RNA–Protein interactions for RNA: ENST00000397661.6

NFIX-203, Transcript of nuclear factor I X, humanhuman

TSL 5 BASIC

Gene NFIX, Length 3,143 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFIX-203ENST00000397661 NISCHQ9Y2I1 1504 aa43.98■■■■■ 4.63
NFIX-203ENST00000397661 SHROOM4Q9ULL8 1493 aa38.83■■■■□ 3.81
NFIX-203ENST00000397661 SUPT5HO00267 1087 aaKnown RBP38.2■■■■□ 3.71
NFIX-203ENST00000397661 DCAF8L2P0C7V8 631 aa37.94■■■■□ 3.66
NFIX-203ENST00000397661 ZCCHC6Q5VYS8 1495 aaKnown RBP37.11■■■■□ 3.53
NFIX-203ENST00000397661 CCDC180Q9P1Z9 1646 aa36.74■■■■□ 3.47
NFIX-203ENST00000397661 CHIC1Q5VXU3 224 aa36.67■■■■□ 3.46
NFIX-203ENST00000397661 MYO15BQ96JP2 1530 aa36.48■■■■□ 3.43
NFIX-203ENST00000397661 PCGF6Q9BYE7 350 aa36.16■■■■□ 3.38
NFIX-203ENST00000397661 LOC105371045A0A1W2PR82 267 aa36.07■■■■□ 3.36
NFIX-203ENST00000397661 HRCP23327 699 aa35.88■■■■□ 3.33
NFIX-203ENST00000397661 PPARGC1BQ86YN6 1023 aaKnown RBP35.75■■■■□ 3.31
NFIX-203ENST00000397661 EHMT2Q96KQ7 1210 aa35.63■■■■□ 3.3
NFIX-203ENST00000397661 DCAF1Q9Y4B6 1507 aa35.52■■■■□ 3.28
NFIX-203ENST00000397661 FAM9AQ8IZU1 332 aaPredicted RBP35.49■■■■□ 3.27
NFIX-203ENST00000397661 SCRIBQ14160 1630 aa35.36■■■■□ 3.25
NFIX-203ENST00000397661 TRIM41Q8WV44 630 aa35.22■■■■□ 3.23
NFIX-203ENST00000397661 RSF1Q96T23 1441 aaPredicted RBP35.1■■■■□ 3.21
NFIX-203ENST00000397661 ABCC9O60706 1549 aa35.1■■■■□ 3.21
NFIX-203ENST00000397661 TRIM26Q12899 539 aaPredicted RBP34.92■■■■□ 3.18
NFIX-203ENST00000397661 RB1CC1Q8TDY2 1594 aa34.77■■■■□ 3.16
NFIX-203ENST00000397661 CECR2Q9BXF3 1484 aa34.73■■■■□ 3.15
NFIX-203ENST00000397661 MROH2BQ7Z745 1585 aa34.45■■■■□ 3.1
NFIX-203ENST00000397661 TTBK1Q5TCY1 1321 aaPredicted RBP34.42■■■■□ 3.1
NFIX-203ENST00000397661 WIZO95785 1651 aa34.25■■■■□ 3.07
NFIX-203ENST00000397661 NACADO15069 1562 aa34.21■■■■□ 3.07
NFIX-203ENST00000397661 PABPN1Q86U42 306 aaKnown RBP eCLIP34.02■■■■□ 3.04
NFIX-203ENST00000397661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34■■■■□ 3.03
NFIX-203ENST00000397661 ZEB1P37275 1124 aaPredicted RBP33.98■■■■□ 3.03
NFIX-203ENST00000397661 CCER1Q8TC90 406 aaPredicted RBP33.81■■■■□ 3
NFIX-203ENST00000397661 ABCC8Q09428 1581 aa33.78■■■■□ 3
NFIX-203ENST00000397661 SCAF1Q9H7N4 1312 aaKnown RBP33.77■■■■□ 3
NFIX-203ENST00000397661 UBTFP17480 764 aaKnown RBP33.71■■■□□ 2.99
NFIX-203ENST00000397661 BAZ1AQ9NRL2 1556 aaPredicted RBP33.69■■■□□ 2.98
NFIX-203ENST00000397661 CCDC88BA6NC98 1476 aa33.67■■■□□ 2.98
NFIX-203ENST00000397661 RANGAP1P46060 587 aaPredicted RBP33.59■■■□□ 2.97
NFIX-203ENST00000397661 SOGA1O94964 1423 aa33.58■■■□□ 2.97
NFIX-203ENST00000397661 PELP1Q8IZL8 1130 aaKnown RBP33.46■■■□□ 2.95
NFIX-203ENST00000397661 RUSC2Q8N2Y8 1516 aa33.43■■■□□ 2.94
NFIX-203ENST00000397661 CSRNP3Q8WYN3 585 aa33.42■■■□□ 2.94
NFIX-203ENST00000397661 SMARCA4P51532 1647 aa33.4■■■□□ 2.94
NFIX-203ENST00000397661 TOP2AP11388 1531 aaKnown RBP33.4■■■□□ 2.94
NFIX-203ENST00000397661 CEP162Q5TB80 1403 aa33.34■■■□□ 2.93
NFIX-203ENST00000397661 SMARCA2P51531 1590 aa33.33■■■□□ 2.93
NFIX-203ENST00000397661 EIF4G1Q04637 1599 aaKnown RBP33.31■■■□□ 2.92
NFIX-203ENST00000397661 HNRNPUL2Q1KMD3 747 aaKnown RBP33.2■■■□□ 2.91
NFIX-203ENST00000397661 UNC13AQ9UPW8 1703 aa33.18■■■□□ 2.9
NFIX-203ENST00000397661 NEUROD1Q13562 356 aa33.12■■■□□ 2.89
NFIX-203ENST00000397661 TNIKQ9UKE5 1360 aa33.08■■■□□ 2.89
NFIX-203ENST00000397661 DIEXFQ68CQ4 756 aaKnown RBP33.08■■■□□ 2.89
NFIX-203ENST00000397661 WRNQ14191 1432 aaPredicted RBP eCLIP33.03■■■□□ 2.88
NFIX-203ENST00000397661 ACIN1Q9UKV3 1341 aaKnown RBP33.03■■■□□ 2.88
NFIX-203ENST00000397661 YTHDC1Q96MU7 727 aaKnown RBP32.97■■■□□ 2.87
NFIX-203ENST00000397661 GTF3C3Q9Y5Q9 886 aa32.91■■■□□ 2.86
NFIX-203ENST00000397661 BICRAQ9NZM4 1560 aa32.88■■■□□ 2.85
NFIX-203ENST00000397661 APLP2Q06481 763 aa32.88■■■□□ 2.85
NFIX-203ENST00000397661 GOLGA3Q08378 1498 aa32.86■■■□□ 2.85
NFIX-203ENST00000397661 EEA1Q15075 1411 aa32.79■■■□□ 2.84
NFIX-203ENST00000397661 SYNJ1O43426 1573 aa32.73■■■□□ 2.83
NFIX-203ENST00000397661 CLIP1P30622 1438 aa32.73■■■□□ 2.83
NFIX-203ENST00000397661 BAZ1BQ9UIG0 1483 aaKnown RBP32.71■■■□□ 2.83
NFIX-203ENST00000397661 ATAD2BQ9ULI0 1458 aa32.69■■■□□ 2.82
NFIX-203ENST00000397661 CENPBP07199 599 aaPredicted RBP32.68■■■□□ 2.82
NFIX-203ENST00000397661 ZNF316A6NFI3 1004 aaPredicted RBP32.63■■■□□ 2.81
NFIX-203ENST00000397661 RAPGEF2Q9Y4G8 1499 aa32.63■■■□□ 2.81
NFIX-203ENST00000397661 CEP164Q9UPV0 1460 aa32.61■■■□□ 2.81
NFIX-203ENST00000397661 ITGAEP38570 1179 aa32.47■■■□□ 2.79
NFIX-203ENST00000397661 MIER1Q8N108 512 aa32.43■■■□□ 2.78
NFIX-203ENST00000397661 VPS8Q8N3P4 1428 aa32.41■■■□□ 2.78
NFIX-203ENST00000397661 KANK4Q5T7N3 995 aaPredicted RBP32.37■■■□□ 2.77
NFIX-203ENST00000397661 PEG3Q9GZU2 1588 aa32.36■■■□□ 2.77
NFIX-203ENST00000397661 KIF21BO75037 1637 aa32.27■■■□□ 2.76
NFIX-203ENST00000397661 ATP1B4Q9UN42 357 aaPredicted RBP32.15■■■□□ 2.74
NFIX-203ENST00000397661 P3H3Q8IVL6 736 aa32.09■■■□□ 2.73
NFIX-203ENST00000397661 TOP2BQ02880 1626 aa32.07■■■□□ 2.72
NFIX-203ENST00000397661 ARAP1Q96P48 1450 aa31.98■■■□□ 2.71
NFIX-203ENST00000397661 CUX1P39880 1505 aa31.97■■■□□ 2.71
NFIX-203ENST00000397661 KIF27Q86VH2 1401 aa31.96■■■□□ 2.71
NFIX-203ENST00000397661 PRXQ9BXM0 1461 aa31.94■■■□□ 2.7
NFIX-203ENST00000397661 DHX57Q6P158 1386 aaKnown RBP31.9■■■□□ 2.7
NFIX-203ENST00000397661 MYT1Q01538 1121 aa31.84■■■□□ 2.69
NFIX-203ENST00000397661 NCAPD3P42695 1498 aa31.84■■■□□ 2.69
NFIX-203ENST00000397661 FAM50AQ14320 339 aaKnown RBP31.82■■■□□ 2.69
NFIX-203ENST00000397661 CUX2O14529 1486 aa31.8■■■□□ 2.68
NFIX-203ENST00000397661 BIVM-ERCC5R4GMW8 1640 aa31.77■■■□□ 2.68
NFIX-203ENST00000397661 ARHGAP35Q9NRY4 1499 aa31.72■■■□□ 2.67
NFIX-203ENST00000397661 CCNB3Q8WWL7 1395 aa31.72■■■□□ 2.67
NFIX-203ENST00000397661 ERICH3Q5RHP9 1530 aa31.71■■■□□ 2.67
NFIX-203ENST00000397661 CFTRP13569 1480 aa31.71■■■□□ 2.67
NFIX-203ENST00000397661 IGF1RP08069 1367 aa31.68■■■□□ 2.66
NFIX-203ENST00000397661 CARMIL1Q5VZK9 1371 aa31.63■■■□□ 2.65
NFIX-203ENST00000397661 SIN3AQ96ST3 1273 aa31.62■■■□□ 2.65
NFIX-203ENST00000397661 HIRIP3Q9BW71 556 aaPredicted RBP31.62■■■□□ 2.65
NFIX-203ENST00000397661 HMGXB3Q12766 1538 aa31.61■■■□□ 2.65
NFIX-203ENST00000397661 KCNH8Q96L42 1107 aa31.58■■■□□ 2.65
NFIX-203ENST00000397661 RAB3GAP2Q9H2M9 1393 aa31.55■■■□□ 2.64
NFIX-203ENST00000397661 CADPSQ9ULU8 1353 aa31.53■■■□□ 2.64
NFIX-203ENST00000397661 RRBP1Q9P2E9 1410 aaKnown RBP31.53■■■□□ 2.64
NFIX-203ENST00000397661 CLSPNQ9HAW4 1339 aa31.51■■■□□ 2.63
NFIX-203ENST00000397661 FGD5Q6ZNL6 1462 aa31.49■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms