RNA–Protein interactions for RNA: ENST00000440647.1

CHD6-204, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 3

Gene CHD6, Length 536 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-204ENST00000440647 AEBP2Q6ZN18 517 aaPredicted RBP27.12■■□□□ 1.93
CHD6-204ENST00000440647 CHIC1Q5VXU3 224 aa25.97■■□□□ 1.75
CHD6-204ENST00000440647 SENP3Q9H4L4 574 aaPredicted RBP23.31■■□□□ 1.32
CHD6-204ENST00000440647 PHF23Q9BUL5 403 aaPredicted RBP22.96■■□□□ 1.27
CHD6-204ENST00000440647 FOXD1Q16676 465 aa21.59■■□□□ 1.05
CHD6-204ENST00000440647 PLPPR3Q6T4P5 718 aa20.89■□□□□ 0.93
CHD6-204ENST00000440647 MSH5O43196 834 aa20.32■□□□□ 0.84
CHD6-204ENST00000440647 PIAS4Q8N2W9 510 aaPredicted RBP20.27■□□□□ 0.84
CHD6-204ENST00000440647 PPP6R1Q9UPN7 881 aa20.22■□□□□ 0.83
CHD6-204ENST00000440647 ADRA2BP18089 450 aa20.2■□□□□ 0.82
CHD6-204ENST00000440647 POTEDQ86YR6 584 aa19.51■□□□□ 0.71
CHD6-204ENST00000440647 SCAF1Q9H7N4 1312 aaKnown RBP18.72■□□□□ 0.59
CHD6-204ENST00000440647 MAPK8IP2Q13387 824 aaPredicted RBP18.5■□□□□ 0.55
CHD6-204ENST00000440647 DMRT2Q9Y5R5 561 aa18.45■□□□□ 0.54
CHD6-204ENST00000440647 PPP4R3CPQ6ZMV5 832 aa18.26■□□□□ 0.51
CHD6-204ENST00000440647 CNKSR2Q8WXI2 1034 aa17.95■□□□□ 0.46
CHD6-204ENST00000440647 HOXD11P31277 338 aaPredicted RBP17.81■□□□□ 0.44
CHD6-204ENST00000440647 RNF216Q9NWF9 866 aaPredicted RBP17.75■□□□□ 0.43
CHD6-204ENST00000440647 DCAF8L1A6NGE4 600 aa17.73■□□□□ 0.43
CHD6-204ENST00000440647 NCBP3Q53F19 620 aaKnown RBP17.73■□□□□ 0.43
CHD6-204ENST00000440647 KCNA4P22459 653 aa17.39■□□□□ 0.37
CHD6-204ENST00000440647 CACNB1Q02641 598 aaPredicted RBP17.34■□□□□ 0.37
CHD6-204ENST00000440647 NPM3O75607 178 aaKnown RBP17.3■□□□□ 0.36
CHD6-204ENST00000440647 DNAJC5BQ9UF47 199 aa17.28■□□□□ 0.36
CHD6-204ENST00000440647 RNF39Q9H2S5 420 aa17.26■□□□□ 0.35
CHD6-204ENST00000440647 C1QBPQ07021 282 aaKnown RBP17.1■□□□□ 0.33
CHD6-204ENST00000440647 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.04■□□□□ 0.322e-13■■□□□ 12.8
CHD6-204ENST00000440647 U3KPZ7 1027 aaPredicted RBP16.57■□□□□ 0.24
CHD6-204ENST00000440647 SLC4A1APQ9BWU0 796 aaKnown RBP16.53■□□□□ 0.24
CHD6-204ENST00000440647 SLC4A2P04920 1241 aa16.45■□□□□ 0.22
CHD6-204ENST00000440647 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.37■□□□□ 0.21
CHD6-204ENST00000440647 APLP2Q06481 763 aa16.37■□□□□ 0.21
CHD6-204ENST00000440647 HNRNPUL2Q1KMD3 747 aaKnown RBP16.37■□□□□ 0.21
CHD6-204ENST00000440647 CAPN15O75808 1086 aa16.36■□□□□ 0.21
CHD6-204ENST00000440647 SPINK5Q9NQ38 1064 aaPredicted RBP16.28■□□□□ 0.2
CHD6-204ENST00000440647 SAMD1Q6SPF0 538 aaPredicted RBP16.22■□□□□ 0.19
CHD6-204ENST00000440647 DSG3P32926 999 aa16.19■□□□□ 0.18
CHD6-204ENST00000440647 ZNF219Q9P2Y4 722 aaPredicted RBP16.15■□□□□ 0.18
CHD6-204ENST00000440647 TRHP20396 242 aaPredicted RBP16.11■□□□□ 0.17
CHD6-204ENST00000440647 MYCNP04198 464 aaPredicted RBP16.08■□□□□ 0.16
CHD6-204ENST00000440647 FOXD4L1Q9NU39 408 aa16.08■□□□□ 0.16
CHD6-204ENST00000440647 ZBTB22O15209 634 aa15.98■□□□□ 0.15
CHD6-204ENST00000440647 ABCB7O75027 752 aa15.91■□□□□ 0.14
CHD6-204ENST00000440647 EHMT2Q96KQ7 1210 aa15.79■□□□□ 0.12
CHD6-204ENST00000440647 CSRNP3Q8WYN3 585 aa15.75■□□□□ 0.11
CHD6-204ENST00000440647 POLA2Q14181 598 aa15.7■□□□□ 0.1
CHD6-204ENST00000440647 RBM42Q9BTD8 480 aaKnown RBP15.58■□□□□ 0.08
CHD6-204ENST00000440647 ATXN8OSP0DMR3 200 aa15.56■□□□□ 0.08
CHD6-204ENST00000440647 ATF5Q9Y2D1 282 aaPredicted RBP15.54■□□□□ 0.08
CHD6-204ENST00000440647 ZBTB12Q9Y330 459 aaPredicted RBP15.51■□□□□ 0.07
CHD6-204ENST00000440647 POTEHQ6S545 545 aa15.36■□□□□ 0.05
CHD6-204ENST00000440647 AKT1S1Q96B36 256 aa15.2■□□□□ 0.02
CHD6-204ENST00000440647 FBLN2P98095 1184 aa15.15■□□□□ 0.02
CHD6-204ENST00000440647 OSCARQ8IYS5 282 aa15.13■□□□□ 0.01
CHD6-204ENST00000440647 CHRDL2Q6WN34 429 aa15.1■□□□□ 0.01
CHD6-204ENST00000440647 REM2Q8IYK8 340 aaPredicted RBP15□□□□□ -0.01
CHD6-204ENST00000440647 SPDYE2BA6NHP3 402 aa14.97□□□□□ -0.01
CHD6-204ENST00000440647 SPDYE6P0CI01 402 aa14.97□□□□□ -0.01
CHD6-204ENST00000440647 SPDYE2Q495Y8 402 aa14.97□□□□□ -0.01
CHD6-204ENST00000440647 MKRN4PQ13434 485 aaPredicted RBP14.85□□□□□ -0.03
CHD6-204ENST00000440647 ZNF692Q9BU19 519 aaPredicted RBP14.81□□□□□ -0.04
CHD6-204ENST00000440647 PITPNM1O00562 1244 aa14.79□□□□□ -0.04
CHD6-204ENST00000440647 PIP4P2Q8N4L2 257 aa14.73□□□□□ -0.05
CHD6-204ENST00000440647 SPDYE1Q8NFV5 336 aaPredicted RBP14.71□□□□□ -0.05
CHD6-204ENST00000440647 SSUH2Q9Y2M2 353 aa14.71□□□□□ -0.05
CHD6-204ENST00000440647 FXR2P51116 673 aaKnown RBP eCLIP14.68□□□□□ -0.061e-6■■□□□ 14.1
CHD6-204ENST00000440647 CLEC11AQ9Y240 323 aa14.64□□□□□ -0.07
CHD6-204ENST00000440647 NISCHQ9Y2I1 1504 aa14.59□□□□□ -0.07
CHD6-204ENST00000440647 PABPN1Q86U42 306 aaKnown RBP eCLIP14.55□□□□□ -0.08
CHD6-204ENST00000440647 HAX1O00165 279 aa14.51□□□□□ -0.09
CHD6-204ENST00000440647 PRKAR2AP13861 404 aaKnown RBP14.47□□□□□ -0.09
CHD6-204ENST00000440647 PRR29P0C7W0 189 aa14.46□□□□□ -0.09
CHD6-204ENST00000440647 SP7Q8TDD2 431 aaPredicted RBP14.46□□□□□ -0.09
CHD6-204ENST00000440647 SPDYE4A6NLX3 237 aa14.43□□□□□ -0.1
CHD6-204ENST00000440647 STAG3Q9UJ98 1225 aa14.31□□□□□ -0.12
CHD6-204ENST00000440647 CHADLQ6NUI6 762 aa14.25□□□□□ -0.13
CHD6-204ENST00000440647 FKBP8Q14318 412 aa14.24□□□□□ -0.13
CHD6-204ENST00000440647 C19orf67A6NJJ6 358 aa14.2□□□□□ -0.14
CHD6-204ENST00000440647 EVX2Q03828 476 aa14.17□□□□□ -0.14
CHD6-204ENST00000440647 PROM2Q8N271 834 aa14.17□□□□□ -0.14
CHD6-204ENST00000440647 FARP1Q9Y4F1 1045 aaPredicted RBP14.13□□□□□ -0.15
CHD6-204ENST00000440647 CD44P16070 742 aaKnown RBP14.01□□□□□ -0.17
CHD6-204ENST00000440647 CREBZFQ9NS37 354 aa14□□□□□ -0.17
CHD6-204ENST00000440647 CLCN6P51797 869 aa13.99□□□□□ -0.17
CHD6-204ENST00000440647 GABBR2O75899 941 aa13.97□□□□□ -0.17
CHD6-204ENST00000440647 NPM1P06748 294 aaKnown RBP eCLIP13.92□□□□□ -0.18
CHD6-204ENST00000440647 PAK3O75914 559 aaPredicted RBP13.87□□□□□ -0.19
CHD6-204ENST00000440647 ZRANB1Q9UGI0 708 aa13.84□□□□□ -0.19
CHD6-204ENST00000440647 FBXO3Q9UK99 471 aa13.82□□□□□ -0.2
CHD6-204ENST00000440647 PLEKHG5O94827 1062 aa13.81□□□□□ -0.2
CHD6-204ENST00000440647 ZNF579Q8NAF0 562 aaKnown RBP13.79□□□□□ -0.2
CHD6-204ENST00000440647 MNX1P50219 401 aaPredicted RBP13.74□□□□□ -0.21
CHD6-204ENST00000440647 MIER1Q8N108 512 aa13.72□□□□□ -0.21
CHD6-204ENST00000440647 DCBLD2Q96PD2 775 aa13.71□□□□□ -0.21
CHD6-204ENST00000440647 PLCD3Q8N3E9 789 aa13.66□□□□□ -0.22
CHD6-204ENST00000440647 VASPP50552 380 aaPredicted RBP13.61□□□□□ -0.23
CHD6-204ENST00000440647 ZBTB47Q9UFB7 747 aaPredicted RBP13.59□□□□□ -0.23
CHD6-204ENST00000440647 POTEIP0CG38 1075 aa13.58□□□□□ -0.24
CHD6-204ENST00000440647 LHX8Q68G74 356 aa13.58□□□□□ -0.24
CHD6-204ENST00000440647 PHF12Q96QT6 1004 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 282.4 ms