RNA–Protein interactions for RNA: ENST00000449190.5

RFX3-207, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-207ENST00000449190 AEBP2Q6ZN18 517 aaPredicted RBP23.53■■□□□ 1.36
RFX3-207ENST00000449190 NISCHQ9Y2I1 1504 aa21.96■■□□□ 1.11
RFX3-207ENST00000449190 CHIC1Q5VXU3 224 aa21.94■■□□□ 1.1
RFX3-207ENST00000449190 SENP3Q9H4L4 574 aaPredicted RBP20.13■□□□□ 0.81
RFX3-207ENST00000449190 PHF23Q9BUL5 403 aaPredicted RBP19.8■□□□□ 0.76
RFX3-207ENST00000449190 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
RFX3-207ENST00000449190 ABCC9O60706 1549 aa19.25■□□□□ 0.67
RFX3-207ENST00000449190 FOXD1Q16676 465 aa18.85■□□□□ 0.61
RFX3-207ENST00000449190 DCAF8L2P0C7V8 631 aa18.51■□□□□ 0.55
RFX3-207ENST00000449190 RB1CC1Q8TDY2 1594 aa18.45■□□□□ 0.54
RFX3-207ENST00000449190 POTEDQ86YR6 584 aa18.43■□□□□ 0.54
RFX3-207ENST00000449190 NACADO15069 1562 aa18.42■□□□□ 0.54
RFX3-207ENST00000449190 MYO15BQ96JP2 1530 aa18.31■□□□□ 0.52
RFX3-207ENST00000449190 ZCCHC6Q5VYS8 1495 aaKnown RBP18.24■□□□□ 0.51
RFX3-207ENST00000449190 DCAF1Q9Y4B6 1507 aa18.18■□□□□ 0.5
RFX3-207ENST00000449190 PABPN1Q86U42 306 aaKnown RBP eCLIP18.04■□□□□ 0.48
RFX3-207ENST00000449190 UNC13AQ9UPW8 1703 aa17.89■□□□□ 0.46
RFX3-207ENST00000449190 BICRAQ9NZM4 1560 aa17.87■□□□□ 0.45
RFX3-207ENST00000449190 DNAJC5BQ9UF47 199 aa17.86■□□□□ 0.45
RFX3-207ENST00000449190 MSH5O43196 834 aa17.85■□□□□ 0.45
RFX3-207ENST00000449190 SCRIBQ14160 1630 aa17.76■□□□□ 0.43
RFX3-207ENST00000449190 SHROOM4Q9ULL8 1493 aa17.71■□□□□ 0.43
RFX3-207ENST00000449190 PIAS4Q8N2W9 510 aaPredicted RBP17.45■□□□□ 0.38
RFX3-207ENST00000449190 EIF4G1Q04637 1599 aaKnown RBP17.41■□□□□ 0.38
RFX3-207ENST00000449190 CC2D2AQ9P2K1 1620 aa17.36■□□□□ 0.37
RFX3-207ENST00000449190 CECR2Q9BXF3 1484 aa17.32■□□□□ 0.36
RFX3-207ENST00000449190 PPP6R1Q9UPN7 881 aa17.19■□□□□ 0.34
RFX3-207ENST00000449190 PLPPR3Q6T4P5 718 aa17.11■□□□□ 0.33
RFX3-207ENST00000449190 ADRA2BP18089 450 aa17.08■□□□□ 0.32
RFX3-207ENST00000449190 NCAPD3P42695 1498 aa17.05■□□□□ 0.32
RFX3-207ENST00000449190 ATAD2BQ9ULI0 1458 aa17.02■□□□□ 0.32
RFX3-207ENST00000449190 BAZ1AQ9NRL2 1556 aaPredicted RBP17.02■□□□□ 0.31
RFX3-207ENST00000449190 SMARCA4P51532 1647 aa17■□□□□ 0.31
RFX3-207ENST00000449190 SMARCA2P51531 1590 aa16.96■□□□□ 0.31
RFX3-207ENST00000449190 MROH2BQ7Z745 1585 aa16.91■□□□□ 0.3
RFX3-207ENST00000449190 HMGXB3Q12766 1538 aa16.87■□□□□ 0.29
RFX3-207ENST00000449190 PEG3Q9GZU2 1588 aa16.87■□□□□ 0.29
RFX3-207ENST00000449190 BAZ1BQ9UIG0 1483 aaKnown RBP16.85■□□□□ 0.29
RFX3-207ENST00000449190 RSF1Q96T23 1441 aaPredicted RBP16.72■□□□□ 0.27
RFX3-207ENST00000449190 WIZO95785 1651 aa16.68■□□□□ 0.26
RFX3-207ENST00000449190 NESP48681 1621 aa16.61■□□□□ 0.25
RFX3-207ENST00000449190 ERCC6Q03468 1493 aa16.6■□□□□ 0.25
RFX3-207ENST00000449190 CADPSQ9ULU8 1353 aa16.57■□□□□ 0.24
RFX3-207ENST00000449190 LAMC3Q9Y6N6 1575 aa16.55■□□□□ 0.24
RFX3-207ENST00000449190 PDS5BQ9NTI5 1447 aa16.52■□□□□ 0.23
RFX3-207ENST00000449190 TOP2AP11388 1531 aaKnown RBP16.51■□□□□ 0.23
RFX3-207ENST00000449190 CUX2O14529 1486 aa16.48■□□□□ 0.23
RFX3-207ENST00000449190 CFTRP13569 1480 aa16.41■□□□□ 0.22
RFX3-207ENST00000449190 SUPT5HO00267 1087 aaKnown RBP16.39■□□□□ 0.21
RFX3-207ENST00000449190 CCDC88BA6NC98 1476 aa16.38■□□□□ 0.21
RFX3-207ENST00000449190 FANCD2Q9BXW9 1451 aa16.32■□□□□ 0.2
RFX3-207ENST00000449190 KIF21AQ7Z4S6 1674 aa16.31■□□□□ 0.2
RFX3-207ENST00000449190 THOC2Q8NI27 1593 aaKnown RBP16.31■□□□□ 0.2
RFX3-207ENST00000449190 MRC2Q9UBG0 1479 aa16.29■□□□□ 0.2
RFX3-207ENST00000449190 CEP164Q9UPV0 1460 aa16.29■□□□□ 0.2
RFX3-207ENST00000449190 WDR62O43379 1518 aa16.21■□□□□ 0.19
RFX3-207ENST00000449190 DNAJC5Q9H3Z4 198 aa16.21■□□□□ 0.19
RFX3-207ENST00000449190 URB2Q14146 1524 aaKnown RBP16.14■□□□□ 0.18
RFX3-207ENST00000449190 PRDM2Q13029 1718 aa16.1■□□□□ 0.17
RFX3-207ENST00000449190 ABCC8Q09428 1581 aa16.09■□□□□ 0.17
RFX3-207ENST00000449190 TOPBP1Q92547 1522 aa16.04■□□□□ 0.16
RFX3-207ENST00000449190 IFT140Q96RY7 1462 aa15.99■□□□□ 0.15
RFX3-207ENST00000449190 DNMBPQ6XZF7 1577 aa15.98■□□□□ 0.15
RFX3-207ENST00000449190 OSCARQ8IYS5 282 aa15.9■□□□□ 0.14
RFX3-207ENST00000449190 SOGA1O94964 1423 aa15.9■□□□□ 0.14
RFX3-207ENST00000449190 ZNF608Q9ULD9 1512 aaPredicted RBP15.89■□□□□ 0.13
RFX3-207ENST00000449190 POLA1P09884 1462 aaPredicted RBP15.89■□□□□ 0.13
RFX3-207ENST00000449190 MAPK8IP2Q13387 824 aaPredicted RBP15.88■□□□□ 0.13
RFX3-207ENST00000449190 DMRT2Q9Y5R5 561 aa15.88■□□□□ 0.13
RFX3-207ENST00000449190 CUX1P39880 1505 aa15.85■□□□□ 0.13
RFX3-207ENST00000449190 RAD54L2Q9Y4B4 1467 aa15.84■□□□□ 0.13
RFX3-207ENST00000449190 AQRO60306 1485 aaKnown RBP eCLIP15.83■□□□□ 0.12
RFX3-207ENST00000449190 FGD5Q6ZNL6 1462 aa15.83■□□□□ 0.12
RFX3-207ENST00000449190 TARBP1Q13395 1621 aaKnown RBP15.82■□□□□ 0.12
RFX3-207ENST00000449190 TDRD9Q8NDG6 1382 aaKnown RBP15.81■□□□□ 0.12
RFX3-207ENST00000449190 WRNQ14191 1432 aaPredicted RBP eCLIP15.77■□□□□ 0.11
RFX3-207ENST00000449190 EIF4G3O43432 1585 aaKnown RBP15.75■□□□□ 0.11
RFX3-207ENST00000449190 FBLN2P98095 1184 aa15.72■□□□□ 0.11
RFX3-207ENST00000449190 WDR97A6NE52 1622 aa15.71■□□□□ 0.11
RFX3-207ENST00000449190 ABCA10Q8WWZ4 1543 aa15.69■□□□□ 0.1
RFX3-207ENST00000449190 GRIN2BQ13224 1484 aa15.68■□□□□ 0.1
RFX3-207ENST00000449190 CHMP7Q8WUX9 453 aaPredicted RBP15.68■□□□□ 0.1
RFX3-207ENST00000449190 TOP2BQ02880 1626 aa15.68■□□□□ 0.1
RFX3-207ENST00000449190 GAPVD1Q14C86 1478 aa15.66■□□□□ 0.1
RFX3-207ENST00000449190 CACNB1Q02641 598 aaPredicted RBP15.66■□□□□ 0.1
RFX3-207ENST00000449190 BIVM-ERCC5R4GMW8 1640 aa15.65■□□□□ 0.1
RFX3-207ENST00000449190 SYNJ1O43426 1573 aa15.64■□□□□ 0.09
RFX3-207ENST00000449190 SNAPC4Q5SXM2 1469 aa15.63■□□□□ 0.09
RFX3-207ENST00000449190 MAGI1Q96QZ7 1491 aaPredicted RBP15.63■□□□□ 0.09
RFX3-207ENST00000449190 SCAF1Q9H7N4 1312 aaKnown RBP15.61■□□□□ 0.09
RFX3-207ENST00000449190 SYNJ2O15056 1496 aa15.58■□□□□ 0.08
RFX3-207ENST00000449190 TRIM41Q8WV44 630 aa15.57■□□□□ 0.08
RFX3-207ENST00000449190 ABCA5Q8WWZ7 1642 aa15.56■□□□□ 0.08
RFX3-207ENST00000449190 CHD1O14646 1710 aa15.54■□□□□ 0.08
RFX3-207ENST00000449190 FHAD1B1AJZ9 1412 aa15.51■□□□□ 0.07
RFX3-207ENST00000449190 PBRM1Q86U86 1689 aa15.5■□□□□ 0.07
RFX3-207ENST00000449190 ERICH3Q5RHP9 1530 aa15.49■□□□□ 0.07
RFX3-207ENST00000449190 ARHGEF11O15085 1522 aa15.48■□□□□ 0.07
RFX3-207ENST00000449190 CYB5RLQ6IPT4 315 aa15.47■□□□□ 0.07
RFX3-207ENST00000449190 RIMBP3CA6NJZ7 1639 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms