RNA–Protein interactions for RNA: ENST00000457373.5

RFX3-210, Transcript of regulatory factor X3, humanhuman

TSL 5

Gene RFX3, Length 822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-210ENST00000457373 NISCHQ9Y2I1 1504 aa24.29■■□□□ 1.48
RFX3-210ENST00000457373 CHIC1Q5VXU3 224 aa22.94■■□□□ 1.26
RFX3-210ENST00000457373 AEBP2Q6ZN18 517 aaPredicted RBP22.67■■□□□ 1.22
RFX3-210ENST00000457373 CCDC180Q9P1Z9 1646 aa21.55■■□□□ 1.04
RFX3-210ENST00000457373 ABCC9O60706 1549 aa21.12■□□□□ 0.97
RFX3-210ENST00000457373 DCAF8L2P0C7V8 631 aa20.42■□□□□ 0.86
RFX3-210ENST00000457373 PHF23Q9BUL5 403 aaPredicted RBP20.33■□□□□ 0.85
RFX3-210ENST00000457373 RB1CC1Q8TDY2 1594 aa20.29■□□□□ 0.84
RFX3-210ENST00000457373 NACADO15069 1562 aa20.25■□□□□ 0.83
RFX3-210ENST00000457373 ZCCHC6Q5VYS8 1495 aaKnown RBP20.22■□□□□ 0.83
RFX3-210ENST00000457373 MYO15BQ96JP2 1530 aa20.09■□□□□ 0.81
RFX3-210ENST00000457373 DCAF1Q9Y4B6 1507 aa20.04■□□□□ 0.8
RFX3-210ENST00000457373 UNC13AQ9UPW8 1703 aa19.88■□□□□ 0.77
RFX3-210ENST00000457373 PABPN1Q86U42 306 aaKnown RBP eCLIP19.77■□□□□ 0.76
RFX3-210ENST00000457373 SCRIBQ14160 1630 aa19.73■□□□□ 0.75
RFX3-210ENST00000457373 BICRAQ9NZM4 1560 aa19.66■□□□□ 0.74
RFX3-210ENST00000457373 SHROOM4Q9ULL8 1493 aa19.39■□□□□ 0.69
RFX3-210ENST00000457373 DNAJC5BQ9UF47 199 aa19.34■□□□□ 0.69
RFX3-210ENST00000457373 EIF4G1Q04637 1599 aaKnown RBP19.15■□□□□ 0.66
RFX3-210ENST00000457373 CC2D2AQ9P2K1 1620 aa19.08■□□□□ 0.65
RFX3-210ENST00000457373 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
RFX3-210ENST00000457373 PLPPR3Q6T4P5 718 aa18.97■□□□□ 0.63
RFX3-210ENST00000457373 CECR2Q9BXF3 1484 aa18.95■□□□□ 0.62
RFX3-210ENST00000457373 SMARCA4P51532 1647 aa18.85■□□□□ 0.61
RFX3-210ENST00000457373 BAZ1AQ9NRL2 1556 aaPredicted RBP18.82■□□□□ 0.6
RFX3-210ENST00000457373 MROH2BQ7Z745 1585 aa18.74■□□□□ 0.59
RFX3-210ENST00000457373 ATAD2BQ9ULI0 1458 aa18.72■□□□□ 0.59
RFX3-210ENST00000457373 SMARCA2P51531 1590 aa18.69■□□□□ 0.58
RFX3-210ENST00000457373 NCAPD3P42695 1498 aa18.69■□□□□ 0.58
RFX3-210ENST00000457373 PEG3Q9GZU2 1588 aa18.61■□□□□ 0.57
RFX3-210ENST00000457373 HMGXB3Q12766 1538 aa18.59■□□□□ 0.57
RFX3-210ENST00000457373 BAZ1BQ9UIG0 1483 aaKnown RBP18.58■□□□□ 0.57
RFX3-210ENST00000457373 WIZO95785 1651 aa18.57■□□□□ 0.56
RFX3-210ENST00000457373 RSF1Q96T23 1441 aaPredicted RBP18.53■□□□□ 0.56
RFX3-210ENST00000457373 TOP2AP11388 1531 aaKnown RBP18.33■□□□□ 0.52
RFX3-210ENST00000457373 NESP48681 1621 aa18.28■□□□□ 0.52
RFX3-210ENST00000457373 SUPT5HO00267 1087 aaKnown RBP18.2■□□□□ 0.5
RFX3-210ENST00000457373 LAMC3Q9Y6N6 1575 aa18.2■□□□□ 0.5
RFX3-210ENST00000457373 ERCC6Q03468 1493 aa18.19■□□□□ 0.5
RFX3-210ENST00000457373 CADPSQ9ULU8 1353 aa18.17■□□□□ 0.5
RFX3-210ENST00000457373 CCDC88BA6NC98 1476 aa18.14■□□□□ 0.49
RFX3-210ENST00000457373 PDS5BQ9NTI5 1447 aa18.08■□□□□ 0.49
RFX3-210ENST00000457373 KIF21AQ7Z4S6 1674 aa18.08■□□□□ 0.48
RFX3-210ENST00000457373 CFTRP13569 1480 aa18.05■□□□□ 0.48
RFX3-210ENST00000457373 FANCD2Q9BXW9 1451 aa17.97■□□□□ 0.47
RFX3-210ENST00000457373 PRDM2Q13029 1718 aa17.96■□□□□ 0.47
RFX3-210ENST00000457373 THOC2Q8NI27 1593 aaKnown RBP17.96■□□□□ 0.46
RFX3-210ENST00000457373 CEP164Q9UPV0 1460 aa17.94■□□□□ 0.46
RFX3-210ENST00000457373 CUX2O14529 1486 aa17.93■□□□□ 0.46
RFX3-210ENST00000457373 MRC2Q9UBG0 1479 aa17.89■□□□□ 0.45
RFX3-210ENST00000457373 ADRA2BP18089 450 aa17.83■□□□□ 0.44
RFX3-210ENST00000457373 WDR62O43379 1518 aa17.82■□□□□ 0.44
RFX3-210ENST00000457373 URB2Q14146 1524 aaKnown RBP17.78■□□□□ 0.44
RFX3-210ENST00000457373 TOPBP1Q92547 1522 aa17.68■□□□□ 0.42
RFX3-210ENST00000457373 ABCC8Q09428 1581 aa17.66■□□□□ 0.42
RFX3-210ENST00000457373 DNMBPQ6XZF7 1577 aa17.66■□□□□ 0.42
RFX3-210ENST00000457373 PPP6R1Q9UPN7 881 aa17.64■□□□□ 0.41
RFX3-210ENST00000457373 FOXD1Q16676 465 aa17.57■□□□□ 0.4
RFX3-210ENST00000457373 CUX1P39880 1505 aa17.57■□□□□ 0.4
RFX3-210ENST00000457373 IFT140Q96RY7 1462 aa17.55■□□□□ 0.4
RFX3-210ENST00000457373 POLA1P09884 1462 aaPredicted RBP17.53■□□□□ 0.4
RFX3-210ENST00000457373 FGD5Q6ZNL6 1462 aa17.51■□□□□ 0.39
RFX3-210ENST00000457373 KCNA4P22459 653 aa17.51■□□□□ 0.39
RFX3-210ENST00000457373 RAD54L2Q9Y4B4 1467 aa17.5■□□□□ 0.39
RFX3-210ENST00000457373 ZNF608Q9ULD9 1512 aaPredicted RBP17.49■□□□□ 0.39
RFX3-210ENST00000457373 SOGA1O94964 1423 aa17.48■□□□□ 0.39
RFX3-210ENST00000457373 TARBP1Q13395 1621 aaKnown RBP17.48■□□□□ 0.39
RFX3-210ENST00000457373 WRNQ14191 1432 aaPredicted RBP eCLIP17.47■□□□□ 0.39
RFX3-210ENST00000457373 SYNJ1O43426 1573 aa17.44■□□□□ 0.38
RFX3-210ENST00000457373 TOP2BQ02880 1626 aa17.43■□□□□ 0.38
RFX3-210ENST00000457373 BIVM-ERCC5R4GMW8 1640 aa17.43■□□□□ 0.38
RFX3-210ENST00000457373 AQRO60306 1485 aaKnown RBP eCLIP17.42■□□□□ 0.38
RFX3-210ENST00000457373 EIF4G3O43432 1585 aaKnown RBP17.41■□□□□ 0.38
RFX3-210ENST00000457373 TDRD9Q8NDG6 1382 aaKnown RBP17.4■□□□□ 0.38
RFX3-210ENST00000457373 DNAJC5Q9H3Z4 198 aa17.36■□□□□ 0.37
RFX3-210ENST00000457373 WDR97A6NE52 1622 aa17.36■□□□□ 0.37
RFX3-210ENST00000457373 EHMT2Q96KQ7 1210 aa17.33■□□□□ 0.36
RFX3-210ENST00000457373 ABCA10Q8WWZ4 1543 aa17.31■□□□□ 0.36
RFX3-210ENST00000457373 GAPVD1Q14C86 1478 aa17.27■□□□□ 0.36
RFX3-210ENST00000457373 PBRM1Q86U86 1689 aa17.26■□□□□ 0.35
RFX3-210ENST00000457373 GRIN2BQ13224 1484 aa17.25■□□□□ 0.35
RFX3-210ENST00000457373 FBLN2P98095 1184 aa17.25■□□□□ 0.35
RFX3-210ENST00000457373 OSCARQ8IYS5 282 aa17.25■□□□□ 0.35
RFX3-210ENST00000457373 ABCA5Q8WWZ7 1642 aa17.25■□□□□ 0.35
RFX3-210ENST00000457373 SNAPC4Q5SXM2 1469 aa17.24■□□□□ 0.35
RFX3-210ENST00000457373 CHD1O14646 1710 aa17.23■□□□□ 0.35
RFX3-210ENST00000457373 CHMP7Q8WUX9 453 aaPredicted RBP17.18■□□□□ 0.34
RFX3-210ENST00000457373 MAGI1Q96QZ7 1491 aaPredicted RBP17.18■□□□□ 0.34
RFX3-210ENST00000457373 TRIM41Q8WV44 630 aa17.16■□□□□ 0.34
RFX3-210ENST00000457373 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
RFX3-210ENST00000457373 KIF27Q86VH2 1401 aa17.11■□□□□ 0.33
RFX3-210ENST00000457373 ERICH3Q5RHP9 1530 aa17.11■□□□□ 0.33
RFX3-210ENST00000457373 ADAMTS12P58397 1594 aa17.08■□□□□ 0.32
RFX3-210ENST00000457373 FHAD1B1AJZ9 1412 aa17.06■□□□□ 0.32
RFX3-210ENST00000457373 IGF1RP08069 1367 aa17.03■□□□□ 0.32
RFX3-210ENST00000457373 GRIN2AQ12879 1464 aa17.03■□□□□ 0.32
RFX3-210ENST00000457373 RUSC2Q8N2Y8 1516 aa17.01■□□□□ 0.31
RFX3-210ENST00000457373 CUL7Q14999 1698 aa16.97■□□□□ 0.31
RFX3-210ENST00000457373 CLASP1Q7Z460 1538 aa16.97■□□□□ 0.31
RFX3-210ENST00000457373 RIMBP3CA6NJZ7 1639 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms