RNA–Protein interactions for RNA: ENST00000264187.6

NID1-201, Transcript of nidogen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NID1, Length 5,864 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NID1-201ENST00000264187 DCAF8L2P0C7V8 631 aa25.88■■□□□ 1.73
NID1-201ENST00000264187 SUPT5HO00267 1087 aaKnown RBP24.53■■□□□ 1.52
NID1-201ENST00000264187 EHMT2Q96KQ7 1210 aa24.48■■□□□ 1.51
NID1-201ENST00000264187 PELP1Q8IZL8 1130 aaKnown RBP24.34■■□□□ 1.49
NID1-201ENST00000264187 SHROOM4Q9ULL8 1493 aa23.77■■□□□ 1.4
NID1-201ENST00000264187 TTBK1Q5TCY1 1321 aaPredicted RBP23.66■■□□□ 1.38
NID1-201ENST00000264187 ERICH6Q7L0X2 663 aa23.66■■□□□ 1.38
NID1-201ENST00000264187 APLP2Q06481 763 aa23.64■■□□□ 1.37
NID1-201ENST00000264187 FAM9AQ8IZU1 332 aaPredicted RBP23.38■■□□□ 1.33
NID1-201ENST00000264187 PCGF6Q9BYE7 350 aa23.33■■□□□ 1.33
NID1-201ENST00000264187 CCER1Q8TC90 406 aaPredicted RBP23.27■■□□□ 1.32
NID1-201ENST00000264187 RANGAP1P46060 587 aaPredicted RBP23.21■■□□□ 1.31
NID1-201ENST00000264187 CENPBP07199 599 aaPredicted RBP23.17■■□□□ 1.3
NID1-201ENST00000264187 YTHDC1Q96MU7 727 aaKnown RBP22.98■■□□□ 1.27
NID1-201ENST00000264187 ATP1B4Q9UN42 357 aaPredicted RBP22.96■■□□□ 1.27
NID1-201ENST00000264187 MYT1Q01538 1121 aa22.94■■□□□ 1.26
NID1-201ENST00000264187 NEFLP07196 543 aa22.86■■□□□ 1.25
NID1-201ENST00000264187 ZEB1P37275 1124 aaPredicted RBP22.64■■□□□ 1.22
NID1-201ENST00000264187 DAXXQ9UER7 740 aaPredicted RBP22.47■■□□□ 1.19
NID1-201ENST00000264187 UBTFP17480 764 aaKnown RBP22.47■■□□□ 1.19
NID1-201ENST00000264187 PPARGC1BQ86YN6 1023 aaKnown RBP22.46■■□□□ 1.19
NID1-201ENST00000264187 TRIM41Q8WV44 630 aa22.45■■□□□ 1.18
NID1-201ENST00000264187 POLR3GLQ9BT43 218 aa22.37■■□□□ 1.17
NID1-201ENST00000264187 CNGB1Q14028 1251 aaPredicted RBP22.33■■□□□ 1.17
NID1-201ENST00000264187 NISCHQ9Y2I1 1504 aa22.22■■□□□ 1.15
NID1-201ENST00000264187 MYT1LQ9UL68 1186 aa22.15■■□□□ 1.14
NID1-201ENST00000264187 ITGAEP38570 1179 aa22.14■■□□□ 1.13
NID1-201ENST00000264187 CHIC1Q5VXU3 224 aa22.03■■□□□ 1.12
NID1-201ENST00000264187 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.96■■□□□ 1.11
NID1-201ENST00000264187 HNRNPUL2Q1KMD3 747 aaKnown RBP21.96■■□□□ 1.11
NID1-201ENST00000264187 SLC4A1APQ9BWU0 796 aaKnown RBP21.95■■□□□ 1.1
NID1-201ENST00000264187 ZNF316A6NFI3 1004 aaPredicted RBP21.92■■□□□ 1.1
NID1-201ENST00000264187 CLSPNQ9HAW4 1339 aa21.91■■□□□ 1.1
NID1-201ENST00000264187 RTL5Q5HYW3 569 aaPredicted RBP21.9■■□□□ 1.1
NID1-201ENST00000264187 HRCP23327 699 aa21.88■■□□□ 1.09
NID1-201ENST00000264187 TRIM26Q12899 539 aaPredicted RBP21.8■■□□□ 1.08
NID1-201ENST00000264187 BCANQ96GW7 911 aa21.61■■□□□ 1.05
NID1-201ENST00000264187 BCL11AQ9H165 835 aa21.56■■□□□ 1.04
NID1-201ENST00000264187 LOC105371045A0A1W2PR82 267 aa21.52■■□□□ 1.04
NID1-201ENST00000264187 DIEXFQ68CQ4 756 aaKnown RBP21.45■■□□□ 1.02
NID1-201ENST00000264187 SLC24A1O60721 1099 aa21.34■■□□□ 1.01
NID1-201ENST00000264187 ZBTB47Q9UFB7 747 aaPredicted RBP21.32■■□□□ 1
NID1-201ENST00000264187 NEUROD1Q13562 356 aa21.31■■□□□ 1
NID1-201ENST00000264187 TRIM52Q96A61 297 aa21.29■■□□□ 1
NID1-201ENST00000264187 FAM50AQ14320 339 aaKnown RBP21.29■■□□□ 1
NID1-201ENST00000264187 ZNF326Q5BKZ1 582 aaKnown RBP21.26■□□□□ 0.99
NID1-201ENST00000264187 GTF3C3Q9Y5Q9 886 aa21.25■□□□□ 0.99
NID1-201ENST00000264187 CDK11AQ9UQ88 783 aaPredicted RBP21.23■□□□□ 0.99
NID1-201ENST00000264187 CANXP27824 592 aaKnown RBP21.16■□□□□ 0.98
NID1-201ENST00000264187 EIF5BO60841 1220 aaKnown RBP21.12■□□□□ 0.97
NID1-201ENST00000264187 ANP32CO43423 234 aa21.08■□□□□ 0.97
NID1-201ENST00000264187 NPM2Q86SE8 214 aaKnown RBP21.08■□□□□ 0.97
NID1-201ENST00000264187 ANP32AP39687 249 aaKnown RBP20.93■□□□□ 0.94
NID1-201ENST00000264187 NEFMP07197 916 aa20.87■□□□□ 0.93
NID1-201ENST00000264187 ANP32BQ92688 251 aaKnown RBP20.8■□□□□ 0.92
NID1-201ENST00000264187 HSP90AA1P07900 732 aaKnown RBP20.8■□□□□ 0.92
NID1-201ENST00000264187 ARXQ96QS3 562 aa20.77■□□□□ 0.92
NID1-201ENST00000264187 ARID3CA6NKF2 412 aa20.74■□□□□ 0.91
NID1-201ENST00000264187 FBLN2P98095 1184 aa20.71■□□□□ 0.91
NID1-201ENST00000264187 FKBP8Q14318 412 aa20.65■□□□□ 0.9
NID1-201ENST00000264187 ACIN1Q9UKV3 1341 aaKnown RBP20.64■□□□□ 0.9
NID1-201ENST00000264187 NBR1Q14596 966 aa20.64■□□□□ 0.89
NID1-201ENST00000264187 SALL2Q9Y467 1007 aaPredicted RBP20.63■□□□□ 0.89
NID1-201ENST00000264187 PLPPR3Q6T4P5 718 aa20.58■□□□□ 0.88
NID1-201ENST00000264187 GLIPR1L2Q4G1C9 344 aa20.57■□□□□ 0.88
NID1-201ENST00000264187 P3H3Q8IVL6 736 aa20.56■□□□□ 0.88
NID1-201ENST00000264187 UPF2Q9HAU5 1272 aaKnown RBP20.55■□□□□ 0.88
NID1-201ENST00000264187 ZNF777Q9ULD5 760 aaPredicted RBP20.55■□□□□ 0.88
NID1-201ENST00000264187 FAM9BQ8IZU0 186 aa20.5■□□□□ 0.87
NID1-201ENST00000264187 HNRNPUQ00839 825 aaKnown RBP eCLIP20.48■□□□□ 0.87
NID1-201ENST00000264187 CHGAP10645 457 aaKnown RBP20.48■□□□□ 0.87
NID1-201ENST00000264187 PABPN1Q86U42 306 aaKnown RBP eCLIP20.38■□□□□ 0.85
NID1-201ENST00000264187 STAG3Q9UJ98 1225 aa20.37■□□□□ 0.85
NID1-201ENST00000264187 CCDC136Q96JN2 1154 aa20.36■□□□□ 0.85
NID1-201ENST00000264187 DDX10Q13206 875 aaKnown RBP20.34■□□□□ 0.85
NID1-201ENST00000264187 ESF1Q9H501 851 aaKnown RBP20.34■□□□□ 0.85
NID1-201ENST00000264187 CDK11BP21127 795 aaKnown RBP20.33■□□□□ 0.84
NID1-201ENST00000264187 IRX6P78412 446 aaPredicted RBP20.32■□□□□ 0.84
NID1-201ENST00000264187 A0A0G2JS52 829 aa20.3■□□□□ 0.84
NID1-201ENST00000264187 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.27■□□□□ 0.84
NID1-201ENST00000264187 SCAF1Q9H7N4 1312 aaKnown RBP20.26■□□□□ 0.83
NID1-201ENST00000264187 PLEKHG5O94827 1062 aa20.25■□□□□ 0.83
NID1-201ENST00000264187 TMC1Q8TDI8 760 aa20.22■□□□□ 0.83
NID1-201ENST00000264187 TONSLQ96HA7 1378 aa20.21■□□□□ 0.83
NID1-201ENST00000264187 TPRNQ4KMQ1 711 aa20.2■□□□□ 0.82
NID1-201ENST00000264187 SENP3Q9H4L4 574 aaPredicted RBP20.19■□□□□ 0.82
NID1-201ENST00000264187 WDR43Q15061 677 aaKnown RBP eCLIP20.16■□□□□ 0.82
NID1-201ENST00000264187 TULP1O00294 542 aaPredicted RBP20.15■□□□□ 0.82
NID1-201ENST00000264187 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.15■□□□□ 0.82
NID1-201ENST00000264187 ZBTB7CA1YPR0 619 aa20.14■□□□□ 0.81
NID1-201ENST00000264187 TRIM44Q96DX7 344 aaPredicted RBP20.12■□□□□ 0.81
NID1-201ENST00000264187 SENP3-EIF4A1A0A087X0R7 540 aa20.11■□□□□ 0.81
NID1-201ENST00000264187 NCLP19338 710 aaKnown RBP20.1■□□□□ 0.81
NID1-201ENST00000264187 MRS2Q9HD23 443 aa20.1■□□□□ 0.81
NID1-201ENST00000264187 KDM2AQ9Y2K7 1162 aa20.1■□□□□ 0.81
NID1-201ENST00000264187 MYH16Q9H6N6 1097 aa20.09■□□□□ 0.81
NID1-201ENST00000264187 CHIC2Q9UKJ5 165 aa20.09■□□□□ 0.81
NID1-201ENST00000264187 HIRIP3Q9BW71 556 aaPredicted RBP20.08■□□□□ 0.81
NID1-201ENST00000264187 PTMAP06454 111 aaKnown RBP20.02■□□□□ 0.79
NID1-201ENST00000264187 TAOK2Q9UL54 1235 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms