RNA–Protein interactions for RNA: ENST00000373222.3

CHD6-202, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 2,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-202ENST00000373222 AEBP2Q6ZN18 517 aaPredicted RBP18.75■□□□□ 0.59
CHD6-202ENST00000373222 CHIC1Q5VXU3 224 aa17.71■□□□□ 0.43
CHD6-202ENST00000373222 SENP3Q9H4L4 574 aaPredicted RBP16.33■□□□□ 0.2
CHD6-202ENST00000373222 PHF23Q9BUL5 403 aaPredicted RBP15.88■□□□□ 0.13
CHD6-202ENST00000373222 POTEDQ86YR6 584 aa15.72■□□□□ 0.11
CHD6-202ENST00000373222 FOXD1Q16676 465 aa15.19■□□□□ 0.02
CHD6-202ENST00000373222 MSH5O43196 834 aa14.72□□□□□ -0.05
CHD6-202ENST00000373222 PIAS4Q8N2W9 510 aaPredicted RBP13.99□□□□□ -0.17
CHD6-202ENST00000373222 PPP6R1Q9UPN7 881 aa13.44□□□□□ -0.26
CHD6-202ENST00000373222 ADRA2BP18089 450 aa13.35□□□□□ -0.27
CHD6-202ENST00000373222 PLPPR3Q6T4P5 718 aa13.3□□□□□ -0.28
CHD6-202ENST00000373222 NISCHQ9Y2I1 1504 aa13.27□□□□□ -0.29
CHD6-202ENST00000373222 CACNB1Q02641 598 aaPredicted RBP13.06□□□□□ -0.32
CHD6-202ENST00000373222 DMRT2Q9Y5R5 561 aa12.79□□□□□ -0.36
CHD6-202ENST00000373222 MAPK8IP2Q13387 824 aaPredicted RBP12.49□□□□□ -0.41
CHD6-202ENST00000373222 SCAF1Q9H7N4 1312 aaKnown RBP12.48□□□□□ -0.41
CHD6-202ENST00000373222 RNF39Q9H2S5 420 aa12.39□□□□□ -0.43
CHD6-202ENST00000373222 C1QBPQ07021 282 aaKnown RBP12.25□□□□□ -0.45
CHD6-202ENST00000373222 POTEHQ6S545 545 aa12.16□□□□□ -0.46
CHD6-202ENST00000373222 DCAF8L1A6NGE4 600 aa12.16□□□□□ -0.46
CHD6-202ENST00000373222 SLC24A1O60721 1099 aa12.12□□□□□ -0.47
CHD6-202ENST00000373222 HOXD11P31277 338 aaPredicted RBP11.99□□□□□ -0.49
CHD6-202ENST00000373222 DNAJC5BQ9UF47 199 aa11.93□□□□□ -0.5
CHD6-202ENST00000373222 EHMT2Q96KQ7 1210 aa11.85□□□□□ -0.51
CHD6-202ENST00000373222 RNF216Q9NWF9 866 aaPredicted RBP11.67□□□□□ -0.54
CHD6-202ENST00000373222 CNKSR2Q8WXI2 1034 aa11.54□□□□□ -0.56
CHD6-202ENST00000373222 SHROOM4Q9ULL8 1493 aa11.49□□□□□ -0.57
CHD6-202ENST00000373222 PPP4R3CPQ6ZMV5 832 aa11.48□□□□□ -0.57
CHD6-202ENST00000373222 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.35□□□□□ -0.598e-7■■■□□ 15.2
CHD6-202ENST00000373222 DSG3P32926 999 aa11.28□□□□□ -0.6
CHD6-202ENST00000373222 RTN4Q9NQC3 1192 aaKnown RBP11.24□□□□□ -0.61
CHD6-202ENST00000373222 CCDC180Q9P1Z9 1646 aa11.23□□□□□ -0.61
CHD6-202ENST00000373222 ZCCHC6Q5VYS8 1495 aaKnown RBP11.21□□□□□ -0.61
CHD6-202ENST00000373222 SUPT5HO00267 1087 aaKnown RBP11.21□□□□□ -0.61
CHD6-202ENST00000373222 DCAF8L2P0C7V8 631 aa11.17□□□□□ -0.62
CHD6-202ENST00000373222 CSRNP3Q8WYN3 585 aa11.17□□□□□ -0.62
CHD6-202ENST00000373222 KCNA4P22459 653 aa11.14□□□□□ -0.63
CHD6-202ENST00000373222 CAPN15O75808 1086 aa11.11□□□□□ -0.63
CHD6-202ENST00000373222 SP7Q8TDD2 431 aaPredicted RBP11.01□□□□□ -0.65
CHD6-202ENST00000373222 SPINK5Q9NQ38 1064 aaPredicted RBP11.01□□□□□ -0.65
CHD6-202ENST00000373222 AMER1Q5JTC6 1135 aaPredicted RBP11□□□□□ -0.65
CHD6-202ENST00000373222 U3KPZ7 1027 aaPredicted RBP10.98□□□□□ -0.65
CHD6-202ENST00000373222 RBM42Q9BTD8 480 aaKnown RBP10.93□□□□□ -0.66
CHD6-202ENST00000373222 CHRDL2Q6WN34 429 aa10.91□□□□□ -0.66
CHD6-202ENST00000373222 NCBP3Q53F19 620 aaKnown RBP10.9□□□□□ -0.67
CHD6-202ENST00000373222 MYO15BQ96JP2 1530 aa10.87□□□□□ -0.67
CHD6-202ENST00000373222 APLP2Q06481 763 aa10.85□□□□□ -0.67
CHD6-202ENST00000373222 ZNF219Q9P2Y4 722 aaPredicted RBP10.79□□□□□ -0.68
CHD6-202ENST00000373222 DCAF1Q9Y4B6 1507 aa10.77□□□□□ -0.69
CHD6-202ENST00000373222 SLC4A1APQ9BWU0 796 aaKnown RBP10.7□□□□□ -0.7
CHD6-202ENST00000373222 SCRIBQ14160 1630 aa10.69□□□□□ -0.7
CHD6-202ENST00000373222 ABCB7O75027 752 aa10.68□□□□□ -0.7
CHD6-202ENST00000373222 TRHP20396 242 aaPredicted RBP10.68□□□□□ -0.7
CHD6-202ENST00000373222 DAXXQ9UER7 740 aaPredicted RBP10.67□□□□□ -0.7
CHD6-202ENST00000373222 ABCC9O60706 1549 aa10.6□□□□□ -0.71
CHD6-202ENST00000373222 LOC105371045A0A1W2PR82 267 aa10.59□□□□□ -0.71
CHD6-202ENST00000373222 PRKCSHP14314 528 aaPredicted RBP10.58□□□□□ -0.72
CHD6-202ENST00000373222 NPM3O75607 178 aaKnown RBP10.58□□□□□ -0.72
CHD6-202ENST00000373222 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.56□□□□□ -0.72
CHD6-202ENST00000373222 HNRNPUL2Q1KMD3 747 aaKnown RBP10.56□□□□□ -0.72
CHD6-202ENST00000373222 RSF1Q96T23 1441 aaPredicted RBP10.52□□□□□ -0.72
CHD6-202ENST00000373222 PCGF6Q9BYE7 350 aa10.51□□□□□ -0.73
CHD6-202ENST00000373222 RB1CC1Q8TDY2 1594 aa10.48□□□□□ -0.73
CHD6-202ENST00000373222 HAX1O00165 279 aa10.48□□□□□ -0.73
CHD6-202ENST00000373222 CECR2Q9BXF3 1484 aa10.46□□□□□ -0.73
CHD6-202ENST00000373222 AKT1S1Q96B36 256 aa10.45□□□□□ -0.74
CHD6-202ENST00000373222 PIP4P2Q8N4L2 257 aa10.44□□□□□ -0.74
CHD6-202ENST00000373222 SAMD1Q6SPF0 538 aaPredicted RBP10.41□□□□□ -0.74
CHD6-202ENST00000373222 FAM9AQ8IZU1 332 aaPredicted RBP10.4□□□□□ -0.74
CHD6-202ENST00000373222 HRCP23327 699 aa10.4□□□□□ -0.75
CHD6-202ENST00000373222 MROH2BQ7Z745 1585 aa10.39□□□□□ -0.75
CHD6-202ENST00000373222 NACADO15069 1562 aa10.38□□□□□ -0.75
CHD6-202ENST00000373222 PPARGC1BQ86YN6 1023 aaKnown RBP10.37□□□□□ -0.75
CHD6-202ENST00000373222 WIZO95785 1651 aa10.36□□□□□ -0.75
CHD6-202ENST00000373222 TRIM41Q8WV44 630 aa10.35□□□□□ -0.75
CHD6-202ENST00000373222 ZBTB22O15209 634 aa10.34□□□□□ -0.75
CHD6-202ENST00000373222 LHX8Q68G74 356 aa10.31□□□□□ -0.76
CHD6-202ENST00000373222 SLC4A2P04920 1241 aa10.3□□□□□ -0.76
CHD6-202ENST00000373222 FXR2P51116 673 aaKnown RBP eCLIP10.3□□□□□ -0.761e-6■■■□□ 16.5
CHD6-202ENST00000373222 PLSCR2Q9NRY7 297 aa10.3□□□□□ -0.76
CHD6-202ENST00000373222 TAOK2Q9UL54 1235 aa10.3□□□□□ -0.76
CHD6-202ENST00000373222 REM2Q8IYK8 340 aaPredicted RBP10.27□□□□□ -0.77
CHD6-202ENST00000373222 TIMELESSQ9UNS1 1208 aa10.26□□□□□ -0.77
CHD6-202ENST00000373222 UNC13AQ9UPW8 1703 aa10.26□□□□□ -0.77
CHD6-202ENST00000373222 ARXQ96QS3 562 aa10.25□□□□□ -0.77
CHD6-202ENST00000373222 POLA2Q14181 598 aa10.22□□□□□ -0.77
CHD6-202ENST00000373222 BCANQ96GW7 911 aa10.2□□□□□ -0.78
CHD6-202ENST00000373222 BAZ1AQ9NRL2 1556 aaPredicted RBP10.19□□□□□ -0.78
CHD6-202ENST00000373222 TRIM26Q12899 539 aaPredicted RBP10.18□□□□□ -0.78
CHD6-202ENST00000373222 EVX2Q03828 476 aa10.17□□□□□ -0.78
CHD6-202ENST00000373222 PABPN1Q86U42 306 aaKnown RBP eCLIP10.17□□□□□ -0.78
CHD6-202ENST00000373222 PLCB2Q00722 1185 aa10.15□□□□□ -0.78
CHD6-202ENST00000373222 ZBTB12Q9Y330 459 aaPredicted RBP10.15□□□□□ -0.78
CHD6-202ENST00000373222 ABCC8Q09428 1581 aa10.15□□□□□ -0.78
CHD6-202ENST00000373222 EIF4G1Q04637 1599 aaKnown RBP10.15□□□□□ -0.79
CHD6-202ENST00000373222 SMARCA4P51532 1647 aa10.14□□□□□ -0.79
CHD6-202ENST00000373222 PITPNM1O00562 1244 aa10.13□□□□□ -0.79
CHD6-202ENST00000373222 TULP1O00294 542 aaPredicted RBP10.12□□□□□ -0.79
CHD6-202ENST00000373222 TPRNQ4KMQ1 711 aa10.12□□□□□ -0.79
CHD6-202ENST00000373222 CCDC88BA6NC98 1476 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms