Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC10.25□□□□□ -0.772e-6■■■□□ 15.5
SFPQP23246 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC10.06□□□□□ -0.82e-6■■■□□ 15.5
SFPQP23246 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC9.82□□□□□ -0.842e-6■■■□□ 15.5
SFPQP23246 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.672e-6■■■□□ 15.4
SFPQP23246 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.442e-6■■■□□ 15.4
SFPQP23246 MEGF6-205ENST00000485002 4705 ntTSL 518.51■□□□□ 0.552e-6■■■□□ 15.4
SFPQP23246 AFF1-206ENST00000507468 1486 ntTSL 1 (best)23.08■■□□□ 1.293e-6■■■□□ 15.4
SFPQP23246 AFF1-204ENST00000503477 1478 ntTSL 218.28■□□□□ 0.523e-6■■■□□ 15.4
SFPQP23246 AFF1-202ENST00000395146 9285 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.393e-6■■■□□ 15.4
SFPQP23246 TNS3-205ENST00000434451 560 ntTSL 518.6■□□□□ 0.573e-6■■■□□ 15.4
SFPQP23246 PLCXD1-206ENST00000430923 587 ntAPPRIS ALT2 TSL 217.12■□□□□ 0.339e-8■■■□□ 15.4
SFPQP23246 PLCXD1-211ENST00000484611 540 ntTSL 416.89■□□□□ 0.299e-8■■■□□ 15.4
SFPQP23246 PLCXD1-203ENST00000399012 5287 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.159e-8■■■□□ 15.4
SFPQP23246 SEPT9-241ENST00000591934 553 ntTSL 419.33■□□□□ 0.687e-7■■■□□ 15.4
SFPQP23246 SEPT9-231ENST00000590595 569 ntTSL 318.03■□□□□ 0.487e-7■■■□□ 15.4
SFPQP23246 LRMDA-201ENST00000372499 899 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.776e-7■■■□□ 15.4
SFPQP23246 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC15.55■□□□□ 0.084e-6■■■□□ 15.4
SFPQP23246 MTSS1-205ENST00000518547 4944 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.354e-6■■■□□ 15.4
SFPQP23246 MTSS1-202ENST00000378017 4458 ntTSL 1 (best) BASIC12.09□□□□□ -0.474e-6■■■□□ 15.4
SFPQP23246 MTSS1-212ENST00000522162 553 ntTSL 47.32□□□□□ -1.244e-6■■■□□ 15.4
SFPQP23246 TBCD-207ENST00000571796 1940 ntTSL 1 (best)20.72■□□□□ 0.913e-6■■■□□ 15.3
SFPQP23246 TBCD-225ENST00000576996 827 ntTSL 516.33■□□□□ 0.23e-6■■■□□ 15.3
SFPQP23246 TBCD-224ENST00000576760 1059 ntTSL 513.44□□□□□ -0.263e-6■■■□□ 15.3
SFPQP23246 TBCD-210ENST00000572953 702 ntTSL 512.71□□□□□ -0.373e-6■■■□□ 15.3
SFPQP23246 TBCD-213ENST00000574422 879 ntTSL 212.51□□□□□ -0.413e-6■■■□□ 15.3
SFPQP23246 TBCD-206ENST00000571712 850 ntTSL 512.28□□□□□ -0.443e-6■■■□□ 15.3
SFPQP23246 TBCD-205ENST00000571618 775 ntTSL 311.99□□□□□ -0.493e-6■■■□□ 15.3
SFPQP23246 TBCD-217ENST00000574975 867 ntTSL 511.69□□□□□ -0.543e-6■■■□□ 15.3
SFPQP23246 TBCD-219ENST00000576160 942 ntTSL 511.16□□□□□ -0.623e-6■■■□□ 15.3
SFPQP23246 CHN2-203ENST00000409350 539 ntTSL 415.09■□□□□ 0.011e-6■■■□□ 15.3
SFPQP23246 CHN2-213ENST00000439384 578 ntTSL 514.03□□□□□ -0.161e-6■■■□□ 15.3
SFPQP23246 CHN2-205ENST00000409964 547 ntTSL 411.73□□□□□ -0.531e-6■■■□□ 15.3
SFPQP23246 EIF4A1-205ENST00000577738 531 ntTSL 214.19□□□□□ -0.141e-6■■■□□ 15.3
SFPQP23246 SDC2-205ENST00000520233 563 ntTSL 419.56■□□□□ 0.721e-6■■■□□ 15.3
SFPQP23246 SDC2-203ENST00000519587 557 ntTSL 415.57■□□□□ 0.081e-6■■■□□ 15.3
SFPQP23246 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.53e-6■■■□□ 15.2
SFPQP23246 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.353e-6■■■□□ 15.2
SFPQP23246 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.313e-6■■■□□ 15.2
SFPQP23246 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.719e-7■■■□□ 15.2
SFPQP23246 SLC7A5-203ENST00000565644 3983 ntTSL 1 (best) BASIC13.07□□□□□ -0.329e-7■■■□□ 15.2
SFPQP23246 UTRN-203ENST00000367526 3220 ntTSL 5 BASIC10.57□□□□□ -0.723e-6■■■□□ 15.2
SFPQP23246 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.5■□□□□ 0.871e-6■■■□□ 15.2
SFPQP23246 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.581e-6■■■□□ 15.2
SFPQP23246 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.87■□□□□ 0.451e-6■■■□□ 15.2
SFPQP23246 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.261e-6■■■□□ 15.2
SFPQP23246 MSI2-215ENST00000582453 496 ntTSL 33.53□□□□□ -1.841e-6■■■□□ 15.2
SFPQP23246 SRCIN1-211ENST00000612431 1431 ntAPPRIS ALT2 TSL 1 (best)25.79■■□□□ 1.729e-7■■■□□ 15.2
SFPQP23246 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.229e-7■■■□□ 15.2
SFPQP23246 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.589e-7■■■□□ 15.2
SFPQP23246 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.75■■□□□ 1.552e-6■■■□□ 15.2
SFPQP23246 TBC1D22A-204ENST00000394449 2048 ntTSL 524.23■■□□□ 1.472e-6■■■□□ 15.2
SFPQP23246 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC24.02■■□□□ 1.442e-6■■■□□ 15.2
SFPQP23246 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.46■□□□□ 0.552e-6■■■□□ 15.2
SFPQP23246 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.242e-6■■■□□ 15.2
SFPQP23246 TBC1D22A-207ENST00000441162 2636 ntTSL 215.88■□□□□ 0.132e-6■■■□□ 15.2
SFPQP23246 TBC1D22A-203ENST00000380995 3934 ntTSL 1 (best) BASIC14.98□□□□□ -0.012e-6■■■□□ 15.2
SFPQP23246 TTYH3-202ENST00000400376 560 ntTSL 419.74■□□□□ 0.752e-6■■■□□ 15.2
SFPQP23246 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.192e-6■■■□□ 15.2
SFPQP23246 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.28□□□□□ -1.242e-6■■■□□ 15.2
SFPQP23246 CHD6-209ENST00000482596 599 ntTSL 1 (best)7.23□□□□□ -1.252e-6■■■□□ 15.2
SFPQP23246 CHD6-204ENST00000440647 536 ntTSL 36.57□□□□□ -1.362e-6■■■□□ 15.2
SFPQP23246 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.21■■□□□ 1.633e-6■■■□□ 15.1
SFPQP23246 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.45■□□□□ 0.543e-6■■■□□ 15.1
SFPQP23246 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.54■■□□□ 1.682e-6■■■□□ 15.1
SFPQP23246 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC22.1■■□□□ 1.132e-6■■■□□ 15.1
SFPQP23246 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.652e-6■■■□□ 15.1
SFPQP23246 RFX3-210ENST00000457373 822 ntTSL 511.17□□□□□ -0.622e-6■■■□□ 15.1
SFPQP23246 RFX3-201ENST00000302303 1522 ntTSL 1 (best) BASIC10.38□□□□□ -0.752e-6■■■□□ 15.1
SFPQP23246 RFX3-207ENST00000449190 869 ntTSL 310.11□□□□□ -0.792e-6■■■□□ 15.1
SFPQP23246 RFX3-209ENST00000451859 740 ntTSL 39.69□□□□□ -0.862e-6■■■□□ 15.1
SFPQP23246 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.282e-6■■■□□ 15.1
SFPQP23246 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.322e-6■■■□□ 15.1
SFPQP23246 AP001931.1-201ENST00000531074 580 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.41e-8■■■□□ 15.1
SFPQP23246 TMX2-CTNND1-201ENST00000528395 585 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.411e-8■■■□□ 15.1
SFPQP23246 CTNND1-235ENST00000533189 498 ntTSL 312.05□□□□□ -0.481e-8■■■□□ 15.1
SFPQP23246 CTNND1-210ENST00000524630 6553 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.511e-8■■■□□ 15.1
SFPQP23246 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC10.97□□□□□ -0.651e-8■■■□□ 15.1
SFPQP23246 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.761e-8■■■□□ 15.1
SFPQP23246 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.771e-8■■■□□ 15.1
SFPQP23246 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC10.16□□□□□ -0.781e-8■■■□□ 15.1
SFPQP23246 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC9.99□□□□□ -0.811e-8■■■□□ 15.1
SFPQP23246 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC9.93□□□□□ -0.821e-8■■■□□ 15.1
SFPQP23246 CTNND1-215ENST00000526938 3489 ntTSL 5 BASIC9.84□□□□□ -0.831e-8■■■□□ 15.1
SFPQP23246 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC9.83□□□□□ -0.841e-8■■■□□ 15.1
SFPQP23246 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC9.82□□□□□ -0.841e-8■■■□□ 15.1
SFPQP23246 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC9.82□□□□□ -0.841e-8■■■□□ 15.1
SFPQP23246 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC9.74□□□□□ -0.851e-8■■■□□ 15.1
SFPQP23246 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC9.74□□□□□ -0.851e-8■■■□□ 15.1
SFPQP23246 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC9.63□□□□□ -0.871e-8■■■□□ 15.1
SFPQP23246 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC9.5□□□□□ -0.891e-8■■■□□ 15.1
SFPQP23246 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC9.45□□□□□ -0.91e-8■■■□□ 15.1
SFPQP23246 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC9.39□□□□□ -0.911e-8■■■□□ 15.1
SFPQP23246 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC9.38□□□□□ -0.911e-8■■■□□ 15.1
SFPQP23246 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC9.38□□□□□ -0.911e-8■■■□□ 15.1
SFPQP23246 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC9.35□□□□□ -0.911e-8■■■□□ 15.1
SFPQP23246 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC9.16□□□□□ -0.941e-8■■■□□ 15.1
SFPQP23246 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC8.98□□□□□ -0.971e-8■■■□□ 15.1
SFPQP23246 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC8.98□□□□□ -0.971e-8■■■□□ 15.1
SFPQP23246 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC8.89□□□□□ -0.991e-8■■■□□ 15.1
SFPQP23246 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC8.4□□□□□ -1.061e-8■■■□□ 15.1
Retrieved 100 of 4,991 protein–RNA pairs in 141.2 ms