RNA–Protein interactions for RNA: ENST00000342740.5

CARMIL3-201, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CARMIL3, Length 4,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-201ENST00000342740 NISCHQ9Y2I1 1504 aa28.05■■■□□ 2.08
CARMIL3-201ENST00000342740 DCAF8L2P0C7V8 631 aa27.82■■■□□ 2.04
CARMIL3-201ENST00000342740 SUPT5HO00267 1087 aaKnown RBP26.48■■□□□ 1.83
CARMIL3-201ENST00000342740 SHROOM4Q9ULL8 1493 aa26.3■■□□□ 1.8
CARMIL3-201ENST00000342740 EHMT2Q96KQ7 1210 aa25.25■■□□□ 1.63
CARMIL3-201ENST00000342740 FAM9AQ8IZU1 332 aaPredicted RBP24.86■■□□□ 1.57
CARMIL3-201ENST00000342740 APLP2Q06481 763 aa24.59■■□□□ 1.53
CARMIL3-201ENST00000342740 TRIM41Q8WV44 630 aa24.58■■□□□ 1.53
CARMIL3-201ENST00000342740 PCGF6Q9BYE7 350 aa24.41■■□□□ 1.5
CARMIL3-201ENST00000342740 TTBK1Q5TCY1 1321 aaPredicted RBP24.33■■□□□ 1.49
CARMIL3-201ENST00000342740 RANGAP1P46060 587 aaPredicted RBP24.22■■□□□ 1.47
CARMIL3-201ENST00000342740 UBTFP17480 764 aaKnown RBP24.11■■□□□ 1.45
CARMIL3-201ENST00000342740 CHIC1Q5VXU3 224 aa23.93■■□□□ 1.42
CARMIL3-201ENST00000342740 ABCC9O60706 1549 aa23.92■■□□□ 1.42
CARMIL3-201ENST00000342740 ATP1B4Q9UN42 357 aaPredicted RBP23.88■■□□□ 1.41
CARMIL3-201ENST00000342740 CCER1Q8TC90 406 aaPredicted RBP23.82■■□□□ 1.4
CARMIL3-201ENST00000342740 ZEB1P37275 1124 aaPredicted RBP23.78■■□□□ 1.4
CARMIL3-201ENST00000342740 LOC105371045A0A1W2PR82 267 aa23.74■■□□□ 1.39
CARMIL3-201ENST00000342740 PPARGC1BQ86YN6 1023 aaKnown RBP23.72■■□□□ 1.39
CARMIL3-201ENST00000342740 PABPN1Q86U42 306 aaKnown RBP eCLIP23.64■■□□□ 1.38
CARMIL3-201ENST00000342740 TRIM26Q12899 539 aaPredicted RBP23.56■■□□□ 1.36
CARMIL3-201ENST00000342740 PELP1Q8IZL8 1130 aaKnown RBP23.5■■□□□ 1.35
CARMIL3-201ENST00000342740 CENPBP07199 599 aaPredicted RBP23.28■■□□□ 1.32
CARMIL3-201ENST00000342740 ZCCHC6Q5VYS8 1495 aaKnown RBP23.26■■□□□ 1.31
CARMIL3-201ENST00000342740 HRCP23327 699 aa23.21■■□□□ 1.31
CARMIL3-201ENST00000342740 ITGAEP38570 1179 aa23.2■■□□□ 1.3
CARMIL3-201ENST00000342740 HNRNPUL2Q1KMD3 747 aaKnown RBP23.13■■□□□ 1.29
CARMIL3-201ENST00000342740 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.13■■□□□ 1.29
CARMIL3-201ENST00000342740 CCDC180Q9P1Z9 1646 aa23.05■■□□□ 1.28
CARMIL3-201ENST00000342740 SCRIBQ14160 1630 aa22.98■■□□□ 1.27
CARMIL3-201ENST00000342740 YTHDC1Q96MU7 727 aaKnown RBP22.96■■□□□ 1.27
CARMIL3-201ENST00000342740 CSRNP3Q8WYN3 585 aa22.79■■□□□ 1.24
CARMIL3-201ENST00000342740 MYT1LQ9UL68 1186 aa22.78■■□□□ 1.24
CARMIL3-201ENST00000342740 FAM50AQ14320 339 aaKnown RBP22.7■■□□□ 1.23
CARMIL3-201ENST00000342740 NEFLP07196 543 aa22.7■■□□□ 1.22
CARMIL3-201ENST00000342740 POLR3GLQ9BT43 218 aa22.6■■□□□ 1.21
CARMIL3-201ENST00000342740 FBLN2P98095 1184 aa22.54■■□□□ 1.2
CARMIL3-201ENST00000342740 P3H3Q8IVL6 736 aa22.5■■□□□ 1.19
CARMIL3-201ENST00000342740 DIEXFQ68CQ4 756 aaKnown RBP22.47■■□□□ 1.19
CARMIL3-201ENST00000342740 RB1CC1Q8TDY2 1594 aa22.47■■□□□ 1.19
CARMIL3-201ENST00000342740 TRIM52Q96A61 297 aa22.45■■□□□ 1.18
CARMIL3-201ENST00000342740 RSF1Q96T23 1441 aaPredicted RBP22.43■■□□□ 1.18
CARMIL3-201ENST00000342740 ERICH6Q7L0X2 663 aa22.43■■□□□ 1.18
CARMIL3-201ENST00000342740 CNGB1Q14028 1251 aaPredicted RBP22.41■■□□□ 1.18
CARMIL3-201ENST00000342740 NEUROD1Q13562 356 aa22.4■■□□□ 1.18
CARMIL3-201ENST00000342740 NACADO15069 1562 aa22.37■■□□□ 1.17
CARMIL3-201ENST00000342740 ARID3CA6NKF2 412 aa22.3■■□□□ 1.16
CARMIL3-201ENST00000342740 DCAF1Q9Y4B6 1507 aa22.24■■□□□ 1.15
CARMIL3-201ENST00000342740 ZNF316A6NFI3 1004 aaPredicted RBP22.12■■□□□ 1.13
CARMIL3-201ENST00000342740 ZNF326Q5BKZ1 582 aaKnown RBP22.11■■□□□ 1.13
CARMIL3-201ENST00000342740 CDK11AQ9UQ88 783 aaPredicted RBP22.1■■□□□ 1.13
CARMIL3-201ENST00000342740 SLC4A1APQ9BWU0 796 aaKnown RBP22.09■■□□□ 1.13
CARMIL3-201ENST00000342740 MYO15BQ96JP2 1530 aa22.08■■□□□ 1.13
CARMIL3-201ENST00000342740 ZNF777Q9ULD5 760 aaPredicted RBP22.06■■□□□ 1.12
CARMIL3-201ENST00000342740 CECR2Q9BXF3 1484 aa22.06■■□□□ 1.12
CARMIL3-201ENST00000342740 BAZ1BQ9UIG0 1483 aaKnown RBP22.01■■□□□ 1.11
CARMIL3-201ENST00000342740 WRNQ14191 1432 aaPredicted RBP eCLIP21.98■■□□□ 1.11
CARMIL3-201ENST00000342740 BAZ1AQ9NRL2 1556 aaPredicted RBP21.97■■□□□ 1.11
CARMIL3-201ENST00000342740 ANP32CO43423 234 aa21.97■■□□□ 1.11
CARMIL3-201ENST00000342740 CLIP1P30622 1438 aa21.96■■□□□ 1.11
CARMIL3-201ENST00000342740 EEA1Q15075 1411 aa21.95■■□□□ 1.1
CARMIL3-201ENST00000342740 GOLGA3Q08378 1498 aa21.84■■□□□ 1.09
CARMIL3-201ENST00000342740 CEP162Q5TB80 1403 aa21.84■■□□□ 1.09
CARMIL3-201ENST00000342740 CHMP7Q8WUX9 453 aaPredicted RBP21.82■■□□□ 1.08
CARMIL3-201ENST00000342740 CHIC2Q9UKJ5 165 aa21.79■■□□□ 1.08
CARMIL3-201ENST00000342740 GTF3C3Q9Y5Q9 886 aa21.79■■□□□ 1.08
CARMIL3-201ENST00000342740 MTUS2Q5JR59 1369 aa21.78■■□□□ 1.08
CARMIL3-201ENST00000342740 TONSLQ96HA7 1378 aa21.76■■□□□ 1.07
CARMIL3-201ENST00000342740 MROH2BQ7Z745 1585 aa21.76■■□□□ 1.07
CARMIL3-201ENST00000342740 KIF27Q86VH2 1401 aa21.75■■□□□ 1.07
CARMIL3-201ENST00000342740 DAXXQ9UER7 740 aaPredicted RBP21.75■■□□□ 1.07
CARMIL3-201ENST00000342740 TNIKQ9UKE5 1360 aa21.74■■□□□ 1.07
CARMIL3-201ENST00000342740 CEP164Q9UPV0 1460 aa21.68■■□□□ 1.06
CARMIL3-201ENST00000342740 NPM1P06748 294 aaKnown RBP eCLIP21.67■■□□□ 1.06
CARMIL3-201ENST00000342740 BCANQ96GW7 911 aa21.67■■□□□ 1.06
CARMIL3-201ENST00000342740 TSPY4P0CV99 314 aa21.63■■□□□ 1.05
CARMIL3-201ENST00000342740 TSPY10P0CW01 314 aa21.63■■□□□ 1.05
CARMIL3-201ENST00000342740 ACIN1Q9UKV3 1341 aaKnown RBP21.61■■□□□ 1.05
CARMIL3-201ENST00000342740 CCDC88BA6NC98 1476 aa21.6■■□□□ 1.05
CARMIL3-201ENST00000342740 SOGA1O94964 1423 aa21.59■■□□□ 1.05
CARMIL3-201ENST00000342740 DDX10Q13206 875 aaKnown RBP21.59■■□□□ 1.05
CARMIL3-201ENST00000342740 CLSPNQ9HAW4 1339 aa21.57■■□□□ 1.04
CARMIL3-201ENST00000342740 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.55■■□□□ 1.04
CARMIL3-201ENST00000342740 RRP7BPQ9NSQ0 103 aa21.53■■□□□ 1.04
CARMIL3-201ENST00000342740 CHGAP10645 457 aaKnown RBP21.52■■□□□ 1.04
CARMIL3-201ENST00000342740 MYT1Q01538 1121 aa21.51■■□□□ 1.03
CARMIL3-201ENST00000342740 PLEKHD1A6NEE1 506 aa21.49■■□□□ 1.03
CARMIL3-201ENST00000342740 ESF1Q9H501 851 aaKnown RBP21.45■■□□□ 1.02
CARMIL3-201ENST00000342740 CARMIL1Q5VZK9 1371 aa21.44■■□□□ 1.02
CARMIL3-201ENST00000342740 CUX2O14529 1486 aa21.44■■□□□ 1.02
CARMIL3-201ENST00000342740 ABCC8Q09428 1581 aa21.44■■□□□ 1.02
CARMIL3-201ENST00000342740 SMARCA2P51531 1590 aa21.43■■□□□ 1.02
CARMIL3-201ENST00000342740 KCNH8Q96L42 1107 aa21.43■■□□□ 1.02
CARMIL3-201ENST00000342740 KDM2AQ9Y2K7 1162 aa21.4■■□□□ 1.02
CARMIL3-201ENST00000342740 WIZO95785 1651 aa21.39■■□□□ 1.02
CARMIL3-201ENST00000342740 HIRIP3Q9BW71 556 aaPredicted RBP21.39■■□□□ 1.01
CARMIL3-201ENST00000342740 STAG3Q9UJ98 1225 aa21.38■■□□□ 1.01
CARMIL3-201ENST00000342740 ERCC6Q03468 1493 aa21.37■■□□□ 1.01
CARMIL3-201ENST00000342740 CFDP1Q9UEE9 299 aaPredicted RBP21.36■■□□□ 1.01
CARMIL3-201ENST00000342740 HNRNPUQ00839 825 aaKnown RBP eCLIP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms