RNA–Protein interactions for RNA: ENST00000382004.7

RFX3-204, Transcript of regulatory factor X3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFX3, Length 9,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-204ENST00000382004 DCAF8L2P0C7V8 631 aa9.91□□□□□ -0.82
RFX3-204ENST00000382004 PELP1Q8IZL8 1130 aaKnown RBP9.59□□□□□ -0.87
RFX3-204ENST00000382004 EHMT2Q96KQ7 1210 aa9.4□□□□□ -0.91
RFX3-204ENST00000382004 SUPT5HO00267 1087 aaKnown RBP9.34□□□□□ -0.91
RFX3-204ENST00000382004 ERICH6Q7L0X2 663 aa9.33□□□□□ -0.92
RFX3-204ENST00000382004 CCER1Q8TC90 406 aaPredicted RBP9.17□□□□□ -0.94
RFX3-204ENST00000382004 APLP2Q06481 763 aa9.16□□□□□ -0.94
RFX3-204ENST00000382004 TTBK1Q5TCY1 1321 aaPredicted RBP9.09□□□□□ -0.95
RFX3-204ENST00000382004 MYT1Q01538 1121 aa9.06□□□□□ -0.96
RFX3-204ENST00000382004 SHROOM4Q9ULL8 1493 aa9.03□□□□□ -0.96
RFX3-204ENST00000382004 CENPBP07199 599 aaPredicted RBP9.01□□□□□ -0.97
RFX3-204ENST00000382004 FAM9AQ8IZU1 332 aaPredicted RBP9□□□□□ -0.97
RFX3-204ENST00000382004 PCGF6Q9BYE7 350 aa8.98□□□□□ -0.97
RFX3-204ENST00000382004 NEFLP07196 543 aa8.93□□□□□ -0.98
RFX3-204ENST00000382004 RANGAP1P46060 587 aaPredicted RBP8.91□□□□□ -0.98
RFX3-204ENST00000382004 ATP1B4Q9UN42 357 aaPredicted RBP8.88□□□□□ -0.99
RFX3-204ENST00000382004 YTHDC1Q96MU7 727 aaKnown RBP8.88□□□□□ -0.99
RFX3-204ENST00000382004 DAXXQ9UER7 740 aaPredicted RBP8.84□□□□□ -0.99
RFX3-204ENST00000382004 ZEB1P37275 1124 aaPredicted RBP8.75□□□□□ -1.01
RFX3-204ENST00000382004 POLR3GLQ9BT43 218 aa8.68□□□□□ -1.02
RFX3-204ENST00000382004 CNGB1Q14028 1251 aaPredicted RBP8.63□□□□□ -1.03
RFX3-204ENST00000382004 UBTFP17480 764 aaKnown RBP8.62□□□□□ -1.03
RFX3-204ENST00000382004 MYT1LQ9UL68 1186 aa8.62□□□□□ -1.03
RFX3-204ENST00000382004 ZNF316A6NFI3 1004 aaPredicted RBP8.6□□□□□ -1.03
RFX3-204ENST00000382004 RTL5Q5HYW3 569 aaPredicted RBP8.58□□□□□ -1.04
RFX3-204ENST00000382004 PPARGC1BQ86YN6 1023 aaKnown RBP8.57□□□□□ -1.04
RFX3-204ENST00000382004 CLSPNQ9HAW4 1339 aa8.57□□□□□ -1.04
RFX3-204ENST00000382004 SLC4A1APQ9BWU0 796 aaKnown RBP8.56□□□□□ -1.04
RFX3-204ENST00000382004 TRIM41Q8WV44 630 aa8.56□□□□□ -1.04
RFX3-204ENST00000382004 CHIC1Q5VXU3 224 aa8.56□□□□□ -1.04
RFX3-204ENST00000382004 ITGAEP38570 1179 aa8.5□□□□□ -1.05
RFX3-204ENST00000382004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.47□□□□□ -1.05
RFX3-204ENST00000382004 HNRNPUL2Q1KMD3 747 aaKnown RBP8.47□□□□□ -1.05
RFX3-204ENST00000382004 BCL11AQ9H165 835 aa8.4□□□□□ -1.07
RFX3-204ENST00000382004 ZBTB47Q9UFB7 747 aaPredicted RBP8.36□□□□□ -1.07
RFX3-204ENST00000382004 HRCP23327 699 aa8.36□□□□□ -1.07
RFX3-204ENST00000382004 SLC24A1O60721 1099 aa8.35□□□□□ -1.07
RFX3-204ENST00000382004 TRIM26Q12899 539 aaPredicted RBP8.33□□□□□ -1.08
RFX3-204ENST00000382004 BCANQ96GW7 911 aa8.33□□□□□ -1.08
RFX3-204ENST00000382004 NISCHQ9Y2I1 1504 aa8.29□□□□□ -1.08
RFX3-204ENST00000382004 EIF5BO60841 1220 aaKnown RBP8.27□□□□□ -1.09
RFX3-204ENST00000382004 CDK11AQ9UQ88 783 aaPredicted RBP8.26□□□□□ -1.09
RFX3-204ENST00000382004 CANXP27824 592 aaKnown RBP8.25□□□□□ -1.09
RFX3-204ENST00000382004 DIEXFQ68CQ4 756 aaKnown RBP8.24□□□□□ -1.09
RFX3-204ENST00000382004 TRIM52Q96A61 297 aa8.2□□□□□ -1.1
RFX3-204ENST00000382004 NEUROD1Q13562 356 aa8.19□□□□□ -1.1
RFX3-204ENST00000382004 NPM2Q86SE8 214 aaKnown RBP8.18□□□□□ -1.1
RFX3-204ENST00000382004 FAM50AQ14320 339 aaKnown RBP8.18□□□□□ -1.1
RFX3-204ENST00000382004 ZNF326Q5BKZ1 582 aaKnown RBP8.18□□□□□ -1.1
RFX3-204ENST00000382004 ANP32BQ92688 251 aaKnown RBP8.18□□□□□ -1.1
RFX3-204ENST00000382004 ANP32AP39687 249 aaKnown RBP8.16□□□□□ -1.1
RFX3-204ENST00000382004 GTF3C3Q9Y5Q9 886 aa8.16□□□□□ -1.1
RFX3-204ENST00000382004 ANP32CO43423 234 aa8.14□□□□□ -1.11
RFX3-204ENST00000382004 NEFMP07197 916 aa8.14□□□□□ -1.11
RFX3-204ENST00000382004 HSP90AA1P07900 732 aaKnown RBP8.14□□□□□ -1.11
RFX3-204ENST00000382004 LOC105371045A0A1W2PR82 267 aa8.13□□□□□ -1.11
RFX3-204ENST00000382004 GLIPR1L2Q4G1C9 344 aa8.13□□□□□ -1.11
RFX3-204ENST00000382004 ARXQ96QS3 562 aa8.09□□□□□ -1.11
RFX3-204ENST00000382004 CDK11BP21127 795 aaKnown RBP8.05□□□□□ -1.12
RFX3-204ENST00000382004 UPF2Q9HAU5 1272 aaKnown RBP8.02□□□□□ -1.13
RFX3-204ENST00000382004 NBR1Q14596 966 aa8.01□□□□□ -1.13
RFX3-204ENST00000382004 PLPPR3Q6T4P5 718 aa7.97□□□□□ -1.13
RFX3-204ENST00000382004 FKBP8Q14318 412 aa7.95□□□□□ -1.14
RFX3-204ENST00000382004 SALL2Q9Y467 1007 aaPredicted RBP7.95□□□□□ -1.14
RFX3-204ENST00000382004 TULP1O00294 542 aaPredicted RBP7.93□□□□□ -1.14
RFX3-204ENST00000382004 FBLN2P98095 1184 aa7.93□□□□□ -1.14
RFX3-204ENST00000382004 A0A0G2JS52 829 aa7.93□□□□□ -1.14
RFX3-204ENST00000382004 ARID3CA6NKF2 412 aa7.91□□□□□ -1.14
RFX3-204ENST00000382004 CHGAP10645 457 aaKnown RBP7.9□□□□□ -1.14
RFX3-204ENST00000382004 STAG3Q9UJ98 1225 aa7.9□□□□□ -1.15
RFX3-204ENST00000382004 ESF1Q9H501 851 aaKnown RBP7.89□□□□□ -1.15
RFX3-204ENST00000382004 ACIN1Q9UKV3 1341 aaKnown RBP7.89□□□□□ -1.15
RFX3-204ENST00000382004 TNNT2P45379 298 aaPredicted RBP7.89□□□□□ -1.15
RFX3-204ENST00000382004 SCAF1Q9H7N4 1312 aaKnown RBP7.89□□□□□ -1.15
RFX3-204ENST00000382004 FAM9BQ8IZU0 186 aa7.88□□□□□ -1.15
RFX3-204ENST00000382004 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.88□□□□□ -1.15
RFX3-204ENST00000382004 TRIM44Q96DX7 344 aaPredicted RBP7.88□□□□□ -1.15
RFX3-204ENST00000382004 HNRNPUQ00839 825 aaKnown RBP eCLIP7.87□□□□□ -1.15
RFX3-204ENST00000382004 ZNF777Q9ULD5 760 aaPredicted RBP7.87□□□□□ -1.15
RFX3-204ENST00000382004 CCDC136Q96JN2 1154 aa7.87□□□□□ -1.15
RFX3-204ENST00000382004 TPRNQ4KMQ1 711 aa7.87□□□□□ -1.15
RFX3-204ENST00000382004 NCLP19338 710 aaKnown RBP7.86□□□□□ -1.15
RFX3-204ENST00000382004 PLEKHG5O94827 1062 aa7.84□□□□□ -1.15
RFX3-204ENST00000382004 DNTTIP2Q5QJE6 756 aaKnown RBP7.84□□□□□ -1.15
RFX3-204ENST00000382004 PTMAP06454 111 aaKnown RBP7.84□□□□□ -1.16
RFX3-204ENST00000382004 NCBP3Q53F19 620 aaKnown RBP7.83□□□□□ -1.16
RFX3-204ENST00000382004 MYH16Q9H6N6 1097 aa7.83□□□□□ -1.16
RFX3-204ENST00000382004 P3H3Q8IVL6 736 aa7.83□□□□□ -1.16
RFX3-204ENST00000382004 ZRSR1Q15695 479 aaKnown RBP7.82□□□□□ -1.16
RFX3-204ENST00000382004 ZBTB7CA1YPR0 619 aa7.82□□□□□ -1.16
RFX3-204ENST00000382004 AMER1Q5JTC6 1135 aaPredicted RBP7.81□□□□□ -1.16
RFX3-204ENST00000382004 WDR43Q15061 677 aaKnown RBP eCLIP7.8□□□□□ -1.16
RFX3-204ENST00000382004 TMC1Q8TDI8 760 aa7.8□□□□□ -1.16
RFX3-204ENST00000382004 IRX6P78412 446 aaPredicted RBP7.8□□□□□ -1.16
RFX3-204ENST00000382004 TAOK2Q9UL54 1235 aa7.8□□□□□ -1.16
RFX3-204ENST00000382004 GOLGA6L22H0YM25 854 aa7.78□□□□□ -1.16
RFX3-204ENST00000382004 DDX10Q13206 875 aaKnown RBP7.78□□□□□ -1.16
RFX3-204ENST00000382004 BECN1Q14457 450 aa7.78□□□□□ -1.16
RFX3-204ENST00000382004 NAP1L5Q96NT1 182 aaPredicted RBP7.78□□□□□ -1.16
RFX3-204ENST00000382004 TONSLQ96HA7 1378 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms