RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-209ENST00000451859 AEBP2Q6ZN18 517 aaPredicted RBP25.99■■□□□ 1.75
RFX3-209ENST00000451859 CHIC1Q5VXU3 224 aa24.19■■□□□ 1.46
RFX3-209ENST00000451859 SENP3Q9H4L4 574 aaPredicted RBP22.13■■□□□ 1.13
RFX3-209ENST00000451859 PHF23Q9BUL5 403 aaPredicted RBP21.82■■□□□ 1.08
RFX3-209ENST00000451859 NISCHQ9Y2I1 1504 aa21.45■■□□□ 1.02
RFX3-209ENST00000451859 FOXD1Q16676 465 aa20.75■□□□□ 0.91
RFX3-209ENST00000451859 POTEDQ86YR6 584 aa19.88■□□□□ 0.77
RFX3-209ENST00000451859 MSH5O43196 834 aa19.52■□□□□ 0.72
RFX3-209ENST00000451859 CCDC180Q9P1Z9 1646 aa19.24■□□□□ 0.67
RFX3-209ENST00000451859 PIAS4Q8N2W9 510 aaPredicted RBP19.21■□□□□ 0.67
RFX3-209ENST00000451859 PPP6R1Q9UPN7 881 aa19.09■□□□□ 0.65
RFX3-209ENST00000451859 PLPPR3Q6T4P5 718 aa19.07■□□□□ 0.64
RFX3-209ENST00000451859 ABCC9O60706 1549 aa19.05■□□□□ 0.64
RFX3-209ENST00000451859 ADRA2BP18089 450 aa18.95■□□□□ 0.62
RFX3-209ENST00000451859 RB1CC1Q8TDY2 1594 aa18.19■□□□□ 0.5
RFX3-209ENST00000451859 DCAF8L2P0C7V8 631 aa18.08■□□□□ 0.48
RFX3-209ENST00000451859 NACADO15069 1562 aa18.08■□□□□ 0.48
RFX3-209ENST00000451859 UNC13AQ9UPW8 1703 aa17.94■□□□□ 0.46
RFX3-209ENST00000451859 ZCCHC6Q5VYS8 1495 aaKnown RBP17.82■□□□□ 0.44
RFX3-209ENST00000451859 MYO15BQ96JP2 1530 aa17.81■□□□□ 0.44
RFX3-209ENST00000451859 PABPN1Q86U42 306 aaKnown RBP eCLIP17.73■□□□□ 0.43
RFX3-209ENST00000451859 DCAF1Q9Y4B6 1507 aa17.67■□□□□ 0.42
RFX3-209ENST00000451859 BICRAQ9NZM4 1560 aa17.66■□□□□ 0.42
RFX3-209ENST00000451859 DNAJC5BQ9UF47 199 aa17.63■□□□□ 0.41
RFX3-209ENST00000451859 SCRIBQ14160 1630 aa17.59■□□□□ 0.41
RFX3-209ENST00000451859 MAPK8IP2Q13387 824 aaPredicted RBP17.57■□□□□ 0.4
RFX3-209ENST00000451859 DMRT2Q9Y5R5 561 aa17.52■□□□□ 0.4
RFX3-209ENST00000451859 SHROOM4Q9ULL8 1493 aa17.33■□□□□ 0.37
RFX3-209ENST00000451859 SCAF1Q9H7N4 1312 aaKnown RBP17.24■□□□□ 0.35
RFX3-209ENST00000451859 CC2D2AQ9P2K1 1620 aa17.23■□□□□ 0.35
RFX3-209ENST00000451859 EIF4G1Q04637 1599 aaKnown RBP17.21■□□□□ 0.35
RFX3-209ENST00000451859 CECR2Q9BXF3 1484 aa17.11■□□□□ 0.33
RFX3-209ENST00000451859 CACNB1Q02641 598 aaPredicted RBP17.01■□□□□ 0.31
RFX3-209ENST00000451859 SMARCA4P51532 1647 aa16.75■□□□□ 0.27
RFX3-209ENST00000451859 DCAF8L1A6NGE4 600 aa16.72■□□□□ 0.27
RFX3-209ENST00000451859 HOXD11P31277 338 aaPredicted RBP16.72■□□□□ 0.27
RFX3-209ENST00000451859 PPP4R3CPQ6ZMV5 832 aa16.68■□□□□ 0.26
RFX3-209ENST00000451859 RNF39Q9H2S5 420 aa16.67■□□□□ 0.26
RFX3-209ENST00000451859 BAZ1AQ9NRL2 1556 aaPredicted RBP16.65■□□□□ 0.26
RFX3-209ENST00000451859 ATAD2BQ9ULI0 1458 aa16.65■□□□□ 0.26
RFX3-209ENST00000451859 SMARCA2P51531 1590 aa16.64■□□□□ 0.25
RFX3-209ENST00000451859 NCAPD3P42695 1498 aa16.62■□□□□ 0.25
RFX3-209ENST00000451859 HMGXB3Q12766 1538 aa16.58■□□□□ 0.24
RFX3-209ENST00000451859 MROH2BQ7Z745 1585 aa16.55■□□□□ 0.24
RFX3-209ENST00000451859 BAZ1BQ9UIG0 1483 aaKnown RBP16.54■□□□□ 0.24
RFX3-209ENST00000451859 PEG3Q9GZU2 1588 aa16.51■□□□□ 0.23
RFX3-209ENST00000451859 CNKSR2Q8WXI2 1034 aa16.45■□□□□ 0.22
RFX3-209ENST00000451859 WIZO95785 1651 aa16.44■□□□□ 0.22
RFX3-209ENST00000451859 RNF216Q9NWF9 866 aaPredicted RBP16.44■□□□□ 0.22
RFX3-209ENST00000451859 ERCC6Q03468 1493 aa16.43■□□□□ 0.22
RFX3-209ENST00000451859 NESP48681 1621 aa16.41■□□□□ 0.22
RFX3-209ENST00000451859 C1QBPQ07021 282 aaKnown RBP16.36■□□□□ 0.21
RFX3-209ENST00000451859 LAMC3Q9Y6N6 1575 aa16.31■□□□□ 0.2
RFX3-209ENST00000451859 KIF21AQ7Z4S6 1674 aa16.3■□□□□ 0.2
RFX3-209ENST00000451859 CUX2O14529 1486 aa16.27■□□□□ 0.19
RFX3-209ENST00000451859 THOC2Q8NI27 1593 aaKnown RBP16.23■□□□□ 0.19
RFX3-209ENST00000451859 RSF1Q96T23 1441 aaPredicted RBP16.23■□□□□ 0.19
RFX3-209ENST00000451859 TOP2AP11388 1531 aaKnown RBP16.18■□□□□ 0.18
RFX3-209ENST00000451859 PDS5BQ9NTI5 1447 aa16.16■□□□□ 0.18
RFX3-209ENST00000451859 CADPSQ9ULU8 1353 aa16.14■□□□□ 0.17
RFX3-209ENST00000451859 PRDM2Q13029 1718 aa16.07■□□□□ 0.16
RFX3-209ENST00000451859 MRC2Q9UBG0 1479 aa16.04■□□□□ 0.16
RFX3-209ENST00000451859 CEP164Q9UPV0 1460 aa16.03■□□□□ 0.16
RFX3-209ENST00000451859 FANCD2Q9BXW9 1451 aa16.02■□□□□ 0.15
RFX3-209ENST00000451859 DNAJC5Q9H3Z4 198 aa16.01■□□□□ 0.15
RFX3-209ENST00000451859 WDR62O43379 1518 aa16■□□□□ 0.15
RFX3-209ENST00000451859 CFTRP13569 1480 aa16■□□□□ 0.15
RFX3-209ENST00000451859 CCDC88BA6NC98 1476 aa15.97■□□□□ 0.15
RFX3-209ENST00000451859 URB2Q14146 1524 aaKnown RBP15.89■□□□□ 0.13
RFX3-209ENST00000451859 NCBP3Q53F19 620 aaKnown RBP15.83■□□□□ 0.12
RFX3-209ENST00000451859 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.83■□□□□ 0.127e-6■□□□□ 10.8
RFX3-209ENST00000451859 TOPBP1Q92547 1522 aa15.74■□□□□ 0.11
RFX3-209ENST00000451859 DNMBPQ6XZF7 1577 aa15.72■□□□□ 0.11
RFX3-209ENST00000451859 SUPT5HO00267 1087 aaKnown RBP15.72■□□□□ 0.11
RFX3-209ENST00000451859 NPM3O75607 178 aaKnown RBP15.7■□□□□ 0.1
RFX3-209ENST00000451859 ABCC8Q09428 1581 aa15.67■□□□□ 0.1
RFX3-209ENST00000451859 IFT140Q96RY7 1462 aa15.66■□□□□ 0.1
RFX3-209ENST00000451859 ZNF608Q9ULD9 1512 aaPredicted RBP15.66■□□□□ 0.1
RFX3-209ENST00000451859 EIF4G3O43432 1585 aaKnown RBP15.65■□□□□ 0.1
RFX3-209ENST00000451859 TARBP1Q13395 1621 aaKnown RBP15.61■□□□□ 0.09
RFX3-209ENST00000451859 POLA1P09884 1462 aaPredicted RBP15.59■□□□□ 0.09
RFX3-209ENST00000451859 CHD1O14646 1710 aa15.57■□□□□ 0.08
RFX3-209ENST00000451859 CUX1P39880 1505 aa15.55■□□□□ 0.08
RFX3-209ENST00000451859 RAD54L2Q9Y4B4 1467 aa15.55■□□□□ 0.08
RFX3-209ENST00000451859 FGD5Q6ZNL6 1462 aa15.54■□□□□ 0.08
RFX3-209ENST00000451859 U3KPZ7 1027 aaPredicted RBP15.54■□□□□ 0.08
RFX3-209ENST00000451859 AQRO60306 1485 aaKnown RBP eCLIP15.53■□□□□ 0.08
RFX3-209ENST00000451859 OSCARQ8IYS5 282 aa15.53■□□□□ 0.08
RFX3-209ENST00000451859 TRIM41Q8WV44 630 aa15.52■□□□□ 0.08
RFX3-209ENST00000451859 SOGA1O94964 1423 aa15.5■□□□□ 0.07
RFX3-209ENST00000451859 WDR97A6NE52 1622 aa15.48■□□□□ 0.07
RFX3-209ENST00000451859 POTEHQ6S545 545 aa15.46■□□□□ 0.07
RFX3-209ENST00000451859 TDRD9Q8NDG6 1382 aaKnown RBP15.46■□□□□ 0.07
RFX3-209ENST00000451859 PBRM1Q86U86 1689 aa15.45■□□□□ 0.06
RFX3-209ENST00000451859 DSG3P32926 999 aa15.45■□□□□ 0.06
RFX3-209ENST00000451859 SPINK5Q9NQ38 1064 aaPredicted RBP15.45■□□□□ 0.06
RFX3-209ENST00000451859 RIMBP3CA6NJZ7 1639 aa15.44■□□□□ 0.06
RFX3-209ENST00000451859 RIMBP3BA6NNM3 1639 aa15.44■□□□□ 0.06
RFX3-209ENST00000451859 RIMBP3Q9UFD9 1639 aa15.44■□□□□ 0.06
RFX3-209ENST00000451859 FBLN2P98095 1184 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms