RNA–Protein interactions for RNA: ENST00000519587.1

SDC2-203, Transcript of syndecan 2, humanhuman

TSL 4

Gene SDC2, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-203ENST00000519587 NISCHQ9Y2I1 1504 aa33.38■■■□□ 2.93
SDC2-203ENST00000519587 CCDC180Q9P1Z9 1646 aa29.58■■■□□ 2.33
SDC2-203ENST00000519587 ABCC9O60706 1549 aa28.81■■■□□ 2.2
SDC2-203ENST00000519587 ZCCHC6Q5VYS8 1495 aaKnown RBP27.94■■■□□ 2.06
SDC2-203ENST00000519587 DCAF1Q9Y4B6 1507 aa27.7■■■□□ 2.02
SDC2-203ENST00000519587 NACADO15069 1562 aa27.63■■■□□ 2.01
SDC2-203ENST00000519587 MYO15BQ96JP2 1530 aa27.62■■■□□ 2.01
SDC2-203ENST00000519587 DCAF8L2P0C7V8 631 aa27.59■■■□□ 2.01
SDC2-203ENST00000519587 DNAJC5BQ9UF47 199 aa27.58■■■□□ 2.01
SDC2-203ENST00000519587 RB1CC1Q8TDY2 1594 aa27.56■■■□□ 2
SDC2-203ENST00000519587 SCRIBQ14160 1630 aa26.95■■□□□ 1.91
SDC2-203ENST00000519587 UNC13AQ9UPW8 1703 aa26.93■■□□□ 1.9
SDC2-203ENST00000519587 PABPN1Q86U42 306 aaKnown RBP eCLIP26.65■■□□□ 1.86
SDC2-203ENST00000519587 BICRAQ9NZM4 1560 aa26.61■■□□□ 1.85
SDC2-203ENST00000519587 SHROOM4Q9ULL8 1493 aa26.61■■□□□ 1.85
SDC2-203ENST00000519587 CECR2Q9BXF3 1484 aa26.02■■□□□ 1.76
SDC2-203ENST00000519587 CC2D2AQ9P2K1 1620 aa26.01■■□□□ 1.75
SDC2-203ENST00000519587 EIF4G1Q04637 1599 aaKnown RBP25.9■■□□□ 1.74
SDC2-203ENST00000519587 BAZ1AQ9NRL2 1556 aaPredicted RBP25.9■■□□□ 1.74
SDC2-203ENST00000519587 DNAJC5Q9H3Z4 198 aa25.86■■□□□ 1.73
SDC2-203ENST00000519587 SMARCA4P51532 1647 aa25.85■■□□□ 1.73
SDC2-203ENST00000519587 MROH2BQ7Z745 1585 aa25.7■■□□□ 1.71
SDC2-203ENST00000519587 SMARCA2P51531 1590 aa25.59■■□□□ 1.69
SDC2-203ENST00000519587 PEG3Q9GZU2 1588 aa25.58■■□□□ 1.69
SDC2-203ENST00000519587 RSF1Q96T23 1441 aaPredicted RBP25.58■■□□□ 1.69
SDC2-203ENST00000519587 ATAD2BQ9ULI0 1458 aa25.51■■□□□ 1.67
SDC2-203ENST00000519587 WIZO95785 1651 aa25.48■■□□□ 1.67
SDC2-203ENST00000519587 HMGXB3Q12766 1538 aa25.42■■□□□ 1.66
SDC2-203ENST00000519587 NCAPD3P42695 1498 aa25.42■■□□□ 1.66
SDC2-203ENST00000519587 BAZ1BQ9UIG0 1483 aaKnown RBP25.39■■□□□ 1.65
SDC2-203ENST00000519587 TOP2AP11388 1531 aaKnown RBP25.29■■□□□ 1.64
SDC2-203ENST00000519587 SUPT5HO00267 1087 aaKnown RBP25.27■■□□□ 1.64
SDC2-203ENST00000519587 CUX2O14529 1486 aa25.14■■□□□ 1.61
SDC2-203ENST00000519587 ERCC6Q03468 1493 aa24.94■■□□□ 1.58
SDC2-203ENST00000519587 CCDC88BA6NC98 1476 aa24.9■■□□□ 1.58
SDC2-203ENST00000519587 LAMC3Q9Y6N6 1575 aa24.75■■□□□ 1.55
SDC2-203ENST00000519587 PRDM2Q13029 1718 aa24.69■■□□□ 1.54
SDC2-203ENST00000519587 CADPSQ9ULU8 1353 aa24.69■■□□□ 1.54
SDC2-203ENST00000519587 CFTRP13569 1480 aa24.67■■□□□ 1.54
SDC2-203ENST00000519587 NESP48681 1621 aa24.61■■□□□ 1.53
SDC2-203ENST00000519587 PDS5BQ9NTI5 1447 aa24.52■■□□□ 1.52
SDC2-203ENST00000519587 THOC2Q8NI27 1593 aaKnown RBP24.48■■□□□ 1.51
SDC2-203ENST00000519587 TRIM41Q8WV44 630 aa24.46■■□□□ 1.51
SDC2-203ENST00000519587 KIF21AQ7Z4S6 1674 aa24.45■■□□□ 1.5
SDC2-203ENST00000519587 FANCD2Q9BXW9 1451 aa24.45■■□□□ 1.5
SDC2-203ENST00000519587 CEP164Q9UPV0 1460 aa24.41■■□□□ 1.5
SDC2-203ENST00000519587 MRC2Q9UBG0 1479 aa24.26■■□□□ 1.47
SDC2-203ENST00000519587 ABCC8Q09428 1581 aa24.2■■□□□ 1.46
SDC2-203ENST00000519587 DNMBPQ6XZF7 1577 aa24.18■■□□□ 1.46
SDC2-203ENST00000519587 WDR62O43379 1518 aa24.16■■□□□ 1.46
SDC2-203ENST00000519587 WRNQ14191 1432 aaPredicted RBP eCLIP24.16■■□□□ 1.46
SDC2-203ENST00000519587 URB2Q14146 1524 aaKnown RBP24.15■■□□□ 1.46
SDC2-203ENST00000519587 TOPBP1Q92547 1522 aa24.11■■□□□ 1.45
SDC2-203ENST00000519587 CUX1P39880 1505 aa24.1■■□□□ 1.45
SDC2-203ENST00000519587 BIVM-ERCC5R4GMW8 1640 aa24.1■■□□□ 1.45
SDC2-203ENST00000519587 TOP2BQ02880 1626 aa24.09■■□□□ 1.45
SDC2-203ENST00000519587 SYNJ1O43426 1573 aa24.08■■□□□ 1.44
SDC2-203ENST00000519587 FGD5Q6ZNL6 1462 aa23.96■■□□□ 1.43
SDC2-203ENST00000519587 POLA1P09884 1462 aaPredicted RBP23.94■■□□□ 1.42
SDC2-203ENST00000519587 CHIC1Q5VXU3 224 aa23.87■■□□□ 1.41
SDC2-203ENST00000519587 IFT140Q96RY7 1462 aa23.86■■□□□ 1.41
SDC2-203ENST00000519587 TARBP1Q13395 1621 aaKnown RBP23.82■■□□□ 1.4
SDC2-203ENST00000519587 SOGA1O94964 1423 aa23.82■■□□□ 1.4
SDC2-203ENST00000519587 WDR97A6NE52 1622 aa23.81■■□□□ 1.4
SDC2-203ENST00000519587 OSCARQ8IYS5 282 aa23.8■■□□□ 1.4
SDC2-203ENST00000519587 RAD54L2Q9Y4B4 1467 aa23.77■■□□□ 1.4
SDC2-203ENST00000519587 ABCA10Q8WWZ4 1543 aa23.76■■□□□ 1.39
SDC2-203ENST00000519587 EIF4G3O43432 1585 aaKnown RBP23.67■■□□□ 1.38
SDC2-203ENST00000519587 RIMBP3CA6NJZ7 1639 aa23.66■■□□□ 1.38
SDC2-203ENST00000519587 RIMBP3BA6NNM3 1639 aa23.66■■□□□ 1.38
SDC2-203ENST00000519587 ABCA5Q8WWZ7 1642 aa23.66■■□□□ 1.38
SDC2-203ENST00000519587 RIMBP3Q9UFD9 1639 aa23.66■■□□□ 1.38
SDC2-203ENST00000519587 KIF27Q86VH2 1401 aa23.63■■□□□ 1.37
SDC2-203ENST00000519587 ZNF608Q9ULD9 1512 aaPredicted RBP23.63■■□□□ 1.37
SDC2-203ENST00000519587 PBRM1Q86U86 1689 aa23.6■■□□□ 1.37
SDC2-203ENST00000519587 TDRD9Q8NDG6 1382 aaKnown RBP23.59■■□□□ 1.37
SDC2-203ENST00000519587 GAPVD1Q14C86 1478 aa23.59■■□□□ 1.37
SDC2-203ENST00000519587 EEA1Q15075 1411 aa23.56■■□□□ 1.36
SDC2-203ENST00000519587 AQRO60306 1485 aaKnown RBP eCLIP23.55■■□□□ 1.366e-7■■■□□ 15.7
SDC2-203ENST00000519587 GRIN2BQ13224 1484 aa23.53■■□□□ 1.36
SDC2-203ENST00000519587 ERICH3Q5RHP9 1530 aa23.52■■□□□ 1.36
SDC2-203ENST00000519587 ARHGEF11O15085 1522 aa23.49■■□□□ 1.35
SDC2-203ENST00000519587 CUL7Q14999 1698 aa23.47■■□□□ 1.35
SDC2-203ENST00000519587 RUSC2Q8N2Y8 1516 aa23.44■■□□□ 1.34
SDC2-203ENST00000519587 MAGI1Q96QZ7 1491 aaPredicted RBP23.44■■□□□ 1.34
SDC2-203ENST00000519587 SNAPC4Q5SXM2 1469 aa23.42■■□□□ 1.34
SDC2-203ENST00000519587 ADAMTS12P58397 1594 aa23.41■■□□□ 1.34
SDC2-203ENST00000519587 IGF1RP08069 1367 aa23.37■■□□□ 1.33
SDC2-203ENST00000519587 FHAD1B1AJZ9 1412 aa23.34■■□□□ 1.33
SDC2-203ENST00000519587 FAM9AQ8IZU1 332 aaPredicted RBP23.33■■□□□ 1.33
SDC2-203ENST00000519587 SYNJ2O15056 1496 aa23.32■■□□□ 1.32
SDC2-203ENST00000519587 CSRNP3Q8WYN3 585 aa23.32■■□□□ 1.32
SDC2-203ENST00000519587 CYB5RLQ6IPT4 315 aa23.3■■□□□ 1.32
SDC2-203ENST00000519587 CARMIL1Q5VZK9 1371 aa23.29■■□□□ 1.32
SDC2-203ENST00000519587 CHD1O14646 1710 aa23.29■■□□□ 1.32
SDC2-203ENST00000519587 TRHP20396 242 aaPredicted RBP23.29■■□□□ 1.32
SDC2-203ENST00000519587 KIF21BO75037 1637 aa23.29■■□□□ 1.32
SDC2-203ENST00000519587 PRXQ9BXM0 1461 aa23.26■■□□□ 1.31
SDC2-203ENST00000519587 RAPGEF2Q9Y4G8 1499 aa23.25■■□□□ 1.31
SDC2-203ENST00000519587 GRIN2AQ12879 1464 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms