RNA–Protein interactions for RNA: ENST00000617270.4

RFX3-212, Transcript of regulatory factor X3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFX3, Length 9,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-212ENST00000617270 DCAF8L2P0C7V8 631 aa10.14□□□□□ -0.79
RFX3-212ENST00000617270 PELP1Q8IZL8 1130 aaKnown RBP9.83□□□□□ -0.84
RFX3-212ENST00000617270 EHMT2Q96KQ7 1210 aa9.63□□□□□ -0.87
RFX3-212ENST00000617270 SUPT5HO00267 1087 aaKnown RBP9.61□□□□□ -0.87
RFX3-212ENST00000617270 ERICH6Q7L0X2 663 aa9.52□□□□□ -0.89
RFX3-212ENST00000617270 APLP2Q06481 763 aa9.39□□□□□ -0.91
RFX3-212ENST00000617270 CCER1Q8TC90 406 aaPredicted RBP9.37□□□□□ -0.91
RFX3-212ENST00000617270 TTBK1Q5TCY1 1321 aaPredicted RBP9.35□□□□□ -0.91
RFX3-212ENST00000617270 SHROOM4Q9ULL8 1493 aa9.29□□□□□ -0.92
RFX3-212ENST00000617270 MYT1Q01538 1121 aa9.26□□□□□ -0.93
RFX3-212ENST00000617270 CENPBP07199 599 aaPredicted RBP9.25□□□□□ -0.93
RFX3-212ENST00000617270 PCGF6Q9BYE7 350 aa9.2□□□□□ -0.94
RFX3-212ENST00000617270 FAM9AQ8IZU1 332 aaPredicted RBP9.18□□□□□ -0.94
RFX3-212ENST00000617270 NEFLP07196 543 aa9.15□□□□□ -0.94
RFX3-212ENST00000617270 RANGAP1P46060 587 aaPredicted RBP9.15□□□□□ -0.95
RFX3-212ENST00000617270 YTHDC1Q96MU7 727 aaKnown RBP9.14□□□□□ -0.95
RFX3-212ENST00000617270 ATP1B4Q9UN42 357 aaPredicted RBP9.05□□□□□ -0.96
RFX3-212ENST00000617270 DAXXQ9UER7 740 aaPredicted RBP9.04□□□□□ -0.96
RFX3-212ENST00000617270 ZEB1P37275 1124 aaPredicted RBP8.96□□□□□ -0.97
RFX3-212ENST00000617270 POLR3GLQ9BT43 218 aa8.87□□□□□ -0.99
RFX3-212ENST00000617270 UBTFP17480 764 aaKnown RBP8.83□□□□□ -1
RFX3-212ENST00000617270 CNGB1Q14028 1251 aaPredicted RBP8.83□□□□□ -1
RFX3-212ENST00000617270 ZNF316A6NFI3 1004 aaPredicted RBP8.82□□□□□ -1
RFX3-212ENST00000617270 RTL5Q5HYW3 569 aaPredicted RBP8.81□□□□□ -1
RFX3-212ENST00000617270 TRIM41Q8WV44 630 aa8.8□□□□□ -1
RFX3-212ENST00000617270 PPARGC1BQ86YN6 1023 aaKnown RBP8.79□□□□□ -1
RFX3-212ENST00000617270 MYT1LQ9UL68 1186 aa8.78□□□□□ -1
RFX3-212ENST00000617270 CLSPNQ9HAW4 1339 aa8.77□□□□□ -1.01
RFX3-212ENST00000617270 CHIC1Q5VXU3 224 aa8.75□□□□□ -1.01
RFX3-212ENST00000617270 SLC4A1APQ9BWU0 796 aaKnown RBP8.73□□□□□ -1.01
RFX3-212ENST00000617270 ITGAEP38570 1179 aa8.71□□□□□ -1.01
RFX3-212ENST00000617270 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.67□□□□□ -1.02
RFX3-212ENST00000617270 HNRNPUL2Q1KMD3 747 aaKnown RBP8.67□□□□□ -1.02
RFX3-212ENST00000617270 HRCP23327 699 aa8.61□□□□□ -1.03
RFX3-212ENST00000617270 BCL11AQ9H165 835 aa8.59□□□□□ -1.03
RFX3-212ENST00000617270 BCANQ96GW7 911 aa8.57□□□□□ -1.04
RFX3-212ENST00000617270 NISCHQ9Y2I1 1504 aa8.55□□□□□ -1.04
RFX3-212ENST00000617270 TRIM26Q12899 539 aaPredicted RBP8.54□□□□□ -1.04
RFX3-212ENST00000617270 ZBTB47Q9UFB7 747 aaPredicted RBP8.53□□□□□ -1.04
RFX3-212ENST00000617270 SLC24A1O60721 1099 aa8.5□□□□□ -1.05
RFX3-212ENST00000617270 EIF5BO60841 1220 aaKnown RBP8.48□□□□□ -1.05
RFX3-212ENST00000617270 CANXP27824 592 aaKnown RBP8.46□□□□□ -1.05
RFX3-212ENST00000617270 DIEXFQ68CQ4 756 aaKnown RBP8.45□□□□□ -1.06
RFX3-212ENST00000617270 CDK11AQ9UQ88 783 aaPredicted RBP8.44□□□□□ -1.06
RFX3-212ENST00000617270 ZNF326Q5BKZ1 582 aaKnown RBP8.43□□□□□ -1.06
RFX3-212ENST00000617270 TRIM52Q96A61 297 aa8.39□□□□□ -1.07
RFX3-212ENST00000617270 NPM2Q86SE8 214 aaKnown RBP8.39□□□□□ -1.07
RFX3-212ENST00000617270 GTF3C3Q9Y5Q9 886 aa8.39□□□□□ -1.07
RFX3-212ENST00000617270 NEUROD1Q13562 356 aa8.38□□□□□ -1.07
RFX3-212ENST00000617270 FAM50AQ14320 339 aaKnown RBP8.38□□□□□ -1.07
RFX3-212ENST00000617270 ANP32BQ92688 251 aaKnown RBP8.37□□□□□ -1.07
RFX3-212ENST00000617270 ANP32AP39687 249 aaKnown RBP8.36□□□□□ -1.07
RFX3-212ENST00000617270 ANP32CO43423 234 aa8.34□□□□□ -1.07
RFX3-212ENST00000617270 LOC105371045A0A1W2PR82 267 aa8.34□□□□□ -1.07
RFX3-212ENST00000617270 HSP90AA1P07900 732 aaKnown RBP8.33□□□□□ -1.08
RFX3-212ENST00000617270 GLIPR1L2Q4G1C9 344 aa8.32□□□□□ -1.08
RFX3-212ENST00000617270 NEFMP07197 916 aa8.32□□□□□ -1.08
RFX3-212ENST00000617270 ARXQ96QS3 562 aa8.3□□□□□ -1.08
RFX3-212ENST00000617270 CDK11BP21127 795 aaKnown RBP8.22□□□□□ -1.09
RFX3-212ENST00000617270 UPF2Q9HAU5 1272 aaKnown RBP8.21□□□□□ -1.09
RFX3-212ENST00000617270 NBR1Q14596 966 aa8.21□□□□□ -1.1
RFX3-212ENST00000617270 ARID3CA6NKF2 412 aa8.15□□□□□ -1.11
RFX3-212ENST00000617270 FKBP8Q14318 412 aa8.15□□□□□ -1.11
RFX3-212ENST00000617270 ACIN1Q9UKV3 1341 aaKnown RBP8.13□□□□□ -1.11
RFX3-212ENST00000617270 FBLN2P98095 1184 aa8.13□□□□□ -1.11
RFX3-212ENST00000617270 PLPPR3Q6T4P5 718 aa8.13□□□□□ -1.11
RFX3-212ENST00000617270 SALL2Q9Y467 1007 aaPredicted RBP8.11□□□□□ -1.11
RFX3-212ENST00000617270 A0A0G2JS52 829 aa8.1□□□□□ -1.11
RFX3-212ENST00000617270 HNRNPUQ00839 825 aaKnown RBP eCLIP8.08□□□□□ -1.12
RFX3-212ENST00000617270 ZNF777Q9ULD5 760 aaPredicted RBP8.08□□□□□ -1.12
RFX3-212ENST00000617270 FAM9BQ8IZU0 186 aa8.08□□□□□ -1.12
RFX3-212ENST00000617270 TULP1O00294 542 aaPredicted RBP8.08□□□□□ -1.12
RFX3-212ENST00000617270 ESF1Q9H501 851 aaKnown RBP8.07□□□□□ -1.12
RFX3-212ENST00000617270 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.07□□□□□ -1.12
RFX3-212ENST00000617270 CCDC136Q96JN2 1154 aa8.07□□□□□ -1.12
RFX3-212ENST00000617270 CHGAP10645 457 aaKnown RBP8.07□□□□□ -1.12
RFX3-212ENST00000617270 STAG3Q9UJ98 1225 aa8.06□□□□□ -1.12
RFX3-212ENST00000617270 SCAF1Q9H7N4 1312 aaKnown RBP8.06□□□□□ -1.12
RFX3-212ENST00000617270 TNNT2P45379 298 aaPredicted RBP8.06□□□□□ -1.12
RFX3-212ENST00000617270 TPRNQ4KMQ1 711 aa8.05□□□□□ -1.12
RFX3-212ENST00000617270 TRIM44Q96DX7 344 aaPredicted RBP8.04□□□□□ -1.12
RFX3-212ENST00000617270 MYH16Q9H6N6 1097 aa8.03□□□□□ -1.12
RFX3-212ENST00000617270 PTMAP06454 111 aaKnown RBP8.02□□□□□ -1.12
RFX3-212ENST00000617270 NCLP19338 710 aaKnown RBP8.02□□□□□ -1.12
RFX3-212ENST00000617270 P3H3Q8IVL6 736 aa8.02□□□□□ -1.13
RFX3-212ENST00000617270 PLEKHG5O94827 1062 aa8.01□□□□□ -1.13
RFX3-212ENST00000617270 IRX6P78412 446 aaPredicted RBP8.01□□□□□ -1.13
RFX3-212ENST00000617270 ZRSR1Q15695 479 aaKnown RBP8.01□□□□□ -1.13
RFX3-212ENST00000617270 DNTTIP2Q5QJE6 756 aaKnown RBP8□□□□□ -1.13
RFX3-212ENST00000617270 AMER1Q5JTC6 1135 aaPredicted RBP8□□□□□ -1.13
RFX3-212ENST00000617270 ZBTB7CA1YPR0 619 aa7.99□□□□□ -1.13
RFX3-212ENST00000617270 TONSLQ96HA7 1378 aa7.99□□□□□ -1.13
RFX3-212ENST00000617270 WDR43Q15061 677 aaKnown RBP eCLIP7.99□□□□□ -1.13
RFX3-212ENST00000617270 NCBP3Q53F19 620 aaKnown RBP7.98□□□□□ -1.13
RFX3-212ENST00000617270 GOLGA6L22H0YM25 854 aa7.98□□□□□ -1.13
RFX3-212ENST00000617270 TAOK2Q9UL54 1235 aa7.97□□□□□ -1.13
RFX3-212ENST00000617270 DDX10Q13206 875 aaKnown RBP7.97□□□□□ -1.13
RFX3-212ENST00000617270 TMC1Q8TDI8 760 aa7.97□□□□□ -1.13
RFX3-212ENST00000617270 NAP1L5Q96NT1 182 aaPredicted RBP7.97□□□□□ -1.13
RFX3-212ENST00000617270 BECN1Q14457 450 aa7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms