RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 NISCHQ9Y2I1 1504 aa22.58■■□□□ 1.21
RFX3-201ENST00000302303 CCDC180Q9P1Z9 1646 aa19.84■□□□□ 0.77
RFX3-201ENST00000302303 ABCC9O60706 1549 aa19.14■□□□□ 0.65
RFX3-201ENST00000302303 ZCCHC6Q5VYS8 1495 aaKnown RBP18.88■□□□□ 0.61
RFX3-201ENST00000302303 DCAF1Q9Y4B6 1507 aa18.68■□□□□ 0.58
RFX3-201ENST00000302303 DCAF8L2P0C7V8 631 aa18.67■□□□□ 0.58
RFX3-201ENST00000302303 MYO15BQ96JP2 1530 aa18.64■□□□□ 0.57
RFX3-201ENST00000302303 NACADO15069 1562 aa18.59■□□□□ 0.57
RFX3-201ENST00000302303 RB1CC1Q8TDY2 1594 aa18.5■□□□□ 0.55
RFX3-201ENST00000302303 SCRIBQ14160 1630 aa18.16■□□□□ 0.5
RFX3-201ENST00000302303 UNC13AQ9UPW8 1703 aa18.14■□□□□ 0.5
RFX3-201ENST00000302303 BICRAQ9NZM4 1560 aa18.05■□□□□ 0.48
RFX3-201ENST00000302303 SHROOM4Q9ULL8 1493 aa18.04■□□□□ 0.48
RFX3-201ENST00000302303 PABPN1Q86U42 306 aaKnown RBP eCLIP17.98■□□□□ 0.47
RFX3-201ENST00000302303 CECR2Q9BXF3 1484 aa17.61■□□□□ 0.41
RFX3-201ENST00000302303 EIF4G1Q04637 1599 aaKnown RBP17.48■□□□□ 0.39
RFX3-201ENST00000302303 MROH2BQ7Z745 1585 aa17.44■□□□□ 0.38
RFX3-201ENST00000302303 BAZ1AQ9NRL2 1556 aaPredicted RBP17.42■□□□□ 0.38
RFX3-201ENST00000302303 SMARCA4P51532 1647 aa17.42■□□□□ 0.38
RFX3-201ENST00000302303 DNAJC5BQ9UF47 199 aa17.39■□□□□ 0.37
RFX3-201ENST00000302303 RSF1Q96T23 1441 aaPredicted RBP17.38■□□□□ 0.37
RFX3-201ENST00000302303 CC2D2AQ9P2K1 1620 aa17.32■□□□□ 0.36
RFX3-201ENST00000302303 ATAD2BQ9ULI0 1458 aa17.27■□□□□ 0.36
RFX3-201ENST00000302303 PEG3Q9GZU2 1588 aa17.27■□□□□ 0.36
RFX3-201ENST00000302303 WIZO95785 1651 aa17.24■□□□□ 0.35
RFX3-201ENST00000302303 NCAPD3P42695 1498 aa17.21■□□□□ 0.35
RFX3-201ENST00000302303 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.34
RFX3-201ENST00000302303 SMARCA2P51531 1590 aa17.19■□□□□ 0.34
RFX3-201ENST00000302303 SUPT5HO00267 1087 aaKnown RBP17.14■□□□□ 0.33
RFX3-201ENST00000302303 HMGXB3Q12766 1538 aa17.1■□□□□ 0.33
RFX3-201ENST00000302303 BAZ1BQ9UIG0 1483 aaKnown RBP17.08■□□□□ 0.33
RFX3-201ENST00000302303 AEBP2Q6ZN18 517 aaPredicted RBP17.06■□□□□ 0.32
RFX3-201ENST00000302303 TOP2AP11388 1531 aaKnown RBP17.04■□□□□ 0.32
RFX3-201ENST00000302303 CCDC88BA6NC98 1476 aa16.9■□□□□ 0.3
RFX3-201ENST00000302303 CADPSQ9ULU8 1353 aa16.71■□□□□ 0.27
RFX3-201ENST00000302303 NESP48681 1621 aa16.71■□□□□ 0.27
RFX3-201ENST00000302303 CFTRP13569 1480 aa16.7■□□□□ 0.26
RFX3-201ENST00000302303 LAMC3Q9Y6N6 1575 aa16.64■□□□□ 0.25
RFX3-201ENST00000302303 PDS5BQ9NTI5 1447 aa16.5■□□□□ 0.23
RFX3-201ENST00000302303 FANCD2Q9BXW9 1451 aa16.5■□□□□ 0.23
RFX3-201ENST00000302303 PRDM2Q13029 1718 aa16.49■□□□□ 0.23
RFX3-201ENST00000302303 KIF21AQ7Z4S6 1674 aa16.45■□□□□ 0.22
RFX3-201ENST00000302303 CEP164Q9UPV0 1460 aa16.41■□□□□ 0.22
RFX3-201ENST00000302303 ERCC6Q03468 1493 aa16.38■□□□□ 0.21
RFX3-201ENST00000302303 ABCC8Q09428 1581 aa16.37■□□□□ 0.21
RFX3-201ENST00000302303 URB2Q14146 1524 aaKnown RBP16.36■□□□□ 0.21
RFX3-201ENST00000302303 THOC2Q8NI27 1593 aaKnown RBP16.34■□□□□ 0.21
RFX3-201ENST00000302303 CUX1P39880 1505 aa16.33■□□□□ 0.2
RFX3-201ENST00000302303 MRC2Q9UBG0 1479 aa16.33■□□□□ 0.2
RFX3-201ENST00000302303 WRNQ14191 1432 aaPredicted RBP eCLIP16.31■□□□□ 0.2
RFX3-201ENST00000302303 TOPBP1Q92547 1522 aa16.29■□□□□ 0.2
RFX3-201ENST00000302303 WDR62O43379 1518 aa16.28■□□□□ 0.2
RFX3-201ENST00000302303 SYNJ1O43426 1573 aa16.28■□□□□ 0.2
RFX3-201ENST00000302303 DNMBPQ6XZF7 1577 aa16.26■□□□□ 0.19
RFX3-201ENST00000302303 TOP2BQ02880 1626 aa16.24■□□□□ 0.19
RFX3-201ENST00000302303 BIVM-ERCC5R4GMW8 1640 aa16.22■□□□□ 0.19
RFX3-201ENST00000302303 CUX2O14529 1486 aa16.19■□□□□ 0.18
RFX3-201ENST00000302303 POLA1P09884 1462 aaPredicted RBP16.18■□□□□ 0.18
RFX3-201ENST00000302303 FGD5Q6ZNL6 1462 aa16.18■□□□□ 0.18
RFX3-201ENST00000302303 TRIM41Q8WV44 630 aa16.14■□□□□ 0.18
RFX3-201ENST00000302303 RAD54L2Q9Y4B4 1467 aa16.13■□□□□ 0.17
RFX3-201ENST00000302303 SOGA1O94964 1423 aa16.11■□□□□ 0.17
RFX3-201ENST00000302303 TARBP1Q13395 1621 aaKnown RBP16.1■□□□□ 0.17
RFX3-201ENST00000302303 IFT140Q96RY7 1462 aa16.06■□□□□ 0.16
RFX3-201ENST00000302303 ABCA10Q8WWZ4 1543 aa16.04■□□□□ 0.16
RFX3-201ENST00000302303 ZNF608Q9ULD9 1512 aaPredicted RBP16.04■□□□□ 0.16
RFX3-201ENST00000302303 WDR97A6NE52 1622 aa16.03■□□□□ 0.16
RFX3-201ENST00000302303 TDRD9Q8NDG6 1382 aaKnown RBP16■□□□□ 0.15
RFX3-201ENST00000302303 RUSC2Q8N2Y8 1516 aa16■□□□□ 0.15
RFX3-201ENST00000302303 AQRO60306 1485 aaKnown RBP eCLIP15.98■□□□□ 0.15
RFX3-201ENST00000302303 ABCA5Q8WWZ7 1642 aa15.94■□□□□ 0.14
RFX3-201ENST00000302303 EIF4G3O43432 1585 aaKnown RBP15.92■□□□□ 0.14
RFX3-201ENST00000302303 GAPVD1Q14C86 1478 aa15.91■□□□□ 0.14
RFX3-201ENST00000302303 KIF27Q86VH2 1401 aa15.91■□□□□ 0.14
RFX3-201ENST00000302303 IGF1RP08069 1367 aa15.9■□□□□ 0.14
RFX3-201ENST00000302303 GRIN2BQ13224 1484 aa15.86■□□□□ 0.13
RFX3-201ENST00000302303 ERICH3Q5RHP9 1530 aa15.83■□□□□ 0.13
RFX3-201ENST00000302303 FAM9AQ8IZU1 332 aaPredicted RBP15.83■□□□□ 0.12
RFX3-201ENST00000302303 EEA1Q15075 1411 aa15.82■□□□□ 0.12
RFX3-201ENST00000302303 CSRNP3Q8WYN3 585 aa15.82■□□□□ 0.12
RFX3-201ENST00000302303 PBRM1Q86U86 1689 aa15.81■□□□□ 0.12
RFX3-201ENST00000302303 SNAPC4Q5SXM2 1469 aa15.79■□□□□ 0.12
RFX3-201ENST00000302303 PRXQ9BXM0 1461 aa15.78■□□□□ 0.12
RFX3-201ENST00000302303 MAGI1Q96QZ7 1491 aaPredicted RBP15.76■□□□□ 0.11
RFX3-201ENST00000302303 CARMIL1Q5VZK9 1371 aa15.75■□□□□ 0.11
RFX3-201ENST00000302303 ADAMTS12P58397 1594 aa15.74■□□□□ 0.11
RFX3-201ENST00000302303 FHAD1B1AJZ9 1412 aa15.74■□□□□ 0.11
RFX3-201ENST00000302303 CUL7Q14999 1698 aa15.71■□□□□ 0.11
RFX3-201ENST00000302303 SYNJ2O15056 1496 aa15.71■□□□□ 0.11
RFX3-201ENST00000302303 RAPGEF2Q9Y4G8 1499 aa15.68■□□□□ 0.1
RFX3-201ENST00000302303 GRIN2AQ12879 1464 aa15.67■□□□□ 0.1
RFX3-201ENST00000302303 CHMP7Q8WUX9 453 aaPredicted RBP15.66■□□□□ 0.1
RFX3-201ENST00000302303 KIF21BO75037 1637 aa15.66■□□□□ 0.1
RFX3-201ENST00000302303 CHD1O14646 1710 aa15.63■□□□□ 0.09
RFX3-201ENST00000302303 FBLN2P98095 1184 aa15.63■□□□□ 0.09
RFX3-201ENST00000302303 LOC105371045A0A1W2PR82 267 aa15.63■□□□□ 0.09
RFX3-201ENST00000302303 NUP160Q12769 1436 aa15.61■□□□□ 0.09
RFX3-201ENST00000302303 CEP170Q5SW79 1584 aa15.59■□□□□ 0.09
RFX3-201ENST00000302303 EHMT2Q96KQ7 1210 aa15.58■□□□□ 0.09
RFX3-201ENST00000302303 GOLGA3Q08378 1498 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms