-203ENST00000416188 TRIM26Q12899 539 aaPredicted RBP22.92■■□□□ 1.26
PHRF1-203ENST00000416188 LOC105371045A0A1W2PR82 267 aa22.87■■□□□ 1.25
PHRF1-203ENST00000416188 ZCCHC6Q5VYS8 1495 aaKnown RBP22.86■■□□□ 1.25
PHRF1-203ENST00000416188 HRCP23327 699 aa22.84■■□□□ 1.25
PHRF1-203ENST00000416188 ARID3CA6NKF2 412 aa22.68■■□□□ 1.22
PHRF1-203ENST00000416188 FAM50AQ14320 339 aaKnown RBP22.66■■□□□ 1.22
PHRF1-203ENST00000416188 P3H3Q8IVL6 736 aa22.64■■□□□ 1.21
PHRF1-203ENST00000416188 POLR3GLQ9BT43 218 aa22.63■■□□□ 1.21
PHRF1-203ENST00000416188 NPM1P06748 294 aaKnown RBP eCLIP22.62■■□□□ 1.21
PHRF1-203ENST00000416188 NACADO15069 1562 aa22.59■■□□□ 1.21
PHRF1-203ENST00000416188 MYT1Q01538 1121 aa22.54■■□□□ 1.2
PHRF1-203ENST00000416188 TRIM52Q96A61 297 aa22.5■■□□□ 1.19
PHRF1-203ENST00000416188 CNGB1Q14028 1251 aaPredicted RBP22.48■■□□□ 1.19
PHRF1-203ENST00000416188 SLC4A1APQ9BWU0 796 aaKnown RBP22.48■■□□□ 1.19
PHRF1-203ENST00000416188 CSRNP3Q8WYN3 585 aa22.46■■□□□ 1.19
PHRF1-203ENST00000416188 CHMP7Q8WUX9 453 aaPredicted RBP22.45■■□□□ 1.18
PHRF1-203ENST00000416188 CDK11AQ9UQ88 783 aaPredicted RBP22.41■■□□□ 1.18
PHRF1-203ENST00000416188 ZNF777Q9ULD5 760 aaPredicted RBP22.39■■□□□ 1.17
PHRF1-203ENST00000416188 ESF1Q9H501 851 aaKnown RBP22.39■■□□□ 1.17
PHRF1-203ENST00000416188 ERCC6Q03468 1493 aa22.34■■□□□ 1.17
PHRF1-203ENST00000416188 BCANQ96GW7 911 aa22.34■■□□□ 1.17
PHRF1-203ENST00000416188 PLPPR3Q6T4P5 718 aa22.29■■□□□ 1.16
PHRF1-203ENST00000416188 BAZ1BQ9UIG0 1483 aaKnown RBP22.26■■□□□ 1.15
PHRF1-203ENST00000416188 DAXXQ9UER7 740 aaPredicted RBP22.26■■□□□ 1.15
PHRF1-203ENST00000416188 DIEXFQ68CQ4 756 aaKnown RBP22.16■■□□□ 1.14
PHRF1-203ENST00000416188 ZNF326Q5BKZ1 582 aaKnown RBP22.15■■□□□ 1.14
PHRF1-203ENST00000416188 NEUROD1Q13562 356 aa22.09■■□□□ 1.13
PHRF1-203ENST00000416188 STAG3Q9UJ98 1225 aa22.06■■□□□ 1.12
PHRF1-203ENST00000416188 RSF1Q96T23 1441 aaPredicted RBP22■■□□□ 1.11
PHRF1-203ENST00000416188 CHGAP10645 457 aaKnown RBP21.97■■□□□ 1.11
PHRF1-203ENST00000416188 KCNH8Q96L42 1107 aa21.96■■□□□ 1.11
PHRF1-203ENST00000416188 BAZ1AQ9NRL2 1556 aaPredicted RBP21.9■■□□□ 1.1
PHRF1-203ENST00000416188 CLSPNQ9HAW4 1339 aa21.89■■□□□ 1.1
PHRF1-203ENST00000416188 TRHP20396 242 aaPredicted RBP21.88■■□□□ 1.09
PHRF1-203ENST00000416188 DCAF1Q9Y4B6 1507 aa21.87■■□□□ 1.09
PHRF1-203ENST00000416188 TSPY4P0CV99 314 aa21.83■■□□□ 1.08
PHRF1-203ENST00000416188 TSPY10P0CW01 314 aa21.83■■□□□ 1.08
PHRF1-203ENST00000416188 CECR2Q9BXF3 1484 aa21.83■■□□□ 1.08
PHRF1-203ENST00000416188 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.82■■□□□ 1.086e-8■■■□□ 15.2
PHRF1-203ENST00000416188 PLEKHD1A6NEE1 506 aa21.81■■□□□ 1.08
PHRF1-203ENST00000416188 WRNQ14191 1432 aaPredicted RBP eCLIP21.8■■□□□ 1.08
PHRF1-203ENST00000416188 GTF3C3Q9Y5Q9 886 aa21.78■■□□□ 1.08
PHRF1-203ENST00000416188 ARID4BQ4LE39 1312 aaPredicted RBP21.76■■□□□ 1.07
PHRF1-203ENST00000416188 MTUS2Q5JR59 1369 aa21.76■■□□□ 1.07
PHRF1-203ENST00000416188 CHIC2Q9UKJ5 165 aa21.75■■□□□ 1.07
PHRF1-203ENST00000416188 ZNF316A6NFI3 1004 aaPredicted RBP21.75■■□□□ 1.07
PHRF1-203ENST00000416188 PDS5BQ9NTI5 1447 aa21.74■■□□□ 1.07
PHRF1-203ENST00000416188 RTL5Q5HYW3 569 aaPredicted RBP21.73■■□□□ 1.07
PHRF1-203ENST00000416188 ANP32CO43423 234 aa21.72■■□□□ 1.07
PHRF1-203ENST00000416188 KIF27Q86VH2 1401 aa21.71■■□□□ 1.07
PHRF1-203ENST00000416188 SLC24A1O60721 1099 aa21.68■■□□□ 1.06
PHRF1-203ENST00000416188 SMARCA2P51531 1590 aa21.63■■□□□ 1.05
PHRF1-203ENST00000416188 NEFMP07197 916 aa21.56■■□□□ 1.04
PHRF1-203ENST00000416188 CLIP1P30622 1438 aa21.55■■□□□ 1.04
PHRF1-203ENST00000416188 PPP1R15AO75807 674 aaPredicted RBP21.52■■□□□ 1.04
PHRF1-203ENST00000416188 EEA1Q15075 1411 aa21.52■■□□□ 1.04
PHRF1-203ENST00000416188 CUX2O14529 1486 aa21.5■■□□□ 1.03
PHRF1-203ENST00000416188 CFDP1Q9UEE9 299 aaPredicted RBP21.48■■□□□ 1.03
PHRF1-203ENST00000416188 ACIN1Q9UKV3 1341 aaKnown RBP21.48■■□□□ 1.03
PHRF1-203ENST00000416188 SENP3Q9H4L4 574 aaPredicted RBP21.47■■□□□ 1.03
PHRF1-203ENST00000416188 MROH2BQ7Z745 1585 aa21.47■■□□□ 1.03
PHRF1-203ENST00000416188 SCAF1Q9H7N4 1312 aaKnown RBP21.45■■□□□ 1.03
PHRF1-203ENST00000416188 C14orf37Q86TY3 774 aa21.45■■□□□ 1.03
PHRF1-203ENST00000416188 EIF4G1Q04637 1599 aaKnown RBP21.45■■□□□ 1.02
PHRF1-203ENST00000416188 MYO15BQ96JP2 1530 aa21.44■■□□□ 1.02
PHRF1-203ENST00000416188 GOLGA3Q08378 1498 aa21.43■■□□□ 1.02
PHRF1-203ENST00000416188 TDRD9Q8NDG6 1382 aaKnown RBP21.43■■□□□ 1.02
PHRF1-203ENST00000416188 BCL11AQ9H165 835 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms